BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	57551 =	118 (1.200)	12 (0.140)	10/144	NT	11.0%	coding (618/621 nt)	USA300HOU_RS00240	hypothetical protein
*	?	USA300TCH1516_ALE	57600 =	87 (0.980)	12 (0.140)	10/144	NT	11.0%	intergenic (+46/+871)	USA300HOU_RS00240/USA300TCH1516_00049	hypothetical protein/hypothetical protein

Only 100 of 150 total aligned reads displayed.

ACAAGCGGTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTT  >  USA300TCH1516_ALE/57462‑57641

gagtacataagagatcgaacagaagctagagaaaaaggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaAt                                                                                           >  1:3378612‑M1/90‑91 (MQ=255)

gagtacataagagatcgaacagaagctagagaaaaaggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaAt                                                                                           <  1:2834990‑M1/2‑1 (MQ=255)

gagtacataagagatcgaacagaagctagagaaaaaggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaAt                                                                                           <  1:1474123‑M1/2‑1 (MQ=255)

   aGCGGTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaa                                                                                        <  1:695267/91‑1 (MQ=255)

    gCGGTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaa                                                                                       >  1:3360576/1‑91 (MQ=255)

    gCGGTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaa                                                                                       >  1:3359919/1‑91 (MQ=255)

    gCGGTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaa                                                                                       >  1:2854113/1‑91 (MQ=255)

     cataagagatcgaacagaagctagagaaaaaggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaATaaaaa                                                                                      <  1:2438359‑M1/7‑1 (MQ=255)

     cataagagatcgaacagaagctagagaaaaaggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaATaaaaa                                                                                      <  1:2438330‑M1/7‑1 (MQ=255)

      ggTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaaaa                                                                                     >  1:3835937/1‑91 (MQ=255)

      ataagagatcgaacagaagctagagaaaaaggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaATaaaaaa                                                                                     >  1:2125626‑M1/84‑91 (MQ=255)

       gTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaaaaa                                                                                    <  1:1016848/91‑1 (MQ=255)

       gTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaaaaa                                                                                    >  1:2818917/1‑91 (MQ=255)

       gTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaaaaa                                                                                    <  1:1720547/91‑1 (MQ=255)

       gTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaaaaa                                                                                    >  1:1575189/1‑91 (MQ=255)

       gTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATaaaaaaa                                                                                    >  1:1638417/1‑91 (MQ=255)

        tCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAAt                                                                                   >  1:45365/1‑91 (MQ=255)

        tCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAAt                                                                                   >  1:614533/1‑91 (MQ=255)

        tCAACACCCTAATTTAGTAAATGATAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAAt                                                                                   >  1:3430247/1‑91 (MQ=255)

          aaCACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAGTag                                                                                 <  1:2799197/91‑1 (MQ=255)

          aaCACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATag                                                                                 <  1:745784/91‑1 (MQ=255)

           acacCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATaga                                                                                <  1:2416915/91‑1 (MQ=255)

            cacCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATagag                                                                               <  1:3708927/91‑1 (MQ=255)

             acCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGc                                                                              >  1:2210408/1‑91 (MQ=255)

               ccTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCAt                                                                            >  1:1505490/1‑91 (MQ=255)

                 tAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCAtcc                                                                          >  1:2688359/1‑91 (MQ=255)

                   aTTGAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAATTAGAGCAtcctc                                                                        <  1:3206849/91‑1 (MQ=255)

                     ttAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAACAAAATAGAGCATCCTCCa                                                                      >  1:1200878/1‑91 (MQ=255)

                     ttAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCa                                                                      >  1:1200284/1‑91 (MQ=255)

                      tAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCAc                                                                     <  1:2938401/91‑1 (MQ=255)

                        gTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGt                                                                   >  1:1974050/1‑91 (MQ=255)

                        gTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGt                                                                   >  1:2746736/1‑91 (MQ=255)

                         tAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAAGGCGTTATAAAAAAATAGAGCATCCTCCACGtt                                                                  <  1:3606564/91‑1 (MQ=255)

                          aaaTGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTa                                                                 >  1:531930/1‑91 (MQ=255)

                           aaTGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTAt                                                                <  1:1809979/91‑1 (MQ=255)

                            aTGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATg                                                               >  1:706701/1‑91 (MQ=255)

                              gTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGa                                                             >  1:80689/1‑91 (MQ=255)

                               ttAATCTTGAAGGTATTAATATTAATAAAGATGCATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAg                                                            <  1:3396496/91‑1 (MQ=255)

                                 aaTCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGt                                                          >  1:3222051/1‑91 (MQ=255)

                                  aTCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTg                                                         <  1:2427683/91‑1 (MQ=255)

                                    ggtcaaggtagaacttattaagcatattaaattaattaacttgatacttttcaATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGct                                                       >  1:806170‑M1/54‑91 (MQ=255)

                                    cTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGct                                                       <  1:420068/91‑1 (MQ=255)

                                     ttGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGctc                                                      <  1:3743198/91‑1 (MQ=255)

                                     ttGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGctc                                                      <  1:236208/91‑1 (MQ=255)

                                     ttGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGctc                                                      <  1:236193/91‑1 (MQ=255)

                                     ttGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGctc                                                      <  1:3132948/91‑1 (MQ=255)

                                      tGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGctct                                                     >  1:3095901/1‑91 (MQ=255)

                                      tGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGctct                                                     <  1:1683403/91‑1 (MQ=255)

                                       gAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTg                                                    <  1:1796203/91‑1 (MQ=255)

                                       gAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTg                                                    <  1:2105887/91‑1 (MQ=255)

