BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 349728	122 (1.240)	9 (0.100)	5/142	NT	7.7%	intergenic (+280/‑306)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG
*	?	USA300TCH1516_ALE	= 349744	107 (1.230)	9 (0.100)	5/142	NT	7.7%	intergenic (+296/‑290)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG

Only 100 of 193 total aligned reads displayed.

GTTATTTATTCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAT  >  USA300TCH1516_ALE/349638‑349818

 ttatttatTCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGt                                                                                           >  1:2217720/1‑91 (MQ=255)

 ttatttatTCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGt                                                                                           >  1:1180565/1‑91 (MQ=255)

  tatttattCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGta                                                                                          <  1:1045764/91‑1 (MQ=255)

   atttattCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGtat                                                                                         <  1:3062447/91‑1 (MQ=255)

   atttattCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGtat                                                                                         <  1:4006773/91‑1 (MQ=255)

     ttactCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGtatat                                                                                       <  1:3217202/91‑1 (MQ=255)

      tattCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGtatata                                                                                      >  1:2314980/1‑91 (MQ=255)

       attCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATAc                                                                                     <  1:1951835/91‑1 (MQ=255)

        ttCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACt                                                                                    <  1:2202178/91‑1 (MQ=255)

         tCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTa                                                                                   >  1:2176502/1‑91 (MQ=255)

         tCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTa                                                                                   <  1:1784896/91‑1 (MQ=255)

          cTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTAt                                                                                  <  1:145355/91‑1 (MQ=255)

          cTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTAt                                                                                  <  1:1529670/91‑1 (MQ=255)

             aaTATAATTTTATCAAGCTTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTaa                                                                               <  1:3557057/91‑1 (MQ=255)

             aaTATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTaa                                                                               <  1:3102115/91‑1 (MQ=255)

             aaTATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTaa                                                                               <  1:1400877/91‑1 (MQ=255)

              atatAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAat                                                                              >  1:1627798/1‑91 (MQ=255)

               tataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAata                                                                             <  1:3379440/91‑1 (MQ=255)

                ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGatattaatagtatata                                                                            <  1:54014‑M1/91‑17 (MQ=255)

                ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGatattaatagtatata                                                                            <  1:54059‑M1/91‑17 (MQ=255)

                ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGatattaatagtatata                                                                            <  1:3692961‑M1/91‑17 (MQ=255)

                ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGatattaatagtatata                                                                            <  1:3692783‑M1/91‑17 (MQ=255)

                ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAatat                                                                            >  1:1740597/1‑91 (MQ=255)

                ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAatat                                                                            >  1:1342081/1‑91 (MQ=255)

                  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                          <  1:1607286‑M2/91‑3 (MQ=255)

                  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                          <  1:1607292‑M2/91‑3 (MQ=255)

                  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                          <  1:3831781‑M2/91‑3 (MQ=255)

                  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                          <  1:1607259‑M2/91‑3 (MQ=255)

                  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                          >  1:21592‑M2/1‑89 (MQ=255)

                   aatttatCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATctt                                                                         <  1:145428‑M2/89‑4 (MQ=255)

                    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGatattaatagtatatacttt                                                                        <  1:798047‑M1/91‑21 (MQ=255)

                    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                        <  1:3262533‑M2/91‑5 (MQ=255)

                    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                        <  1:1554998‑M2/91‑5 (MQ=255)

                    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                        <  1:3262660‑M2/91‑5 (MQ=255)

                    gattatCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                        <  1:3244912‑M2/89‑5 (MQ=255)

                        aTCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttttg                                                                    <  1:3546320‑M2/91‑9 (MQ=255)

                         tCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttttgc                                                                   <  1:3386648‑M2/91‑10 (MQ=255)

                         tCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttttgc                                                                   <  1:2338235‑M2/91‑10 (MQ=255)

                           aaGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCta                                                                 <  1:1276085/91‑1 (MQ=255)

                           aaGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCta                                                                 <  1:499673/91‑1 (MQ=255)

                            aGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCtat                                                                <  1:818106/91‑1 (MQ=255)

                             gATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCtata                                                               <  1:411011/91‑1 (MQ=255)

                                     taATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                       <  1:2367119/91‑1 (MQ=255)

                                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                   <  1:2455581/91‑1 (MQ=255)

                                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                   <  1:1939064/91‑1 (MQ=255)

                                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                   <  1:3150209/91‑1 (MQ=255)

                                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                   <  1:769346/91‑1 (MQ=255)

                                          gTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGtt                                                  <  1:2822932/91‑1 (MQ=255)

