BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1265497 =	98 (1.000)	15 (0.190)	8/130	NT	15.1%	intergenic (+5/‑168)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA
*	?	USA300TCH1516_ALE	1265543 =	89 (1.110)	15 (0.190)	8/130	NT	15.1%	intergenic (+51/‑122)	femA_1/dprA	Aminoacyltransferase FemA/DNA processing protein DprA

Only 100 of 172 total aligned reads displayed.

AATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGA  >  USA300TCH1516_ALE/1265453‑1265633

aaTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACtttt                                                                                            >  1:3227603/1‑91 (MQ=255)

 aTTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTc                                                                                           >  1:1402383/1‑91 (MQ=255)

   tCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCAc                                                                                         <  1:3647496/91‑1 (MQ=255)

      atataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACttt                                                                                      <  1:3810992/91‑1 (MQ=255)

       tataAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACtttt                                                                                     <  1:775592/91‑1 (MQ=255)

          aaaTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTaa                                                                                  >  1:2042007/1‑91 (MQ=255)

            aTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTatta                                                                                <  1:2262354/91‑4 (MQ=255)

            aTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGt                                                                                <  1:2377431/91‑1 (MQ=255)

            aTTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGt                                                                                <  1:158816/91‑1 (MQ=255)

              ttGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCa                                                                              >  1:404115/1‑91 (MQ=255)

               tGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAg                                                                             <  1:2313492/91‑1 (MQ=255)

               tGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAg                                                                             <  1:1392245/91‑1 (MQ=255)

                gCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGt                                                                            >  1:495605/1‑91 (MQ=255)

                   aaaCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtt                                                                         >  1:1282651/1‑91 (MQ=255)

                    aaCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAGTTTTAAATTCTTTCCAACATACATTTCACTTTTTAAGTCAGTAttt                                                                        <  1:3285827/91‑1 (MQ=255)

                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                                       >  1:3165297/1‑91 (MQ=255)

                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                                       <  1:3824410/91‑1 (MQ=255)

                     aCTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAtttt                                                                       >  1:3193908/1‑91 (MQ=255)

                      cTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTAttttt                                                                      <  1:2138681/91‑1 (MQ=255)

                       ttatttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTa                                                                     >  1:138660/1‑91 (MQ=255)

                          tttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTc                                                                  >  1:1844948/1‑91 (MQ=255)

                           ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                                                 >  1:3839403/1‑91 (MQ=255)

                           ttatAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTcc                                                                 <  1:2041895/91‑1 (MQ=255)

                            tataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCt                                                                >  1:3901575/1‑91 (MQ=255)

                             ataAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCtt                                                               >  1:1190464/1‑91 (MQ=255)

                              taAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTa                                                              >  1:2348274/1‑91 (MQ=255)

                               aaGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaa                                                             <  1:1698824/91‑1 (MQ=255)

                               aaGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaa                                                             >  1:536352/1‑91 (MQ=255)

                                 ggTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaaa                                                           >  1:2575165/1‑91 (MQ=255)

                                 ggTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTaaaa                                                           <  1:1092447/91‑1 (MQ=255)

                                  gTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAAt                                                          >  1:3122792/1‑91 (MQ=255)

                                    ttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                                        >  1:432840/1‑91 (MQ=255)

                                    ttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                                        <  1:1506215/91‑1 (MQ=255)

                                    ttAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATaa                                                        >  1:1352859/1‑91 (MQ=255)

                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                                                      <  1:1010903/91‑1 (MQ=255)

                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                                                      <  1:1010883/91‑1 (MQ=255)

                                      aaTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACa                                                      >  1:1946260/1‑91 (MQ=255)

                                       aTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATTACAt                                                     >  1:3616668/1‑91 (MQ=255)

                                       aTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACAt                                                     >  1:3388121/1‑91 (MQ=255)

                                       aTTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACAt                                                     >  1:3388524/1‑91 (MQ=255)

                                          ataAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTAc                                                  >  1:447167/1‑91 (MQ=255)

                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                                <  1:4079746‑M1/91‑1 (MQ=255)

                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                                <  1:3954371‑M1/91‑1 (MQ=255)

                                            AAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACAt                                                >  1:432151‑M1/1‑91 (MQ=255)

                                               GTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGa                                             <  1:2673459‑M1/91‑1 (MQ=255)

                                                 atgttggaaagaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACa                                           >  1:2947314‑M2/42‑91 (MQ=255)

                                                 ATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACa                                           <  1:2163515‑M1/91‑1 (MQ=255)

                                                  TGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                                          <  1:2427741‑M1/91‑1 (MQ=255)

                                                  TGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                                          <  1:1461164‑M1/91‑1 (MQ=255)

                                                  TGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                                          >  1:1572538‑M1/1‑91 (MQ=255)

                                                  TGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                                          >  1:259415‑M1/1‑91 (MQ=255)

                                                  TGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACaa                                          <  1:2173720‑M1/91‑1 (MQ=255)

                                                   gttggaaagaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAAt                                         >  1:1276840‑M2/40‑91 (MQ=255)

