BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 349728	122 (1.240)	9 (0.100)	5/142	NT	7.7%	intergenic (+280/‑306)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG
*	?	USA300TCH1516_ALE	= 349744	107 (1.230)	9 (0.100)	5/142	NT	7.7%	intergenic (+296/‑290)	USA300HOU_RS01580/yezG_6	hypothetical protein/putative antitoxin YezG

Only 100 of 157 total aligned reads displayed.

ATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAA  >  USA300TCH1516_ALE/349654‑349833

ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAatat                                                                                           >  1:1740597/1‑91 (MQ=255)

ataATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAatat                                                                                           >  1:1342081/1‑91 (MQ=255)

  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                                         >  1:21789‑M2/1‑89 (MQ=255)

  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                                         <  1:1607292‑M2/91‑3 (MQ=255)

  aaTTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATct                                                                                         <  1:1607259‑M2/91‑3 (MQ=255)

   aatttatCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATctt                                                                                        <  1:145428‑M2/89‑4 (MQ=255)

    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                                       <  1:3262660‑M2/91‑5 (MQ=255)

    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                                       <  1:3262533‑M2/91‑5 (MQ=255)

    ttttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttt                                                                                       <  1:607700‑M2/91‑5 (MQ=255)

      ttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttt                                                                                     <  1:1275118‑M2/91‑7 (MQ=255)

      ttATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttt                                                                                     >  1:2624931‑M2/1‑85 (MQ=255)

         tCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttttgc                                                                                  >  1:2508151‑M2/1‑82 (MQ=255)

         tCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATcttttttgc                                                                                  <  1:2338235‑M2/91‑10 (MQ=255)

          cAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCt                                                                                 <  1:3472131/91‑1 (MQ=255)

           aaGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCta                                                                                <  1:1276085/91‑1 (MQ=255)

           aaGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCta                                                                                <  1:499673/91‑1 (MQ=255)

            aGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCtat                                                                               <  1:818106/91‑1 (MQ=255)

             gATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCtata                                                                              <  1:411533/91‑1 (MQ=255)

             gATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCtata                                                                              <  1:411011/91‑1 (MQ=255)

              attattATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATaa                                                                             <  1:1674522/91‑1 (MQ=255)

                 attatAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATta                                                                          <  1:259123/91‑1 (MQ=255)

                     taATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATaaa                                                                      <  1:2367119/91‑1 (MQ=255)

                      aaTTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAAt                                                                     >  1:1587667/1‑91 (MQ=255)

                        ttGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAg                                                                   <  1:3373417/91‑1 (MQ=255)

                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                                  <  1:1270423/91‑1 (MQ=255)

                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                                  <  1:1939064/91‑1 (MQ=255)

                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                                  <  1:769574/91‑1 (MQ=255)

                         tGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGt                                                                  <  1:2455581/91‑1 (MQ=255)

                          gTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGtt                                                                 <  1:2286242/91‑1 (MQ=255)

                          gTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGtt                                                                 <  1:2822932/91‑1 (MQ=255)

                           tATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTta                                                                >  1:3091349/1‑91 (MQ=255)

                           tATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTta                                                                <  1:3989605/91‑1 (MQ=255)

                            aTTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaa                                                               <  1:2238942/91‑1 (MQ=255)

                            aTTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaa                                                               >  1:917438/1‑91 (MQ=255)

                             ttACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaa                                                              <  1:3491840/91‑1 (MQ=255)

                             ttACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaa                                                              <  1:3492030/91‑1 (MQ=255)

                              tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                                             <  1:537974/91‑1 (MQ=255)

                              tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                                             <  1:537945/91‑1 (MQ=255)

                              tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                                             <  1:1004610/91‑1 (MQ=255)

                              tACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTtaaat                                                             >  1:670751/1‑91 (MQ=255)

                                   ataGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAaataaata                                                        >  1:648894/1‑91 (MQ=255)

                                     aGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGa                                                      <  1:1871268/91‑1 (MQ=255)

                                     aGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGa                                                      <  1:1903935/91‑1 (MQ=255)

                                     aGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGa                                                      <  1:2835341/91‑1 (MQ=255)

                                      ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                                     >  1:3700287/1‑91 (MQ=255)

                                      ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                                     >  1:1883203/1‑91 (MQ=255)

                                      ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                                     >  1:737917/1‑91 (MQ=255)

                                      ggTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGaa                                                     >  1:1641341/1‑91 (MQ=255)

                                        tGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAg                                                   <  1:1836147/91‑1 (MQ=255)

                                        tGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAg                                                   <  1:551043/91‑1 (MQ=255)

                                        tGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAg                                                   >  1:2646280/1‑91 (MQ=255)

