BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 951516	84 (0.850)	5 (0.060)	4/144	NT	5.5%	intergenic (+21/‑287)	USA300HOU_RS04740/rocD2_2	putative oxidoreductase/Ornithine aminotransferase 2
*	?	USA300TCH1516_ALE	= 951537	96 (1.080)	5 (0.060)	4/144	NT	5.5%	intergenic (+42/‑266)	USA300HOU_RS04740/rocD2_2	putative oxidoreductase/Ornithine aminotransferase 2

Only 100 of 130 total aligned reads displayed.

GCATCAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGTAA  >  USA300TCH1516_ALE/951447‑951626

gCATCAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTg                                                                                           >  1:3162293/1‑91 (MQ=255)

  aTCAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATATGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGtt                                                                                         <  1:3287187‑M2/91‑3 (MQ=255)

  aTCAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGtt                                                                                         <  1:1182217‑M2/91‑3 (MQ=255)

    cAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGttag                                                                                       >  1:2131534‑M2/1‑87 (MQ=255)

    cAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGttag                                                                                       >  1:2131487‑M2/1‑87 (MQ=255)

     aaTTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGttagt                                                                                      >  1:3588113‑M2/1‑86 (MQ=255)

     aaTTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGttagt                                                                                      >  1:2153495‑M2/1‑86 (MQ=255)

       tttAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGttagtgg                                                                                    <  1:3342659‑M2/91‑8 (MQ=255)

          aaTGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGttt                                                                                 <  1:760141/91‑1 (MQ=255)

          aaTGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGttt                                                                                 >  1:384728/1‑91 (MQ=255)

          aaTGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGttt                                                                                 >  1:1170403/1‑91 (MQ=255)

           aTGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGtttt                                                                                >  1:1929994/1‑91 (MQ=255)

            tGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTc                                                                               <  1:1659840/91‑1 (MQ=255)

            tGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTCAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTc                                                                               <  1:1085820/91‑1 (MQ=255)

             gAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCa                                                                              <  1:1779510/91‑1 (MQ=255)

              aaGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCaa                                                                             >  1:2640838/1‑91 (MQ=255)

               aGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAat                                                                            >  1:2176347/1‑91 (MQ=255)

               aGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAat                                                                            >  1:3696251/1‑91 (MQ=255)

                gggTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAata                                                                           <  1:3899281/91‑1 (MQ=255)

                 ggTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAatat                                                                          <  1:1388378/91‑1 (MQ=255)

                   ttttATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATAttt                                                                        >  1:2227527/1‑91 (MQ=255)

                   ttttATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATAttt                                                                        >  1:2227195/1‑91 (MQ=255)

                   ttttATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATAttt                                                                        <  1:3802483/91‑1 (MQ=255)

                     ttATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTtat                                                                      >  1:3993623/1‑91 (MQ=255)

                     ttATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTtat                                                                      <  1:3735626/91‑1 (MQ=255)

                       aTCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTataa                                                                    >  1:3635576/1‑91 (MQ=255)

                        tCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTataaa                                                                   >  1:179694/1‑91 (MQ=255)

                          cATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTataaata                                                                 >  1:1176437/1‑91 (MQ=255)

                            ttACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTAtaaataaa                                                               <  1:3982383/91‑1 (MQ=255)

                            ttACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTAtaaataaa                                                               <  1:3981892/91‑1 (MQ=255)

                             tACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATaaaa                                                              <  1:1600288/91‑1 (MQ=255)

                             tACCACGGAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATaaaa                                                              <  1:1600222/91‑1 (MQ=255)

                               ccACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAat                                                            >  1:3101298/1‑91 (MQ=255)

                                cACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAtata                                                           >  1:3738565/1‑91 (MQ=255)

                                       aGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAg                                                    >  1:1792273/1‑91 (MQ=255)

                                        gATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGt                                                   >  1:2978825/1‑91 (MQ=255)

                                        gATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGt                                                   >  1:571932/1‑91 (MQ=255)

                                          taaataaGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTaa                                                 >  1:3433936/1‑91 (MQ=255)

                                          taaataaGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTaa                                                 >  1:1813258/1‑91 (MQ=255)

                                            aataaGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTaaaa                                               >  1:374012/1‑91 (MQ=255)

                                            aataaGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTaaaa                                               >  1:1468331/1‑91 (MQ=255)

                                              taaGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAata                                             <  1:316789/91‑1 (MQ=255)

                                              taaGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAata                                             <  1:2189660/91‑1 (MQ=255)

                                                  tgtTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGttagtggtaacagttaaacacttatttatctttacgtggtaatggataaa                                         <  1:3915956‑M2/91‑51 (MQ=255)

                                                  tgtTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACt                                         >  1:1120893/1‑91 (MQ=255)

                                                  tgtTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACt                                         >  1:4025438/1‑91 (MQ=255)

                                                   gtTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACtt                                        <  1:810381/91‑1 (MQ=255)

                                                     ttAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACtttt                                      >  1:3632222/1‑91 (MQ=255)

                                                     ttAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACtttt                                      >  1:3631973/1‑91 (MQ=255)

                                                     ttAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACtttt                                      <  1:1305340/91‑1 (MQ=255)

