BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1199293	92 (0.940)	9 (0.100)	8/144	NT	8.7%	intergenic (+20/‑63)	USA300HOU_RS05980/USA300HOU_RS05985	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 1199312	106 (1.200)	9 (0.100)	8/144	NT	8.7%	intergenic (+39/‑44)	USA300HOU_RS05980/USA300HOU_RS05985	hypothetical protein/hypothetical protein

Only 100 of 143 total aligned reads displayed.

CCAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTA  >  USA300TCH1516_ALE/1199222‑1199402

ccAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTa                                                                                            <  1:2931257/91‑1 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         <  1:2514659‑M2/91‑4 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:2939348‑M2/1‑88 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:2286900‑M2/1‑88 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:3818323‑M2/1‑88 (MQ=255)

   aaaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:2939305‑M2/1‑88 (MQ=255)

   aaaaGGGTTACGCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcc                                                                                         >  1:3763200‑M2/1‑88 (MQ=255)

    aaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcct                                                                                        <  1:1274263‑M2/91‑5 (MQ=255)

    aaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcct                                                                                        >  1:2201443‑M2/1‑87 (MQ=255)

    aaaGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcct                                                                                        >  1:3870420‑M2/1‑87 (MQ=255)

       gggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgt                                                                                     <  1:1188743‑M2/91‑8 (MQ=255)

       gggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgt                                                                                     <  1:1188819‑M2/91‑8 (MQ=255)

        ggTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgtt                                                                                    <  1:3454112‑M2/91‑9 (MQ=255)

           tACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGttttt                                                                                 >  1:1665609/1‑91 (MQ=255)

               ccAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGata                                                                             <  1:1662438/91‑1 (MQ=255)

                 aaaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATg                                                                           <  1:3714671/91‑1 (MQ=255)

                  aaTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGc                                                                          >  1:1526729/1‑91 (MQ=255)

                   aTCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCa                                                                         <  1:2766555/91‑1 (MQ=255)

                    tCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAt                                                                        <  1:3949253/91‑1 (MQ=255)

                    tCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAt                                                                        <  1:520246/91‑1 (MQ=255)

                    tCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAt                                                                        <  1:520437/91‑1 (MQ=255)

                     cTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtt                                                                       >  1:2468768/1‑91 (MQ=255)

                     cTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtt                                                                       <  1:2840114/91‑1 (MQ=255)

                     cTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtt                                                                       >  1:2470042/1‑91 (MQ=255)

                     cTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtt                                                                       <  1:3604270/91‑1 (MQ=255)

                      tttAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAttt                                                                      <  1:1677595/91‑1 (MQ=255)

                      tgtAATTGAATTAAAATCCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAttt                                                                      >  1:2737099/3‑91 (MQ=38)

                       ttAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtttt                                                                     >  1:3657828/1‑91 (MQ=255)

                       ttAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtttt                                                                     >  1:1776990/1‑91 (MQ=255)

                       ttAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAtttt                                                                     >  1:1331131/1‑91 (MQ=255)

                        tAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAttttt                                                                    >  1:1517678/1‑91 (MQ=255)

                        tAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAttttt                                                                    <  1:1388096/91‑1 (MQ=255)

                        tAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCAttttt                                                                    >  1:2642619/1‑91 (MQ=255)

                         aaTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTc                                                                   >  1:2250672/1‑91 (MQ=255)

                         aaTTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTc                                                                   >  1:1053743/1‑91 (MQ=255)

                           ttGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTg                                                                 <  1:3716975/91‑1 (MQ=255)

                           ttGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTg                                                                 <  1:745268/91‑1 (MQ=255)

                            tGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGa                                                                <  1:1134392/91‑1 (MQ=255)

                                ttttAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAatat                                                            >  1:3785817/1‑91 (MQ=255)

                                    aaTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAgg                                                        <  1:1964653/91‑1 (MQ=255)

                                     aTTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAggg                                                       <  1:4027353/91‑1 (MQ=255)

                                       tCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCa                                                     >  1:3879648/1‑91 (MQ=255)

                                        cAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCaa                                                    >  1:2066744/1‑91 (MQ=255)

                                          aTTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATa                                                  <  1:445900/91‑1 (MQ=255)

                                               aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             >  1:1557816/1‑91 (MQ=255)

                                               aaTAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATgg                                             >  1:3225003/1‑91 (MQ=255)

                                                  aaaTTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAt                                          >  1:4047908/1‑91 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:2690967/91‑1 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:1943684/91‑1 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:1295970/91‑1 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:2743209/91‑1 (MQ=255)

                                                     ttAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTAtttt                                       <  1:710836/91‑1 (MQ=255)

                                                      tAAGCGACATAACGAGGCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatt                                      <  1:1895069‑M2/91‑55 (MQ=255)