                                         gCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                                  <  1:2159524/91‑1 (MQ=255)

                                         gCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGa                                                  <  1:869082/91‑1 (MQ=255)

                                           tGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACa                                                >  1:2930068/1‑91 (MQ=255)

                                            ggTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                               <  1:3112387/91‑1 (MQ=255)

                                            ggTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaa                                               <  1:1837183/91‑1 (MQ=255)

                                              tAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaaaa                                             <  1:3753050/91‑1 (MQ=255)

                                              tAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACaaaa                                             >  1:665342/1‑91 (MQ=255)

                                               aaaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaat                                            <  1:2783020/91‑1 (MQ=255)

                                                aaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                                           <  1:130716/91‑1 (MQ=255)

                                                aaTTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaata                                           >  1:1720205/1‑91 (MQ=255)

                                                  ttttATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAaataat                                         >  1:66766/1‑91 (MQ=255)

                                                   tttatttaCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATg                                        >  1:4014704/1‑91 (MQ=255)

                                                         taCGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAgg                                  <  1:3158008/91‑1 (MQ=255)

                                                           cGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAg                                >  1:3908883/1‑91 (MQ=255)

                                                                tGGCAAAAAAGTATATACTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatctt                           <  1:2466519‑M2/91‑65 (MQ=255)

                                                                 ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg                          >  1:925571/1‑91 (MQ=255)

                                                                 ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg                          >  1:2988140/1‑91 (MQ=255)

                                                                 ggCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAg                          >  1:1231011/1‑91 (MQ=255)

                                                                  gCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAgg                         >  1:1113482/1‑91 (MQ=255)

                                                                   cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                        <  1:1869801/91‑1 (MQ=255)

                                                                   cAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAggg                        <  1:1869815/91‑1 (MQ=255)

                                                                    aaaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGc                       <  1:2813988/91‑1 (MQ=255)

                                                                     aaaaaGTATATACTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataa                      <  1:3619079‑M2/91‑70 (MQ=255)

                                                                     aaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                      <  1:2989193/91‑1 (MQ=255)

                                                                     aaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                      >  1:2740557/1‑91 (MQ=255)

                                                                     aaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                      >  1:429328/1‑91 (MQ=255)

                                                                     aaaaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCt                      >  1:429299/1‑91 (MQ=255)

                                                                       aaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                    <  1:979048/91‑1 (MQ=255)

                                                                       aaaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                    <  1:4000213/91‑1 (MQ=255)

                                                                       aaaGTATATACTATTAATATCTTTTATGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtat                    <  1:3872259/91‑1 (MQ=255)

                                                                        aaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt                   <  1:3777152/91‑1 (MQ=255)

                                                                        aaGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtatt                   <  1:2136470/91‑1 (MQ=255)

                                                                          gTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCtattat                 <  1:319174/91‑1 (MQ=255)

                                                                           tatataCTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataaaattat                <  1:54059‑M2/91‑76 (MQ=255)

                                                                           tatataCTATTAATATcttttttgccatttcgtaaataaaatttaccagcacctatatgtaatacaattataataatcttgataaaattat                <  1:3692783‑M2/91‑76 (MQ=255)

                                                                           tatataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTattatt                >  1:2920533/1‑91 (MQ=255)

                                                                           tatataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTattatt                >  1:2297722/1‑91 (MQ=255)

                                                                             tataCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTa              >  1:3465757/1‑91 (MQ=255)

                                                                               taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAtttgta            <  1:810322/91‑4 (MQ=255)

                                                                               taCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACa            <  1:381843/91‑1 (MQ=255)

                                                                                aCTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTAtttgtaa           <  1:1950527/91‑5 (MQ=255)

                                                                                 cTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACaaa          <  1:983298/91‑1 (MQ=255)

                                                                                     tAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAaataat      <  1:3021295/91‑1 (MQ=255)

                                                                                      aaTATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataata     <  1:764622/91‑1 (MQ=255)

                                                                                      aaTATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataata     >  1:669534/1‑91 (MQ=255)

                                                                                      aaTATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataata     >  1:26346/1‑91 (MQ=255)

                                                                                       atatCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatat    <  1:2123637/91‑1 (MQ=255)

                                                                                         atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa  <  1:603970/91‑1 (MQ=255)

                                                                                         atCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAataatataa  >  1:3571130/1‑91 (MQ=255)

ATAATTTTATCAAGATTATTATAATTGTATTACATATAGGTGCTGGTAAATTTTATTTACGAAATGGCAAAAAAGTATATACTATTAATATCTTTTTTGCTATAATTATAAATAGTTAAATAAATAGAAAGACAAAATAATGAGTAGGAGTTTTAGGGCTATTATTTACAAATAATATAA  >  USA300TCH1516_ALE/349654‑349833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.