BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	669086 =	107 (1.090)	7 (0.080)	4/142	NT	7.8%	intergenic (+60/‑15)	adh/USA300TCH1516_00602	Alcohol dehydrogenase/hypothetical protein
*	?	USA300TCH1516_ALE	669128 =	71 (0.810)	7 (0.080)	4/142	NT	7.8%	coding (28/108 nt)	USA300TCH1516_00602	hypothetical protein

Only 100 of 116 total aligned reads displayed.

GACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGAACCTAT  >  USA300TCH1516_ALE/669038‑669218

gACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttt                                                                                            <  1:546270/91‑1 (MQ=255)

 aCTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGttttt                                                                                           <  1:1658455/91‑1 (MQ=255)

  cTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttttt                                                                                          <  1:103065/91‑1 (MQ=255)

  cTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGtttttt                                                                                          <  1:102932/91‑1 (MQ=255)

    atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg                                                                                        <  1:2500655/91‑1 (MQ=255)

    atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg                                                                                        >  1:3710019/1‑91 (MQ=255)

    atataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTgg                                                                                        >  1:3835261/1‑91 (MQ=255)

     tataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGt                                                                                       >  1:3525420/1‑91 (MQ=255)

      ataGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGtt                                                                                      >  1:437132/1‑91 (MQ=255)

       taGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGttt                                                                                     <  1:1624572/91‑1 (MQ=255)

         gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTg                                                                                   <  1:1789053/91‑1 (MQ=255)

         gATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTg                                                                                   <  1:3891052/91‑1 (MQ=255)

          aTAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGa                                                                                  <  1:3952772/91‑1 (MQ=255)

           tAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAg                                                                                 <  1:894401/91‑1 (MQ=255)

           tAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAg                                                                                 <  1:1543108/91‑1 (MQ=255)

            aaaGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAgg                                                                                <  1:1933938/91‑1 (MQ=255)

              agaagGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGgtg                                                                              >  1:2102193/1‑91 (MQ=255)

               gaagGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGgtgt                                                                             <  1:2603626/91‑1 (MQ=255)

                 agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                                                           >  1:1458521/1‑91 (MQ=255)

                 agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                                                           >  1:1457370/1‑91 (MQ=255)

                 agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                                                           >  1:1457305/1‑91 (MQ=255)

                 agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                                                           <  1:1380132/91‑1 (MQ=255)

                 agGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttg                                                                           >  1:894584/1‑91 (MQ=255)

                  ggTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGtgttgt                                                                          <  1:1257314/91‑1 (MQ=255)

                   gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                                                                         >  1:19727/1‑91 (MQ=255)

                   gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                                                                         >  1:19672/1‑91 (MQ=255)

                   gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                                                                         <  1:3978463/91‑1 (MQ=255)

                   gTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTgttgtt                                                                         >  1:1391143/1‑91 (MQ=255)

                     aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttg                                                                       >  1:1639564/1‑91 (MQ=255)

                     aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttg                                                                       >  1:1639369/1‑91 (MQ=255)

                     aGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttg                                                                       <  1:359066/91‑1 (MQ=255)

                      gTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGttgtttgt                                                                      >  1:1251321/1‑91 (MQ=255)

                        gCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAt                                                                    <  1:350054/91‑1 (MQ=255)

                         ctctGAACACTATCATTATAATCAAACGCGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtt                                                                   <  1:3700011/91‑1 (MQ=255)

                         ctctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtt                                                                   <  1:3476089/91‑1 (MQ=255)

                          tctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAttt                                                                  <  1:2208455/91‑1 (MQ=255)

                          tctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAttt                                                                  <  1:1102418/91‑1 (MQ=255)

                           ctGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTAtttt                                                                 <  1:2775252/91‑1 (MQ=255)

                             gAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTtat                                                               <  1:2454857/91‑1 (MQ=255)

                             gAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTtat                                                               >  1:3223424/1‑91 (MQ=255)

                             gAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCCCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTtat                                                               <  1:3512192/91‑1 (MQ=255)

                               acacTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATaa                                                             <  1:3267662/91‑1 (MQ=255)

                                  cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt                                                          <  1:2948620/91‑1 (MQ=255)

                                  cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt                                                          >  1:2348247/1‑91 (MQ=255)

                                  cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt                                                          >  1:3272002/1‑91 (MQ=255)

                                  cTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTAGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAAt                                                          <  1:3602615/91‑1 (MQ=255)

                                    aTCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATgg                                                        >  1:2462214/1‑91 (MQ=255)

                                    aTCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATgg                                                        <  1:479310/91‑1 (MQ=255)

                                     tCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGc                                                       >  1:522097/1‑91 (MQ=255)

                                       aTTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCtt                                                     >  1:3048714/1‑91 (MQ=255)

                                        ttATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTa                                                    <  1:663603/91‑1 (MQ=255)

                                         tataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTAc                                                   <  1:1656413/91‑1 (MQ=255)

                                          ataATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACa                                                  <  1:2784934/91‑1 (MQ=255)

