BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1135893 =	99 (1.010)	10 (0.120)	6/136	NT	10.0%	intergenic (+2/‑78)	USA300TCH1516_01057/rpmF	hypothetical protein/50S ribosomal protein L32
*	?	USA300TCH1516_ALE	1135930 =	96 (1.150)	10 (0.120)	6/136	NT	10.0%	intergenic (+39/‑41)	USA300TCH1516_01057/rpmF	hypothetical protein/50S ribosomal protein L32

Only 100 of 152 total aligned reads displayed.

AGTTGATCCAAGGCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACGTCG  >  USA300TCH1516_ALE/1135840‑1136020

tggtactgccatgatatatcctccttagattataaacgaaaaatactaaatgtTAGTTTAATTAATGATATAATGTTGTTAATTAAACTaa                                                                                            >  1:4026759‑M1/54‑91 (MQ=255)

       gccatgatatatcctccttagattataaacgaaaaatactaaatgtTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAg                                                                                     >  1:1488068‑M1/47‑91 (MQ=255)

       ccAAGGCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAAAGATATAATGTTGTTAATTAAACTAACATTTAg                                                                                     >  1:3546013/1‑91 (MQ=255)

        ccatgatatatcctccttagattataaacgaaaaatactaaatgtTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGt                                                                                    >  1:1855522‑M1/46‑91 (MQ=255)

        ccatgatatatcctccttagattataaacgaaaaatactaaatgtTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGt                                                                                    >  1:3607553‑M1/46‑91 (MQ=255)

          aGGCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAt                                                                                  <  1:1092415/91‑1 (MQ=255)

          aGGCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAt                                                                                  <  1:4065226/91‑1 (MQ=255)

          aGGCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAt                                                                                  <  1:4065082/91‑1 (MQ=255)

           ggCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAtt                                                                                 >  1:91051/1‑91 (MQ=255)

             cTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAtttt                                                                               <  1:3146843/91‑1 (MQ=255)

             cTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAtttt                                                                               >  1:479066/1‑91 (MQ=255)

             cTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAtttt                                                                               >  1:3600173/1‑91 (MQ=255)

              ttCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTAttttt                                                                              <  1:3767989/91‑1 (MQ=255)

                  aaaaTTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGtt                                                                          >  1:2820902/1‑91 (MQ=255)

                   aaaTTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGttt                                                                         <  1:1650218/91‑1 (MQ=255)

                   aaaTTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGttt                                                                         <  1:2909455/91‑1 (MQ=255)

                     aTTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTtat                                                                       <  1:1700603/91‑1 (MQ=255)

                     aTTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTtat                                                                       <  1:539444/91‑1 (MQ=255)

                      ttACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTtata                                                                      >  1:1606056/1‑91 (MQ=255)

                       tACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATaa                                                                     <  1:342745/91‑1 (MQ=255)

                       tACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATaa                                                                     >  1:3178390/1‑91 (MQ=255)

                        acaacaATTGTATGATAAAGAGCAATAAGTAGTCTAACTAATGATACAATGTTGTTAATCATACTAACATTTAGTATTTTTCGTTTATAAt                                                                    >  1:3316678/1‑91 (MQ=255)

                         caacaaTTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATc                                                                   <  1:2201839/91‑1 (MQ=255)

                          aacaaTTATATGATAAAGAGCAATATGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCt                                                                  <  1:3845358/91‑1 (MQ=255)

                          aacaaTTATATGATAAAGAGCAATATGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCt                                                                  <  1:3845841/91‑1 (MQ=255)

                           acaaTTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTa                                                                 >  1:1632293/1‑91 (MQ=255)

                            caaTTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTaa                                                                >  1:116606/1‑91 (MQ=255)

                            caaTTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTaa                                                                >  1:296004/1‑91 (MQ=255)

                              aTTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAagg                                                              >  1:662607/1‑91 (MQ=255)

                               ttATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAagga                                                             >  1:973116/1‑91 (MQ=255)

                                  tatGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAggagga                                                          <  1:1091600/91‑1 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTCGTATTTTTCGTTTATAATCTAAGGAGGat                                                         >  1:3331383/1‑91 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         >  1:956848/1‑91 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         >  1:956794/1‑91 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         <  1:71395/91‑1 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         <  1:4036554/91‑1 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         <  1:1336651/91‑1 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         >  1:3790176/1‑91 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         >  1:3790126/1‑91 (MQ=255)

                                   atGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGat                                                         >  1:3605898/1‑91 (MQ=255)

                                    tGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGata                                                        >  1:4093346/1‑91 (MQ=255)

                                    tGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGata                                                        >  1:1787480/1‑91 (MQ=255)

                                      aTAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGatata                                                      >  1:2527659/1‑91 (MQ=255)

                                        aaaGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATc                                                    >  1:2234969/1‑91 (MQ=255)

                                        aaaGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATc                                                    >  1:3256138/1‑91 (MQ=255)

                                             gCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGc                                               >  1:1872082/1‑91 (MQ=255)

                                             gCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGc                                               <  1:2601294/91‑1 (MQ=255)

                                             ctaaatgttagtttaattaacaacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGc                                               >  1:1488068‑M2/46‑91 (MQ=255)

                                             ctaaatgttagtttaattaacaacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGc                                               >  1:1488077‑M2/46‑91 (MQ=255)

                                             ctaaatgttagtttaattaacaacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGc                                               >  1:2328166‑M2/46‑91 (MQ=255)

                                              cAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCa                                              >  1:2553572/1‑91 (MQ=255)

                                               aaTAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAg                                             <  1:3566111/91‑1 (MQ=255)