                                                        aGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtata                                    <  1:502613/91‑1 (MQ=255)

                                                        aGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTtata                                    <  1:4085966/91‑1 (MQ=255)

                                                         gCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATaa                                   <  1:2429774/91‑1 (MQ=255)

                                                         gCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATaa                                   <  1:1940804/91‑1 (MQ=255)

                                                          cGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAt                                  >  1:2571211/1‑91 (MQ=255)

                                                             cATATCGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAtttt                               <  1:3450447/91‑1 (MQ=255)

                                                              aTAACGAGGCAACGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAAttttt                              >  1:3195852/1‑91 (MQ=255)

                                                                 aCGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTa                           >  1:2794000/1‑91 (MQ=255)

                                                                  cGAGGCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccct                          <  1:3837499‑M2/91‑67 (MQ=255)

                                                                  cGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTaa                          >  1:2136258/1‑91 (MQ=255)

                                                                  cGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTaa                          >  1:2213353/1‑91 (MQ=255)

                                                                   gAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAg                         >  1:2564231/1‑91 (MQ=255)

                                                                     ggCAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttt                       <  1:2145408‑M2/91‑70 (MQ=255)

                                                                       cAAGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttttg                     <  1:845703‑M2/91‑72 (MQ=255)

                                                                       cAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAg                     <  1:457719/91‑1 (MQ=255)

                                                                        aaGGGTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttttgg                    <  1:3385250‑M2/91‑73 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    >  1:1158542/1‑91 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    >  1:3311952/1‑91 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    <  1:2512235/91‑1 (MQ=255)

                                                                        aaGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGt                    >  1:933020/1‑91 (MQ=255)

                                                                         aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   >  1:4075962/1‑91 (MQ=255)

                                                                         aGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTg                   <  1:940335/91‑1 (MQ=255)

                                                                          gggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGa                  >  1:3013076/1‑91 (MQ=255)

                                                                          gggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGa                  >  1:3013292/1‑91 (MQ=255)

                                                                           ggTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGTAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAt                 >  1:1810639/1‑91 (MQ=255)

                                                                            gTACGTGATGCTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGAtt                <  1:3972155/91‑1 (MQ=255)

                                                                            gTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttttggaata                >  1:1588136‑M2/1‑15 (MQ=255)

                                                                            gTACATGATACTTTAgcctcgttatgtcgcttaatttattgtaattgaattaaaatccaattaaagatttggagtaaccctttttggaata                <  1:3367947‑M2/91‑77 (MQ=255)

                                                                             tACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTa               >  1:627898/1‑91 (MQ=255)

                                                                              aCATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTaa              <  1:3884990/91‑1 (MQ=255)

                                                                               cATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGAGATTAAc             >  1:2080311/1‑91 (MQ=255)

                                                                                aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACa            <  1:420705/91‑1 (MQ=255)

                                                                                aTGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACa            >  1:3435199/1‑91 (MQ=255)

                                                                                 tGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACAt           >  1:472454/1‑91 (MQ=255)

                                                                                 tGATACTTTAGCCTCGCTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTATCAt           >  1:2376963/1‑91 (MQ=255)

                                                                                  gATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATa          <  1:4104048/91‑1 (MQ=255)

                                                                                  gATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATa          <  1:1396950/91‑1 (MQ=255)

                                                                                   aTACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAg         <  1:3081783/91‑1 (MQ=255)

                                                                                   aTACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAg         <  1:3081296/91‑1 (MQ=255)

                                                                                   aTACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAg         <  1:2370905/91‑1 (MQ=255)

                                                                                    tACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGACTAACATAGa        >  1:3722203/1‑91 (MQ=255)

                                                                                     aCTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGat       <  1:2471158/91‑1 (MQ=255)

                                                                                       tttAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGatat     >  1:3553955/1‑91 (MQ=255)

                                                                                         tAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATAttt   >  1:1753077/1‑91 (MQ=255)

                                                                                         tAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATAttt   >  1:355889/1‑91 (MQ=255)

                                                                                         tAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATAttt   >  1:2438528/1‑91 (MQ=255)

                                                                                          aGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTa  <  1:2275725/91‑1 (MQ=255)

CCAAAAAGGGTTACTCCAAATCTTTAATTGGATTTTAATTCAATTACAATAAATTAAGCGACATAACGAGGCAAGGGTACATGATACTTTAGCCTCGTTTTTGATATGCATTTTTCTGAATATAAGGGCAATAGATGGTATTTTATAATTTTTTTAAGGTAGTGATTAACATAGATATTTA  >  USA300TCH1516_ALE/1199222‑1199402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.