BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	669086 =	107 (1.090)	7 (0.080)	4/142	NT	7.8%	intergenic (+60/‑15)	adh/USA300TCH1516_00602	Alcohol dehydrogenase/hypothetical protein
*	?	USA300TCH1516_ALE	669128 =	71 (0.810)	7 (0.080)	4/142	NT	7.8%	coding (28/108 nt)	USA300TCH1516_00602	hypothetical protein

Only 100 of 134 total aligned reads displayed.

TATAACTGGTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATG  >  USA300TCH1516_ALE/668996‑669176

taggttcaattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaa                                                                                            <  1:3034630‑M1/1‑1 (MQ=255)

    ttcaattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAaca                                                                                        >  1:3649922‑M1/87‑91 (MQ=255)

    ttcaattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAaca                                                                                        >  1:2178073‑M1/87‑91 (MQ=255)

    ttcaattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAaca                                                                                        >  1:2447568‑M1/87‑91 (MQ=255)

     tcaattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAacac                                                                                       >  1:936316‑M1/86‑91 (MQ=255)

      tGGTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACg                                                                                      >  1:952532/1‑91 (MQ=255)

      tGGTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACg                                                                                      <  1:765477/91‑1 (MQ=255)

      caattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACg                                                                                      >  1:1032265‑M1/85‑91 (MQ=255)

      caattaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACg                                                                                      >  1:1690557‑M1/85‑91 (MQ=255)

        gTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAg                                                                                    <  1:3378025/91‑1 (MQ=255)

        attaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAg                                                                                    <  1:2829579‑M1/9‑1 (MQ=255)

        attaattaacaattccatacttaatcaacgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAg                                                                                    <  1:3148531‑M1/9‑1 (MQ=255)

         tAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAgg                                                                                   <  1:3090651/91‑1 (MQ=255)

         tAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAgg                                                                                   <  1:1999749/91‑1 (MQ=255)

         tAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAgg                                                                                   >  1:1343041/1‑91 (MQ=255)

          aGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGt                                                                                  <  1:3278493/91‑1 (MQ=255)

           gAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGtt                                                                                 >  1:1822108/1‑91 (MQ=255)

            aaTGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGttt                                                                                >  1:2350346/1‑91 (MQ=255)

            aaTGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGttt                                                                                >  1:1803204/1‑91 (MQ=255)

              tGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTc                                                                              <  1:3449898/91‑1 (MQ=255)

               ggTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCa                                                                             >  1:2267320/1‑91 (MQ=255)

               ggTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCa                                                                             >  1:2267276/1‑91 (MQ=255)

                      aaaTTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGa                                                                      >  1:1815310/1‑91 (MQ=255)

                      aaaTTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGa                                                                      <  1:3362921/91‑1 (MQ=255)

                       aaTTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGAt                                                                     >  1:512927/1‑91 (MQ=255)

                        aTTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATa                                                                    <  1:851221/91‑1 (MQ=255)

                         ttttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAg                                                                   <  1:1753618/91‑1 (MQ=255)

                         ttttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAg                                                                   >  1:1186709/1‑91 (MQ=255)

                         ttttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAg                                                                   >  1:2156347/1‑91 (MQ=255)

                          tttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGt                                                                  <  1:98061/91‑1 (MQ=255)

                          tttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGt                                                                  <  1:2101272/91‑1 (MQ=255)

                          tttAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGt                                                                  >  1:3699502/1‑91 (MQ=255)

                           ttAAAAATATCAACTGACTATATAGATAAAGAAGGGAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTg                                                                 <  1:1550535/91‑1 (MQ=255)

                            tAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGa                                                                <  1:325188/91‑1 (MQ=255)

                             aaaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaa                                                               >  1:912122/1‑91 (MQ=255)

                             aaaaaTATCAACTGACTATATAGATAAAGAAGGGAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaa                                                               <  1:2460205/91‑1 (MQ=255)

                              aaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaaa                                                              >  1:2362910/1‑91 (MQ=255)

                              aaaaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGaaa                                                              >  1:3078230/1‑91 (MQ=255)

                                aaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAt                                                            >  1:2966989/1‑91 (MQ=255)

                                aaTATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAt                                                            >  1:2967113/1‑91 (MQ=255)

                                  tatCAACTGACTATATAGATATAGAATGTAGTGCGCTAAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAtct                                                          <  1:405155/91‑1 (MQ=255)

                                  tatCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAtct                                                          <  1:2469778/91‑1 (MQ=255)

                                   atCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAtctc                                                         >  1:42671/1‑91 (MQ=255)

                                   atCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAAtctc                                                         >  1:43384/1‑91 (MQ=255)

                                   acgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAGGTTTTCATGAAAGATAGTGAAAAtctc                                                         >  1:2431181‑M1/56‑91 (MQ=255)