                                                    TTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                                        <  1:3682934‑M1/91‑1 (MQ=255)

                                                    TTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                                        <  1:1537075‑M1/91‑1 (MQ=255)

                                                    TTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                                        <  1:3006980‑M1/91‑1 (MQ=255)

                                                    TTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                                        <  1:3006561‑M1/91‑1 (MQ=255)

                                                    TTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATg                                        >  1:4093285‑M1/1‑91 (MQ=255)

                                                     TGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGt                                       <  1:3635345‑M1/91‑1 (MQ=255)

                                                      ggaaagaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt                                      >  1:963710‑M2/37‑91 (MQ=255)

                                                      GGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtt                                      >  1:3248361‑M1/1‑91 (MQ=255)

                                                        AAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTGAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGtttt                                    >  1:4139154‑M1/1‑91 (MQ=255)

                                                         aagaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGttttt                                   >  1:745913‑M2/34‑91 (MQ=255)

                                                         aagaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGttttt                                   >  1:745272‑M2/34‑91 (MQ=255)

                                                         AATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGttttt                                   >  1:372453‑M1/1‑91 (MQ=255)

                                                           gaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                                 >  1:3145447‑M2/32‑91 (MQ=255)

                                                           gaatttaaaatttcaatttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGt                                 >  1:3145473‑M2/32‑91 (MQ=255)

                                                              aaattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTAtt                              >  1:3146988/1‑91 (MQ=255)

                                                               aattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTa                             >  1:1186202/1‑91 (MQ=255)

                                                               aattTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTa                             >  1:670076/1‑91 (MQ=255)

                                                                 ttttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGa                           <  1:315949/91‑1 (MQ=255)

                                                                 ttttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGa                           <  1:3582394/91‑1 (MQ=255)

                                                                 ttttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGa                           <  1:2628039/91‑1 (MQ=255)

                                                                  tttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaa                          >  1:366600/1‑91 (MQ=255)

                                                                  tttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaa                          <  1:1610873/91‑1 (MQ=255)

                                                                   ttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaaa                         >  1:587825/1‑91 (MQ=255)

                                                                   ttAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGaaa                         >  1:562715/1‑91 (MQ=255)

                                                                     aaaTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATg                       >  1:191098/1‑91 (MQ=255)

                                                                     aaaTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATg                       >  1:3990006/1‑91 (MQ=255)

                                                                     aaaTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATg                       >  1:2833529/1‑91 (MQ=255)

                                                                       aTTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTa                     >  1:2520591/1‑91 (MQ=255)

                                                                         tCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTaaa                   <  1:282609/91‑1 (MQ=255)

                                                                         tCTTTCCAACATACTTTTCACTTTTTAAGTCAGCATTCTTACTCCTCAAAATAACATTAGATCGACAATGTTTTTGTATTAGAAATGTaaa                   >  1:3316307/1‑91 (MQ=255)

                                                                            ttccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACa                <  1:3512100‑M2/77‑1 (MQ=255)

                                                                             tccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACaa               <  1:1264331‑M2/78‑1 (MQ=255)

                                                                              ccaacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACaaa              >  1:2269967‑M2/13‑91 (MQ=255)

                                                                                aacatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACaaaaa            >  1:590479‑M2/11‑91 (MQ=255)

                                                                                 acatactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAAt           >  1:533128‑M2/10‑91 (MQ=255)

                                                                                   atactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAg         <  1:3084027‑M2/84‑1 (MQ=255)

                                                                                    tactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATagc        >  1:479920‑M2/7‑90 (MQ=255)

                                                                                    tactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGa        >  1:3869827‑M2/7‑91 (MQ=255)

                                                                                    tactttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGa        >  1:1232290‑M2/7‑91 (MQ=255)

                                                                                     actttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGaa       <  1:2345014‑M2/86‑1 (MQ=255)

                                                                                     actttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGaa       <  1:1508996‑M2/86‑1 (MQ=255)

                                                                                      ctttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAat      >  1:3635836‑M2/5‑91 (MQ=255)

                                                                                       tttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCTACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAata     <  1:3594684‑M2/88‑1 (MQ=255)

                                                                                       tttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAGTGTTTTTGTATTAGAAATGTAAAACAAAAATAGAata     <  1:3497042‑M2/88‑1 (MQ=255)

                                                                                       tttTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAata     >  1:3787978‑M2/4‑91 (MQ=255)

                                                                                         tTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATg   <  1:2000081‑M2/90‑1 (MQ=255)

                                                                                          tCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGa  <  1:2865112/91‑1 (MQ=255)

AATTCTATATAAATTTGCAAAACTTATTTATAAGGTTTAATTATAAAGTATGTTGGAAATTGAAATTTTAAATTCTTTCCAACATACTTTTCACTTTTTAAGTCAGTATTTTTACTCCTTAAAATAACATTACATCGACAATGTTTTTGTATTAGAAATGTAAAACAAAAATAGAATATGA  >  USA300TCH1516_ALE/1265453‑1265633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.