                                                       aaCTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGa                                    <  1:2643648/91‑1 (MQ=255)

                                                         cTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGAtt                                  <  1:1275472/91‑1 (MQ=255)

                                                         cTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGAtt                                  <  1:1275487/91‑1 (MQ=255)

                                                          tGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTa                                 >  1:2883827/1‑91 (MQ=255)

                                                            ttACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAg                               >  1:3062708/1‑91 (MQ=255)

                                                            ttACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAg                               >  1:3491941/1‑91 (MQ=255)

                                                            ttACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAg                               >  1:772580/1‑91 (MQ=255)

                                                            ttACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAg                               >  1:3966338/1‑91 (MQ=255)

                                                             tACCACTAATGATATTGTGTATGCAATTTGttagtggtaacagttaaacacttatttatctttacgtggtaatggataaaacccttcatta                              <  1:952859‑M2/91‑62 (MQ=255)

                                                              aCCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAgtg                             >  1:598220/1‑91 (MQ=255)

                                                              aCCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAgtg                             <  1:388264/91‑1 (MQ=255)

                                                              aCCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAgtg                             >  1:3408029/1‑91 (MQ=255)

                                                               ccACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAgtgt                            >  1:1594378/1‑91 (MQ=255)

                                                               ccACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAgtgt                            <  1:224549/91‑1 (MQ=255)

                                                                cccTAATGATATTGTGTATGCAATTTGTTAGTGGTCTTCAATATTTATAAATAAAAATATTCTTAGTAAAATACACTTTTGCTTAAGTGTa                           >  1:942691/3‑91 (MQ=255)

                                                                cACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTa                           >  1:4014033/1‑91 (MQ=255)

                                                                cACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTa                           >  1:1317807/1‑91 (MQ=255)

                                                                 aCTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTaa                          >  1:345946/1‑91 (MQ=255)

                                                                 aCTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTaa                          >  1:1977976/1‑91 (MQ=255)

                                                                  cTAATGATATTGTGTATGCAATTTGttagtggtaacagttaaacacttatttatctttacgtggtaatggataaaacccttcattaaattg                         <  1:908279‑M2/91‑67 (MQ=255)

                                                                   tAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTaaaa                        >  1:3369787/1‑91 (MQ=255)

                                                                      tGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTa                     <  1:2085088/91‑1 (MQ=255)

                                                                       gATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTAt                    >  1:667794/1‑91 (MQ=255)

                                                                        atatTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATc                   <  1:3179036/91‑1 (MQ=255)

                                                                        atatTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATc                   <  1:2039632/91‑1 (MQ=255)

                                                                        atatTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATc                   <  1:2039277/91‑1 (MQ=255)

                                                                        atatTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATc                   <  1:3443562/91‑1 (MQ=255)

                                                                          atTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCaa                 >  1:598797/1‑91 (MQ=255)

                                                                          atTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCaa                 >  1:2325184/1‑91 (MQ=255)

                                                                          atTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCaa                 >  1:529038/1‑91 (MQ=255)

                                                                          atTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCaa                 >  1:4111813/1‑91 (MQ=255)

                                                                          atTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCaa                 >  1:4063640/1‑91 (MQ=255)

                                                                           ttGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAAt                >  1:3001791/1‑91 (MQ=255)

                                                                            tgtgTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAAtt               <  1:3087587/91‑1 (MQ=255)

                                                                             gtgtATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTc              <  1:477740/91‑1 (MQ=255)

                                                                              tgtATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCt             >  1:1663523/1‑91 (MQ=255)

                                                                                tATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCttt           <  1:2606902/91‑1 (MQ=255)

                                                                                tATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCttt           >  1:1120608/1‑91 (MQ=255)

                                                                                tATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCttt           >  1:1121146/1‑91 (MQ=255)

                                                                                  tGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTg         <  1:2732547/91‑1 (MQ=255)

                                                                                  tGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTg         <  1:2732045/91‑1 (MQ=255)

                                                                                   gCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGc        <  1:2125232/91‑1 (MQ=255)

                                                                                      aTTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTg     >  1:1408414/1‑91 (MQ=255)

                                                                                       tttGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGt    <  1:3798940/91‑1 (MQ=255)

                                                                                       tttGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGt    <  1:2108428/91‑1 (MQ=255)

                                                                                       tttGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGt    <  1:2093605/91‑1 (MQ=255)

                                                                                       tttGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGt    <  1:2091885/91‑1 (MQ=255)

                                                                                        ttGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGTa   <  1:2952253/91‑1 (MQ=255)

                                                                                         tGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGTaa  >  1:2999923/1‑91 (MQ=255)

                                                                                         tGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCGTGGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGTaa  >  1:3486392/1‑91 (MQ=255)

GCATCAATTTAATGAAGGGTTTTATCCATTACCACGTAAAGATAAATAAGTGTTTAACTGTTACCACTAATGATATTGTGTATGCAATTTGTTAGTGGTTTTCAATATTTATAAATAAAAATATTCTTAGTAAAATATACTTTTGATTAAGTGTAAAATTATCAATTCTTTTGCTTGTAA  >  USA300TCH1516_ALE/951447‑951626

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.