BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	880859 =	137 (1.390)	10 (0.110)	8/144	NT	8.1%	intergenic (+10/‑347)	nuc/cspA_1	Thermonuclease/Cold shock protein CspA
*	?	USA300TCH1516_ALE	880891 =	103 (1.160)	10 (0.110)	8/144	NT	8.1%	intergenic (+42/‑315)	nuc/cspA_1	Thermonuclease/Cold shock protein CspA

Only 100 of 168 total aligned reads displayed.

GAGAAATTAAATATTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGAAAATAA  >  USA300TCH1516_ALE/880802‑880981

tactatttacttttttaattctgaattgataataaatcatatcgtgatctaaaaattataaaagtgtcactgctgctagtggcacttttat                                                                                            <  1:258845‑M2/1‑1 (MQ=255)

 agaAATTAAATATTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATaa                                                                                          >  1:1349940/1‑91 (MQ=255)

 agaAATGAAAAATGTGGAGCGATTACAATACTGATTCATGTCAATAATGCTCATTGTAAAAGTATCACT‑GCTGCTAGTGGCACTTTTATaa                                                                                          <  1:475174/91‑1 (MQ=255)

 actatttacttttttaattctgaattgataataaatcatatcgtgatctaaaaattataaaagtgtcactgctgctagtggcacttttata                                                                                           <  1:1017738‑M2/2‑1 (MQ=255)

  gaAATTAAATATTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAAt                                                                                         >  1:734381/1‑91 (MQ=255)

  gaAATTAAATATTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAAt                                                                                         >  1:293914/1‑91 (MQ=255)

  ctatttacttttttaattctgaattgataataaatcatatcgtgatctaaaaattataaaagtgtcactgctgctagtggcacttttaTaa                                                                                          <  1:3410689‑M2/3‑1 (MQ=255)

    atttacttttttaattctgaattgataataaatcatatcgtgatgtaaaaattataaaagtgtcactgctgctagtggcacttttaTAAtt                                                                                        <  1:3313740‑M2/5‑1 (MQ=255)

        aaaTATTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAg                                                                                   >  1:3445430/1‑91 (MQ=255)

          atatTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGAt                                                                                 >  1:2757850/1‑91 (MQ=255)

           tatTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATc                                                                                >  1:2484839/1‑91 (MQ=255)

            atTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCa                                                                               <  1:4048050/91‑1 (MQ=255)

            atTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACC‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCa                                                                               >  1:3401699/1‑91 (MQ=255)

              ttGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACg                                                                             <  1:440892/91‑1 (MQ=255)

               tGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGa                                                                            >  1:2376233/1‑91 (MQ=255)

                       aGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGAttt                                                                    >  1:2991164/1‑91 (MQ=255)

                       aGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGAttt                                                                    <  1:2027169/91‑1 (MQ=255)

                        gACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATtta                                                                   >  1:4071955/1‑91 (MQ=255)

                        gACAACGCTGATCCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATtta                                                                   <  1:3678878/91‑1 (MQ=255)

                         aCAATGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATttat                                                                  <  1:2349115/91‑1 (MQ=255)

                         aCAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATttat                                                                  >  1:1126388/1‑91 (MQ=255)

                             cGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATc                                                              <  1:225573/91‑1 (MQ=255)

                              gCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCa                                                             >  1:4097555/1‑91 (MQ=255)

                               cTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCaa                                                            >  1:2440373/1‑91 (MQ=255)

                               cTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCaa                                                            >  1:3643426/1‑91 (MQ=255)

                                 gATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAAtt                                                          >  1:1403916/1‑91 (MQ=255)

                                 gATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAAtt                                                          <  1:1856879/91‑1 (MQ=255)

                                  aTTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTc                                                         >  1:1915151/1‑91 (MQ=255)

                                  aTTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTc                                                         <  1:2885333/91‑1 (MQ=255)

                                   ttCAGGTCAATAATGCTCATTGTAAAAGTGTCATT‑GCTGCTAGTGGCACTTTTATAATTGTTAGATCACGATATGATTTATTATCAATTCa                                                        <  1:3688730/91‑1 (MQ=255)

                                    tCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAg                                                       >  1:1812761/1‑91 (MQ=255)

                                     cAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGa                                                      <  1:3098698/91‑1 (MQ=255)

                                     cAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGa                                                      <  1:2851824/91‑1 (MQ=255)

                                     cAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGATAGTGGCACTTTTATAATTTTGAGATCACGATATGATTTATTATCAATTCAGa                                                      >  1:3314935/1‑91 (MQ=255)

                                      aGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGaa                                                     >  1:3219837/1‑91 (MQ=255)

                                      aGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGaa                                                     >  1:183032/1‑91 (MQ=255)

                                       ggTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAAt                                                    <  1:2835213/91‑1 (MQ=255)

                                       ggTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAAt                                                    <  1:3833878/91‑1 (MQ=255)

                                       ggTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAAt                                                    >  1:2931485/1‑91 (MQ=255)

                                       ggTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAAt                                                    >  1:1703456/1‑91 (MQ=255)

                                          cAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTaa                                                 <  1:2122839/91‑1 (MQ=255)

                                            ataatGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTaaaa                                               <  1:1669811/91‑1 (MQ=255)

                                             taatGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTaaaaa                                              <  1:1405358/91‑1 (MQ=255)

                                               atGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAg                                            <  1:973053/91‑1 (MQ=255)

                                                tGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGt                                           <  1:1180468/91‑1 (MQ=255)

                                                 gCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATGATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTa                                          >  1:3593088/1‑91 (MQ=255)

                                                 gCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTa                                          >  1:2388039/1‑91 (MQ=255)