                                   acgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAGGTTTTCATGAAAGATAGTGAAAAtctc                                                         >  1:2431938‑M1/56‑91 (MQ=255)

                                    tCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCg                                                        <  1:2536354/91‑1 (MQ=255)

                                    cgcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCg                                                        >  1:2293666‑M1/55‑91 (MQ=255)

                                     gcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCgt                                                       >  1:2358156‑M1/54‑91 (MQ=255)

                                     gcttcatatatgtaagccattttataaaatacaaacaacacctcaaaaccaaaAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCgt                                                       >  1:3955746‑M1/54‑91 (MQ=255)

                                     cAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCgt                                                       <  1:213724/91‑1 (MQ=255)

                                      aaCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCgtg                                                      >  1:2543481/1‑91 (MQ=255)

                                      aaCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCgtg                                                      <  1:2899845/91‑1 (MQ=255)

                                      aaCTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCgtg                                                      <  1:2902755/91‑1 (MQ=255)

                                         tGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGttt                                                   <  1:2882484/91‑1 (MQ=255)

                                          gACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttt                                                  <  1:546270/91‑1 (MQ=255)

                                            cTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttttt                                                <  1:103065/91‑1 (MQ=255)

                                            cTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttttt                                                <  1:102932/91‑1 (MQ=255)

                                              atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg                                              <  1:2500655/91‑1 (MQ=255)

                                              atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg                                              >  1:3710019/1‑91 (MQ=255)

                                              atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg                                              >  1:3835261/1‑91 (MQ=255)

                                               tataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGt                                             >  1:3525420/1‑91 (MQ=255)

                                                ataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGtt                                            >  1:437132/1‑91 (MQ=255)

                                                 taGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGttt                                           <  1:1624572/91‑1 (MQ=255)

                                                   gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTg                                         <  1:1789053/91‑1 (MQ=255)

                                                   gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTg                                         <  1:3891052/91‑1 (MQ=255)

                                                     tAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAg                                       <  1:1450924/91‑1 (MQ=255)

                                                     tAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAg                                       <  1:1543108/91‑1 (MQ=255)

                                                       aagaagGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGgt                                     >  1:686195/1‑91 (MQ=255)

                                                         gaagGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGgtgt                                   <  1:2603626/91‑1 (MQ=255)

                                                           agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                 >  1:894584/1‑91 (MQ=255)

                                                           agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                 <  1:1380132/91‑1 (MQ=255)

                                                           agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                 >  1:1457305/1‑91 (MQ=255)

                                                           agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                 >  1:1457370/1‑91 (MQ=255)

                                                            ggTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttgt                                <  1:1257314/91‑1 (MQ=255)

                                                             gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                               <  1:3978463/91‑1 (MQ=255)

                                                             gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                               >  1:19672/1‑91 (MQ=255)

                                                             gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                               >  1:19727/1‑91 (MQ=255)

                                                             gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                               >  1:1391143/1‑91 (MQ=255)

                                                               aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttg                             >  1:1639369/1‑91 (MQ=255)

                                                               aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttg                             >  1:1639564/1‑91 (MQ=255)

                                                                gTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttgt                            >  1:1251321/1‑91 (MQ=255)

                                                                  gCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAt                          <  1:350054/91‑1 (MQ=255)

                                                                   ctctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtt                         <  1:3476089/91‑1 (MQ=255)

                                                                     ctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtttt                       <  1:2775252/91‑1 (MQ=255)

                                                                      tGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTta                      <  1:386829/91‑1 (MQ=255)

                                                                       gAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTtat                     <  1:2454857/91‑1 (MQ=255)

                                                                       gAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTtat                     >  1:3223424/1‑91 (MQ=255)

                                                                       gAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCCCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTtat                     <  1:3512192/91‑1 (MQ=255)

                                                                         acacTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaa                   <  1:3267662/91‑1 (MQ=255)

                                                                            cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTAGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt                <  1:3602615/91‑1 (MQ=255)

                                                                              aTCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATgg              >  1:2462214/1‑91 (MQ=255)

                                                                               tCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGc             >  1:522097/1‑91 (MQ=255)

                                                                                   tataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTAc         <  1:1656413/91‑1 (MQ=255)

                                                                                    ataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACa        <  1:2784934/91‑1 (MQ=255)

                                                                                      aaTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGATTACata      >  1:2070274/1‑91 (MQ=255)

                                                                                      aaTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGATTACata      >  1:2070356/1‑91 (MQ=255)

                                                                                       aTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTGGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatat     <  1:3494892/91‑1 (MQ=255)

                                                                                          AAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAGAATGGCTTACATATATg  <  1:3718004‑M1/91‑1 (MQ=255)

                                                                                          AAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATg  >  1:3784336‑M1/1‑91 (MQ=255)

TATAACTGGTAGAATGGTTATTAAATTTTAAAAATATCAACTGACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATG  >  USA300TCH1516_ALE/668996‑669176

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.