                                       caaggtagaacttattaagcatattaaattaattaacttgatacttttcaATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTg                                                    >  1:2936872‑M1/51‑91 (MQ=255)

                                        aaGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGt                                                   >  1:3321792/1‑91 (MQ=255)

                                         aggtagaacttattaagcatattaaattaattaacttgatacttttcaATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGtt                                                  >  1:3430802‑M1/49‑91 (MQ=255)

                                          ggtagaacttattaagcatattaaattaattaacttgatacttttcaATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGttt                                                 >  1:1756347‑M1/48‑91 (MQ=255)

                                          ggTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGttt                                                 <  1:2659058/91‑1 (MQ=255)

                                          ggTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGttt                                                 <  1:2655468/91‑1 (MQ=255)

                                           gtagaacttattaagcatattaaattaattaacttgatacttttcaATAAAAAAC‑AGAGCATCCTCCACGTTATGGAGGTGCTCTGttttt                                               >  1:4115808‑M1/47‑91 (MQ=255)

                                             attaatattaatAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGtttttt                                              >  1:1968797/1‑91 (MQ=255)

                                              gaacttattaagcatattaaattaattaacttgatacttttcaATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTa                                             >  1:714780‑M1/44‑91 (MQ=255)

                                                aatattaataAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTAtt                                           <  1:2656128/91‑1 (MQ=255)

                                                 cttattaagcatattaaattaattaacttgatacttttcaATAAAAAA‑TAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGa                                         >  1:253064‑M1/41‑91 (MQ=255)

                                                 cttattaagcatattaaattaattaacttgatacttttcaATAAAAAA‑TAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGa                                         >  1:1574494‑M1/41‑91 (MQ=255)

                                                 atattaataAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTg                                          >  1:3303170/1‑91 (MQ=255)

                                                 atattaataAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTg                                          <  1:1242464/91‑1 (MQ=255)

                                                 atattaataAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTg                                          <  1:1242636/91‑1 (MQ=255)

                                                     taataaAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGaaaa                                      <  1:2723003/91‑1 (MQ=255)

                                                      aataaAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAg                                     >  1:2454774/1‑91 (MQ=255)

                                                         aaaGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTAt                                  <  1:2336011/91‑1 (MQ=255)

                                                         aaaGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTAt                                  <  1:2336585/91‑1 (MQ=255)

                                                          aaGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATc                                 >  1:2103404/1‑91 (MQ=255)

                                                          aaGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATc                                 >  1:3736524/1‑91 (MQ=255)

                                                           aGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCa                                <  1:4093219/91‑1 (MQ=255)

                                                            gATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCaa                               >  1:3752598/1‑91 (MQ=255)

                                                            gATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCaa                               >  1:76239/1‑91 (MQ=255)

                                                              tGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGt                             >  1:2153391/1‑91 (MQ=255)

                                                               gAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGtt                            <  1:1148053/91‑1 (MQ=255)

                                                               gAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGtt                            <  1:3650536/91‑1 (MQ=255)

                                                               gAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGtt                            <  1:1678934/91‑1 (MQ=255)

                                                               gAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGtt                            >  1:1682793/1‑91 (MQ=255)

                                                                aaTTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGtta                           >  1:865462/1‑91 (MQ=255)

                                                                aaTTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGtta                           <  1:615800/91‑1 (MQ=255)

                                                                 aTTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGttaa                          >  1:3418125/1‑91 (MQ=255)

                                                                 aTTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGttaa                          <  1:2870736/91‑1 (MQ=255)

                                                                  tttGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGttaat                         >  1:2062191/1‑91 (MQ=255)

                                                                  tttGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGttaat                         <  1:361255/91‑1 (MQ=255)

                                                                   ttGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGttaatt                        >  1:662297/1‑91 (MQ=255)

                                                                     gAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGttaattaa                      >  1:2439436/1‑91 (MQ=255)

                                                                       aaTATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTaattaatt                    <  1:2900759/91‑1 (MQ=255)

                                                                        atatTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAAttaattt                   <  1:3698595/91‑1 (MQ=255)

                                                                        atatTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAAttaattt                   >  1:3878289/1‑91 (MQ=255)

                                                                        atatTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAAttaattt                   <  1:935483/91‑1 (MQ=255)

                                                                          atTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAAttaatttaa                 <  1:1358335/91‑1 (MQ=255)

                                                                           ttAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAAttaatttaat                >  1:2548941/1‑91 (MQ=255)

                                                                             aGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAatat              >  1:3487723/1‑91 (MQ=255)

                                                                                 aaTGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCtt          <  1:2045456/91‑1 (MQ=255)

                                                                                 aaTGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCtt          <  1:1934121/91‑1 (MQ=255)

                                                                                 aaTGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCtt          <  1:187035/91‑1 (MQ=255)

                                                                                    gCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTtaat       <  1:140259/91‑1 (MQ=255)

                                                                                       ttATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAg    <  1:359777/91‑1 (MQ=255)

                                                                                         ATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGtt  >  1:2214075‑M1/1‑91 (MQ=255)

ACAAGCGGTCAACACCCTAATTTAGTAAATGTTAATCTTGAAGGTATTAATATTAATAAAGATGAATTTGAAATATTAGTAAATGCGTTATAAAAAAATAGAGCATCCTCCACGTTATGGAGGTGCTCTGTTTTTTATTGAAAAGTATCAAGTTAATTAATTTAATATGCTTAATAAGTT  >  USA300TCH1516_ALE/57462‑57641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.