                                            aTTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaa                                                >  1:917438/1‑91 (MQ=255)

                                             ttACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaa                                               <  1:3492030/91‑1 (MQ=255)

                                              tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                              <  1:537945/91‑1 (MQ=255)

                                              tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                              <  1:1004610/91‑1 (MQ=255)

                                                   ataGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAaataaata                                         <  1:72320/91‑1 (MQ=255)

                                                     aGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGa                                       <  1:1903935/91‑1 (MQ=255)

                                                      ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                      >  1:1641341/1‑91 (MQ=255)

                                                      ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                      >  1:1883203/1‑91 (MQ=255)

                                                        tGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAg                                    >  1:2646280/1‑91 (MQ=255)

                                                         gCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                   <  1:635410/91‑1 (MQ=255)

                                                         gCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                   <  1:869082/91‑1 (MQ=255)

                                                           tGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACa                                 >  1:2930068/1‑91 (MQ=255)

                                                            ggTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                <  1:1837183/91‑1 (MQ=255)

                                                            ggTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                >  1:2518404/1‑91 (MQ=255)

                                                              tAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaaaa                              <  1:3753050/91‑1 (MQ=255)

                                                               aaaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaat                             <  1:2783020/91‑1 (MQ=255)

                                                                aaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                            <  1:130716/91‑1 (MQ=255)

                                                                aaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                            >  1:1720205/1‑91 (MQ=255)

                                                                 aTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaataa                           <  1:981879/91‑1 (MQ=255)

                                                                  ttttATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaataat                          >  1:66766/1‑91 (MQ=255)

                                                                   tttatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATg                         <  1:3486595/91‑1 (MQ=255)

                                                                     tatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAg                       >  1:556623/1‑91 (MQ=255)

                                                                     aatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAg                       >  1:3949307/2‑91 (MQ=255)

                                                                      atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGt                      >  1:225297/1‑91 (MQ=255)

                                                                      atttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGt                      >  1:2989631/1‑91 (MQ=255)

                                                                         taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                   <  1:2881174/91‑1 (MQ=255)

                                                                         taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                   >  1:4143668/1‑91 (MQ=255)

                                                                         taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                   <  1:3158008/91‑1 (MQ=255)

                                                                           cGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                 >  1:3908883/1‑91 (MQ=255)

                                                                                tGGCAAAAAAGTATATACTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatctt            <  1:2466519‑M2/91‑65 (MQ=255)

                                                                                 ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg           >  1:925571/1‑91 (MQ=255)

                                                                                 ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg           >  1:1231011/1‑91 (MQ=255)

                                                                                 ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg           >  1:2988140/1‑91 (MQ=255)

                                                                                  gCAAAAAAGatattaatagtatatacttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttga          >  1:2508151‑M1/1‑9 (MQ=255)

                                                                                  gCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAgg          >  1:1113482/1‑91 (MQ=255)

                                                                                   cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg         <  1:1869801/91‑1 (MQ=255)

                                                                                   cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg         <  1:1869888/91‑1 (MQ=255)

                                                                                   cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg         >  1:2481882/1‑91 (MQ=255)

                                                                                    aaaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc        <  1:2813988/91‑1 (MQ=255)

                                                                                     aaaaaGatattaatagtatatacttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataa       <  1:1275118‑M1/91‑86 (MQ=255)

                                                                                     aaaaaGatattaatagtatatacttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataa       >  1:2624931‑M1/1‑6 (MQ=255)

                                                                                     aaaaaGTATATACTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataa       <  1:3619079‑M2/91‑70 (MQ=255)

                                                                                     aaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt       >  1:429328/1‑91 (MQ=255)

                                                                                     aaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt       >  1:2740557/1‑91 (MQ=255)

                                                                                      aaaaGTATATACTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataaa      <  1:3318271‑M2/91‑71 (MQ=255)

                                                                                       aaaGatattaatagtatatacttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataaaa     <  1:607700‑M1/91‑88 (MQ=255)

                                                                                       aaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat     <  1:4000178/91‑1 (MQ=255)

                                                                                        aaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt    <  1:3777152/91‑1 (MQ=255)

                                                                                        aaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt    <  1:2136470/91‑1 (MQ=255)

                                                                                         aGatattaatagtatatacttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataaaatt   <  1:1607259‑M1/91‑90 (MQ=255)

                                                                                         aGatattaatagtatatacttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataaaatt   >  1:21789‑M1/1‑2 (MQ=255)

                                                                                         aGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatta   <  1:657128/91‑1 (MQ=255)

GTTATTTATTCTGAATATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAT  >  USA300TCH1516_ALE/349638‑349818

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.