BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1117293 =	90 (0.920)	9 (0.110)	6/130	NT	11.0%	intergenic (+6/+148)	suhB_1/USA300TCH1516_01040	Inositol‑1‑monophosphatase/hypothetical protein
*	?	USA300TCH1516_ALE	1117341 =	73 (0.910)	9 (0.110)	6/130	NT	11.0%	intergenic (+54/+100)	suhB_1/USA300TCH1516_01040	Inositol‑1‑monophosphatase/hypothetical protein

Only 100 of 141 total aligned reads displayed.

ATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTG  >  USA300TCH1516_ALE/1117251‑1117430

aTTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTta                                                                                           >  1:1901492/1‑91 (MQ=255)

aTTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTta                                                                                           >  1:4076556/1‑91 (MQ=255)

   aCATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATAc                                                                                        <  1:3481857/91‑1 (MQ=255)

    cATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATAcc                                                                                       >  1:3237464/1‑91 (MQ=255)

     aTGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCt                                                                                      <  1:1380886/91‑1 (MQ=255)

      tGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCtt                                                                                     >  1:3034295/1‑91 (MQ=255)

      tGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCtt                                                                                     >  1:696391/1‑91 (MQ=255)

      tGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCtt                                                                                     >  1:1375967/1‑91 (MQ=255)

        aacaacGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTaa                                                                                   >  1:2785347/1‑91 (MQ=255)

          caacGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAaat                                                                                 >  1:1226565/1‑91 (MQ=255)

          caacGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAaat                                                                                 >  1:1226176/1‑91 (MQ=255)

          caacGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAaat                                                                                 >  1:3979642/1‑91 (MQ=255)

              gATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAataata                                                                             <  1:2191475/91‑1 (MQ=255)

               aTTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAAtaataa                                                                            >  1:1780530/1‑91 (MQ=255)

               aTTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAAtaataa                                                                            >  1:1780549/1‑91 (MQ=255)

                tttAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATaaa                                                                           >  1:739429/1‑91 (MQ=255)

                  tAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATaaaaa                                                                         >  1:2180393/1‑91 (MQ=255)

                  tAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATaaaaa                                                                         <  1:1213959/91‑1 (MQ=255)

                   aaaaGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAac                                                                        <  1:4094500/91‑1 (MQ=255)

                    aaaGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAaca                                                                       >  1:2606842/1‑91 (MQ=255)

                     aaGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAacac                                                                      >  1:195786/1‑91 (MQ=255)

                     aaGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAacac                                                                      >  1:1389563/1‑91 (MQ=255)

                      aGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcg                                                                     <  1:899156/91‑1 (MQ=255)

                      aGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcg                                                                     <  1:2779100/91‑1 (MQ=255)

                       gAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACAcgc                                                                    >  1:3633211/1‑91 (MQ=255)

                           aTCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCa                                                                >  1:953495/1‑91 (MQ=255)

                             cAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAat                                                              <  1:1813411/91‑1 (MQ=255)

                             cAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAat                                                              >  1:3808581/1‑91 (MQ=255)

                             cAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAat                                                              <  1:1921352/91‑1 (MQ=255)

                               aaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAatat                                                            >  1:3135750/1‑91 (MQ=255)

                               aaaTAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAatat                                                            <  1:828373/91‑1 (MQ=255)

                                aataatTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAAtata                                                           >  1:880964/1‑91 (MQ=255)

                                     ttACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAAcc                                                      <  1:2621370/91‑1 (MQ=255)

                                      tACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCa                                                     <  1:3095926/91‑1 (MQ=255)

                                       aCCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAg                                                    <  1:2919597/91‑1 (MQ=255)

                                       aCCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAg                                                    <  1:2919598/91‑1 (MQ=255)

                                         cAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAACTAATAAAAACACGCGCCAATATAAAACCAGtt                                                  >  1:3546040/1‑91 (MQ=255)

                                         cAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGtt                                                  >  1:2799338/1‑91 (MQ=255)

                                               cgtaatatgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGt                                            >  1:2301719‑M2/44‑91 (MQ=255)

                                               CGTAATCTGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGt                                            <  1:3232343‑M1/91‑1 (MQ=255)

                                                gtaatatgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGtt                                           >  1:414194‑M2/43‑91 (MQ=255)

                                                GTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGtt                                           <  1:2365999‑M1/91‑1 (MQ=255)

                                                GTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGtt                                           <  1:2363105‑M1/91‑1 (MQ=255)

                                                 taatatgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtc                                          >  1:1677906‑M2/42‑91 (MQ=255)

                                                 TAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtc                                          >  1:1060896‑M1/1‑91 (MQ=255)

                                                    TATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcatc                                       <  1:3470220‑M1/91‑1 (MQ=255)

                                                    TATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcatc                                       <  1:3254376‑M1/91‑1 (MQ=255)

                                                    TATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAACGTtcatc                                       <  1:2070733‑M1/91‑1 (MQ=255)

                                                     atgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcatca                                      >  1:2896669‑M2/38‑91 (MQ=255)