                                                   aaattaTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTaaa                                        >  1:3754412‑M1/7‑91 (MQ=255)

                                                    cATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAAt                                       >  1:1266176/1‑91 (MQ=255)

                                                       taTAAAAGTGCCACTAGCAGC‑AGTGACACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGt                                    <  1:1017738‑M1/89‑1 (MQ=255)

                                                       taTAAAAGTGCCACTAGCAGC‑AGTGACACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGt                                    <  1:1852578‑M1/89‑1 (MQ=255)

                                                        gTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTa                                   >  1:87470/1‑91 (MQ=255)

                                                        aTAAAAGTGCCACTAGCAGC‑AGTGACACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTa                                   <  1:258845‑M1/90‑1 (MQ=255)

                                                          AAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATc                                 <  1:901331‑M1/91‑1 (MQ=255)

                                                           aaaagtgccactagcagcagtgacacttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATc                                 >  1:2370685‑M2/32‑91 (MQ=255)

                                                           AAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:861407‑M1/1‑91 (MQ=255)

                                                           AAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:1243137‑M1/1‑91 (MQ=255)

                                                           AAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                <  1:438148‑M1/91‑1 (MQ=255)

                                                           AAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:2237151‑M1/1‑91 (MQ=255)

                                                            aaagtgccactagcagcagtgacacttttaTAATTTTTAGATCACGATATGATTTATTATCGATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:3326042‑M2/31‑91 (MQ=255)

                                                            aaagtgccactagcagcagtgacacttttaTAATTTTTAGATCACGATATGATTTATTATCGATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:3327360‑M2/31‑91 (MQ=255)

                                                            aaagtgccactagcagcagtgacacttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:2041883‑M2/31‑91 (MQ=255)

                                                            aaagtgccactagcagcagtgacacttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:633702‑M2/31‑91 (MQ=255)

                                                            aaagtgccactagcagcagtgacacttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCa                                >  1:2665844‑M2/31‑91 (MQ=255)

                                                             AGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCaaa                              <  1:2502190‑M1/91‑1 (MQ=255)

                                                               TGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAg                            >  1:515823‑M1/1‑91 (MQ=255)

                                                               TGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAg                            >  1:515978‑M1/1‑91 (MQ=255)

                                                                GTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGt                           >  1:3407917‑M1/1‑91 (MQ=255)

                                                                GTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTGATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGt                           >  1:3593889‑M1/1‑91 (MQ=255)

                                                                 tCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagta                          <  1:2201500/91‑1 (MQ=255)

                                                                  cACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaa                         >  1:1591972/1‑91 (MQ=255)

                                                                  cACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaa                         >  1:1516977/1‑91 (MQ=255)

                                                                  cACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaa                         <  1:3716161/91‑1 (MQ=255)

                                                                  cACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaa                         >  1:2927927/1‑91 (MQ=255)

                                                                  cACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaa                         >  1:591015/1‑91 (MQ=255)

                                                                   aCT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaag                        >  1:2731343/1‑91 (MQ=255)

                                                                   aCT‑GCTGATAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaag                        <  1:2066428/91‑1 (MQ=255)

                                                                    ct‑gctgCTAGTGACACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaagt                       >  1:4019856/1‑91 (MQ=255)

                                                                    actagcagcagtgacacttttaCAATTTTTAGATCACAATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAaagtaag                        >  1:3511571‑M2/23‑91 (MQ=255)

                                                                       gctgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAgtgt                     <  1:488494/91‑1 (MQ=255)

                                                                       gctgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAgtgt                     <  1:1276346/91‑1 (MQ=255)

                                                                       gctgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAgtgt                     <  1:2912440/91‑1 (MQ=255)

                                                                       gctgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAgtgt                     <  1:1407286/91‑1 (MQ=255)

                                                                        ctgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTa                    <  1:3822959/91‑1 (MQ=255)

                                                                         tgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTAt                   <  1:158591/91‑1 (MQ=255)

                                                                         tgctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTAt                   <  1:1259033/91‑1 (MQ=255)

                                                                           ctAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTAttt                 <  1:597109/91‑1 (MQ=255)

                                                                             aGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTaa               >  1:452461/1‑91 (MQ=255)

                                                                             aGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTaa               >  1:144030/1‑91 (MQ=255)

                                                                               tGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAata             >  1:3110097/1‑91 (MQ=255)

                                                                                 gCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATAtt           >  1:2948365/1‑91 (MQ=255)

                                                                                   acttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAg         >  1:497247‑M2/8‑91 (MQ=255)

                                                                                   acttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAg         >  1:754155‑M2/8‑91 (MQ=255)

                                                                                    cttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGa        >  1:684049‑M2/7‑91 (MQ=255)

                                                                                     ttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGaa       <  1:597885‑M2/86‑1 (MQ=255)

                                                                                     ttttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGaa       <  1:2452823‑M2/86‑1 (MQ=255)

                                                                                       ttaTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGaaaa     <  1:1727683‑M2/88‑1 (MQ=255)

                                                                                        taTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGAAAAt    >  1:3054134‑M2/3‑91 (MQ=255)

                                                                                        taTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGAAAAt    >  1:3041148‑M2/3‑91 (MQ=255)

                                                                                         aTAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGAAAATa   >  1:1158360‑M2/2‑91 (MQ=255)

GAGAAATTAAATATTTGGAGCGAAGACAACGCTGATTCAGGTCAATAATGCTCATTGTAAAAGTGTCACT‑GCTGCTAGTGGCACTTTTATAATTTTTAGATCACGATATGATTTATTATCAATTCAGAATTAAAAAAGTAAATAGTATCAAAAGTAAGTGTATTTAATATTAGAAAATAA  >  USA300TCH1516_ALE/880802‑880981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.