                                            aaTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACata                                                >  1:2409256/1‑91 (MQ=255)

                                            aaTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGATTACata                                                >  1:2070274/1‑91 (MQ=255)

                                            aaTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGATTACata                                                >  1:2070356/1‑91 (MQ=255)

                                             aTCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTGGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatat                                               <  1:3494892/91‑1 (MQ=255)

                                              tCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACatata                                              >  1:2710740/1‑91 (MQ=255)

                                                AAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAGAATGGCTTACATATATg                                            <  1:3718004‑M1/91‑1 (MQ=255)

                                                AAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATg                                            >  1:3784336‑M1/1‑91 (MQ=255)

                                                 AACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGa                                           >  1:953757‑M1/1‑91 (MQ=255)

                                                 AACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGa                                           >  1:4124188‑M1/1‑91 (MQ=255)

                                                  ACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa                                          >  1:1311181‑M1/1‑91 (MQ=255)

                                                  ACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa                                          >  1:2103650‑M1/1‑91 (MQ=255)

                                                  ACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGaa                                          <  1:2359863‑M1/91‑1 (MQ=255)

                                                    acgagattttcactatctttcatgaaaacctcgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc                                        >  1:2358156‑M2/39‑91 (MQ=255)

                                                    acgagattttcactatctttcatgaaaacctcgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc                                        >  1:3955746‑M2/39‑91 (MQ=255)

                                                    ACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc                                        >  1:957744‑M1/1‑91 (MQ=255)

                                                    ACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGc                                        >  1:1876807‑M1/1‑91 (MQ=255)

                                                     cgagattttcactatctttcatgaaaacctcgtgtttCTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCg                                       >  1:1396583‑M2/38‑91 (MQ=255)

                                                      gagattttcactatctttcatgaaaacctcgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGt                                      >  1:2431181‑M2/37‑91 (MQ=255)

                                                      gagattttcactatctttcatgaaaacctcgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGt                                      >  1:2431938‑M2/37‑91 (MQ=255)

                                                         gTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGa                                   <  1:2247445/91‑1 (MQ=255)

                                                         gTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGa                                   <  1:2723396/91‑1 (MQ=255)

                                                             tCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTaa                               >  1:1382460/1‑91 (MQ=255)

                                                              cATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAg                              <  1:858589/91‑1 (MQ=255)

                                                                tGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTa                            <  1:1374074/91‑1 (MQ=255)

                                                                 gAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTAt                           <  1:2661483/91‑1 (MQ=255)

                                                                   aaGATCGTGAAAATCTCGTGTTTTTAGGTTTTGAGGTGTGGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATgg                         <  1:3853401/91‑1 (MQ=255)

                                                                       tAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAAtt                     >  1:195822/1‑91 (MQ=255)

                                                                         gTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGt                   <  1:1100801/91‑1 (MQ=255)

                                                                            aaaaTCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaa                <  1:2282761/91‑1 (MQ=255)

                                                                            aaaaTCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaa                <  1:3958522/91‑1 (MQ=255)

                                                                              aaTCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaatt              <  1:15769/91‑1 (MQ=255)

                                                                              aaTCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaatt              <  1:2965714/91‑1 (MQ=255)

                                                                               aTCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaatta             <  1:2865642/91‑1 (MQ=255)

                                                                               aTCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGttaatta             >  1:4039349/1‑91 (MQ=255)

                                                                                 ctcgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTtaattaat           <  1:2829579‑M2/82‑1 (MQ=255)

                                                                                 ctcgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTtaattaat           <  1:3148531‑M2/82‑1 (MQ=255)

                                                                                   cgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTg         >  1:1032265‑M2/8‑91 (MQ=255)

                                                                                   cgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTg         >  1:1690557‑M2/8‑91 (MQ=255)

                                                                                   cgtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTg         >  1:3191152‑M2/8‑91 (MQ=255)

                                                                                    gtgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGa        >  1:936316‑M2/7‑91 (MQ=255)

                                                                                     tgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGaa       >  1:2178073‑M2/6‑91 (MQ=255)

                                                                                     tgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGaa       >  1:2447568‑M2/6‑91 (MQ=255)

                                                                                     tgtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGaa       >  1:3649922‑M2/6‑91 (MQ=255)

                                                                                      gtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGAAc      <  1:3800333‑M2/87‑1 (MQ=255)

                                                                                      gtttTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGAAc      <  1:2464867‑M2/87‑1 (MQ=255)

                                                                                         tTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGAACCTa   <  1:3034630‑M2/90‑1 (MQ=255)

                                                                                         tTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGAACCTa   <  1:3431354‑M2/90‑1 (MQ=255)

GACTATATAGATAAAGAAGGTAGTGCTCTGAACACTATCATTATAATCAAACACGAGGTTTTCATGAAAGATAGTGAAAATCTCGTGTTTTTTGGTTTTGAGGTGTTGTTTGTATTTTATAAAATGGCTTACATATATGAAGCGTTGATTAAGTATGGAATTGTTAATTAATTGAACCTAT  >  USA300TCH1516_ALE/669038‑669218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.