                                                     ATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTtcatca                                      >  1:2815212‑M1/1‑91 (MQ=255)

                                                      tgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTcatcat                                     >  1:3558223‑M2/37‑91 (MQ=255)

                                                      tgttacctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTcatcat                                     >  1:3558119‑M2/37‑91 (MQ=255)

                                                      TGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTcatcat                                     >  1:3360392‑M1/1‑91 (MQ=255)

                                                       GTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATg                                    >  1:69175‑M1/1‑91 (MQ=255)

                                                        TAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCAtgatga                                   >  1:376707‑M1/1‑91 (MQ=255)

                                                         aGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATGATGaa                                  <  1:2791869/91‑1 (MQ=255)

                                                         aGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATGATGaa                                  <  1:2096266/91‑1 (MQ=255)

                                                         aGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATGATGaa                                  <  1:2019125/91‑1 (MQ=255)

                                                          gTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAAc                                 <  1:2576224/91‑1 (MQ=255)

                                                          gTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAAc                                 <  1:759560/91‑1 (MQ=255)

                                                          acctaattgttaggactacatattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAAc                                 >  1:3939427‑M2/33‑91 (MQ=255)

                                                            ccTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAt                               >  1:1243152/1‑91 (MQ=255)

                                                              tAACAGTTAGGTAACATATTACGCTTTTATACCTTAAATGATAAAAACACGCGGCAATATAAAACCAGTTAAATGTTCATCATGAACAtgt                             <  1:3856578/91‑1 (MQ=255)

                                                               aaCAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtg                            <  1:3231897/91‑1 (MQ=255)

                                                                aCAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATGATGAACAtttaa                           <  1:162538/91‑5 (MQ=255)

                                                                aCAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtgt                           <  1:259507/91‑1 (MQ=255)

                                                                 cAATTAGGTAACATATTACGCTTTTATACCTTGAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtgtg                          <  1:3537544/91‑1 (MQ=255)

                                                                 cAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtgtg                          <  1:1811795/91‑1 (MQ=255)

                                                                 cAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtgtg                          <  1:1210076/91‑1 (MQ=255)

                                                                 cAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACAtgtgtg                          >  1:3828732/1‑91 (MQ=255)

                                                                  aaTTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTgg                         >  1:943687/1‑91 (MQ=255)

                                                                     tAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCt                      <  1:394648/91‑1 (MQ=255)

                                                                      aGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCtt                     >  1:801643/1‑91 (MQ=255)

                                                                        gTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaa                   >  1:2447167/1‑91 (MQ=255)

                                                                         tAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaaa                  <  1:3201672/91‑1 (MQ=255)

                                                                         tAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaaa                  <  1:3564524/91‑1 (MQ=255)

                                                                         tAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTaaa                  <  1:914899/91‑1 (MQ=255)

                                                                            catattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCa               <  1:4136503‑M2/77‑1 (MQ=255)

                                                                              tattacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAc             <  1:1055597‑M2/79‑1 (MQ=255)

                                                                               attacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcg            <  1:3649285‑M2/80‑1 (MQ=255)

                                                                                ttacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgc           <  1:1710098‑M2/81‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg          <  1:3927940‑M2/82‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg          <  1:3927892‑M2/82‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg          <  1:2439682‑M2/82‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg          <  1:3606475‑M2/82‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg          <  1:3604296‑M2/82‑1 (MQ=255)

                                                                                 tacgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAAcgcg          <  1:2880712‑M2/82‑1 (MQ=255)

                                                                                  acgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgt         <  1:2362074‑M2/83‑1 (MQ=255)

                                                                                   cgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgtg        >  1:3643983‑M2/8‑91 (MQ=255)

                                                                                   cgcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgtg        >  1:3643939‑M2/8‑91 (MQ=255)

                                                                                    gcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCCGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGcgtgg       >  1:2314986‑M2/7‑90 (MQ=255)

                                                                                    gcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgtgt       <  1:346961‑M2/85‑1 (MQ=255)

                                                                                    gcttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCgtgt       >  1:1054742‑M2/7‑91 (MQ=255)

                                                                                     cttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGtt      >  1:3377872‑M2/6‑91 (MQ=255)

                                                                                      ttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTa     >  1:2524395‑M2/5‑91 (MQ=255)

                                                                                      ttttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTa     >  1:1649440‑M2/5‑91 (MQ=255)

                                                                                       tttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTAt    <  1:1629262‑M2/88‑1 (MQ=255)

                                                                                        ttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTAtt   <  1:1465658‑M2/89‑1 (MQ=255)

                                                                                        ttATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTAtt   <  1:1465716‑M2/89‑1 (MQ=255)

                                                                                         tATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTg  <  1:912192‑M2/90‑1 (MQ=255)

ATTACATGAACAACGATTTAAAAGAAAATCAAAATAATTACCAAAAGCGTAATATGTAGTCCTAACAATTAGGTAACATATTACGCTTTTATACCTTAAATAATAAAAACACGCGCCAATATAAAACCAGTTAAATGTTCATCATGAACATGTGTGGTCTTAAATCAACGCGTGTTATTG  >  USA300TCH1516_ALE/1117251‑1117430

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.