                                                   agtagtTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTAcc                                         >  1:1937417/1‑91 (MQ=255)

                                                   agtagtTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTAcc                                         <  1:2897952/91‑1 (MQ=255)

                                                   agtagtTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCGAAGGAGGATATATCATGGCAGTAcc                                         >  1:3864307/1‑91 (MQ=255)

                                                      AGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCaaa                                      >  1:3824607‑M1/1‑91 (MQ=255)

                                                      AGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCaaa                                      >  1:2194017‑M1/1‑91 (MQ=255)

                                                       gtttaattaacaacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCaaaa                                     >  1:2917891‑M2/36‑91 (MQ=255)

                                                       GTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCaaaa                                     <  1:1033285‑M1/91‑1 (MQ=255)

                                                       GTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCaaaa                                     <  1:752854‑M1/91‑1 (MQ=255)

                                                       GTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCaaaa                                     <  1:3826618‑M1/91‑1 (MQ=255)

                                                         ttaattaacaacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAaag                                   >  1:3940201‑M2/34‑91 (MQ=255)

                                                         ttaattaacaacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAaag                                   >  1:3936905‑M2/34‑91 (MQ=255)

                                                         TTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAaag                                   <  1:1857785‑M1/91‑1 (MQ=255)

                                                         TTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAaag                                   <  1:3986449‑M1/91‑1 (MQ=255)

                                                         TTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATGTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAaag                                   >  1:3308309‑M1/1‑91 (MQ=255)

                                                            ATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAaagaag                                >  1:1597355‑M1/1‑91 (MQ=255)

                                                              TAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAgaagaa                              <  1:1048446‑M1/91‑1 (MQ=255)

                                                               AATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAAc                             >  1:685939‑M1/1‑91 (MQ=255)

                                                               AATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAAc                             >  1:1013782‑M1/1‑91 (MQ=255)

                                                               AATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAAc                             >  1:1013746‑M1/1‑91 (MQ=255)

                                                                ATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACt                            >  1:2823196‑M1/1‑91 (MQ=255)

                                                                ATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACt                            >  1:3699467‑M1/1‑91 (MQ=255)

                                                                ATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACt                            <  1:917915‑M1/91‑1 (MQ=255)

                                                                ATGATATAATGTTGTTAATTAAACTAACATTTAGTATCTTTCGTTTATAATCTAAGGAGGATATAGCATGGCAGTACCAAAAAGACGAACt                            <  1:3861884‑M1/91‑1 (MQ=255)

                                                                 tGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACtt                           >  1:4032285/1‑91 (MQ=255)

                                                                 caacattatatcattaattaaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACtt                           >  1:4011317‑M2/26‑91 (MQ=255)

                                                                   atatAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCt                         >  1:3364641/1‑91 (MQ=255)

                                                                   atatAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCt                         <  1:1211937/91‑1 (MQ=255)

                                                                     ataATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaa                       >  1:2730483/1‑91 (MQ=255)

                                                                     ataATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaa                       <  1:2279397/91‑1 (MQ=255)

                                                                     ataATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGCAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaa                       >  1:3577002/1‑91 (MQ=255)

                                                                      taATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaaa                      <  1:2986859/91‑1 (MQ=255)

                                                                      taATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaaa                      <  1:2987911/91‑1 (MQ=255)

                                                                      taATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaaa                      <  1:1261205/91‑1 (MQ=255)

                                                                      taATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaaa                      <  1:3710898/91‑1 (MQ=255)

                                                                      taATGTTGTTAATTAAACTAACATTTAGCATTTTTCTTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTaaa                      >  1:1758014/1‑91 (MQ=255)

                                                                        aTGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAAc                    <  1:426593/91‑1 (MQ=255)

                                                                          gttgttAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTa                  >  1:4125386/1‑91 (MQ=255)

                                                                              ttaattaaactaACATTTAGTATTTTTCGTTGATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGaaa              <  1:62941‑M2/79‑1 (MQ=255)

                                                                                    aaactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAaaacaa        >  1:294453‑M2/7‑91 (MQ=255)

                                                                                     aactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAaaacaaa       >  1:438128‑M2/6‑91 (MQ=255)

                                                                                     aactaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAaaacaaa       >  1:2606798‑M2/6‑91 (MQ=255)

                                                                                       ctaACATTTAGTATTTTTCGTTTATAATCTACGGAGGATATATCATGGCAGTACCAATAAGAAGAACTTCTAAAACTAGAAAAAACAAACg     >  1:3690214‑M2/4‑91 (MQ=255)

                                                                                       ctaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATTATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACg     <  1:4138223‑M2/88‑1 (MQ=255)

                                                                                       ctaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACg     >  1:622533‑M2/4‑91 (MQ=255)

                                                                                       ctaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACg     >  1:1503464‑M2/4‑91 (MQ=255)

                                                                                       ctaACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATAATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACg     <  1:4138912‑M2/88‑1 (MQ=255)

                                                                                         aACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACGTc   >  1:2390806‑M2/2‑91 (MQ=255)

                                                                                          aCATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAAcgtcg  >  1:2808371/1‑91 (MQ=255)

AGTTGATCCAAGGCTTCAAAAATTACAACAATTATATGATAAAGAGCAATAAGTAGTTTAATTAATGATATAATGTTGTTAATTAAACTAACATTTAGTATTTTTCGTTTATAATCTAAGGAGGATATATCATGGCAGTACCAAAAAGAAGAACTTCTAAAACTAGAAAAAACAAACGTCG  >  USA300TCH1516_ALE/1135840‑1136020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.