BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1283482 =	136 (1.380)	10 (0.120)	7/138	NT	8.4%	coding (47/4317 nt)	polC_1	DNA polymerase III PolC‑type
*	?	USA300TCH1516_ALE	1283518 =	101 (1.190)	10 (0.120)	7/138	NT	8.4%	coding (83/4317 nt)	polC_1	DNA polymerase III PolC‑type

Only 100 of 151 total aligned reads displayed.

ATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGA  >  USA300TCH1516_ALE/1283430‑1283608

aTTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAAtt                                                                                          >  1:3604367/1‑91 (MQ=255)

aTTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAAtt                                                                                          <  1:3929487/91‑1 (MQ=255)

  tGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCa                                                                                        >  1:748209/1‑91 (MQ=255)

   gTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAg                                                                                       <  1:3966016/91‑1 (MQ=255)

    tCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAgg                                                                                      >  1:255631/1‑91 (MQ=255)

     cTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGt                                                                                     >  1:4044062/1‑91 (MQ=255)

     cTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGt                                                                                     <  1:2970734/91‑1 (MQ=255)

      ttGGCAATGAGAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTg                                                                                    <  1:2540874/91‑1 (MQ=255)

       tGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGa                                                                                   <  1:4077459/91‑1 (MQ=255)

        ggCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTGAATTCAGGTGaa                                                                                  >  1:1360558/1‑91 (MQ=255)

        ggCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGaa                                                                                  >  1:3402490/1‑91 (MQ=255)

         gCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAAc                                                                                 <  1:715707/91‑1 (MQ=255)

         gCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAAc                                                                                 <  1:1805046/91‑1 (MQ=255)

          cAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACt                                                                                >  1:1247205/1‑91 (MQ=255)

           aaTGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTg                                                                               <  1:2268841/91‑1 (MQ=255)

           aaTGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTg                                                                               >  1:3744067/1‑91 (MQ=255)

            aTGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCACGTGAACTGa                                                                              >  1:3969192/1‑91 (MQ=255)

              gACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGaca                                                                            <  1:2807149/91‑1 (MQ=255)

                  gagCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGta                                                                        <  1:3922956/91‑1 (MQ=255)

                   agCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtat                                                                       >  1:2365631/1‑91 (MQ=255)

                   agCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtat                                                                       >  1:562416/1‑91 (MQ=255)

                   agCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtat                                                                       <  1:3018796/91‑1 (MQ=255)

                   agCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtat                                                                       >  1:562576/1‑91 (MQ=255)

                   agCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtat                                                                       >  1:3375708/1‑91 (MQ=255)

                    gCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtata                                                                      <  1:405195/91‑1 (MQ=255)

                    gCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGtata                                                                      <  1:2882975/91‑1 (MQ=255)

                     caacaaAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAg                                                                     >  1:758071/1‑91 (MQ=255)

                      aacaaAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTACATTCAGGTGAACTGACACGTATAGa                                                                    >  1:3863361/1‑91 (MQ=255)

                       acaaAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGAt                                                                   <  1:3220158/91‑1 (MQ=255)

                        caaAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATg                                                                  >  1:2345159/1‑91 (MQ=255)

                        caaAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATg                                                                  <  1:2325984/91‑1 (MQ=255)

                          aaaaTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGtt                                                                >  1:949734/1‑91 (MQ=255)

                          aaaaTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGtt                                                                <  1:2601803/91‑1 (MQ=255)

                            aaTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTc                                                              >  1:1875207/1‑91 (MQ=255)

                            aaTTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTc                                                              <  1:3035039/91‑1 (MQ=255)

                               ttAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAACTTCAGGTGAACTGACACGTATAGATGTTTCTaa                                                           >  1:3397851/1‑91 (MQ=255)

                               ttAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTaa                                                           >  1:497216/1‑91 (MQ=255)

                                tAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAAc                                                          <  1:3359606/91‑1 (MQ=255)

                                tAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAAc                                                          >  1:1423095/1‑91 (MQ=255)

                                 aaaGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGCTGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACa                                                         >  1:1353782/1‑91 (MQ=255)

                                 aaaGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACa                                                         <  1:2132536/91‑1 (MQ=255)

                                 aaaGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACa                                                         <  1:2132267/91‑1 (MQ=255)

                                  aaGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACaa                                                        >  1:2004352/1‑91 (MQ=255)

                                   aGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACaaa                                                       >  1:2803488/1‑91 (MQ=255)

                                     tgcttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACaaaaa                                                     <  1:2186065/91‑1 (MQ=255)

                                     tgcttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACaaaaa                                                     <  1:1132187/91‑1 (MQ=255)

                                     tgcttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACaaaaa                                                     <  1:3235292/91‑1 (MQ=255)

                                      gcttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAAc                                                    >  1:849431/1‑91 (MQ=255)

                                      gcttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAAc                                                    <  1:2863279/91‑1 (MQ=255)

                                      gcttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAAc                                                    <  1:3241706/91‑1 (MQ=255)

                                        ttgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAg                                                  >  1:1720659/1‑91 (MQ=255)

                                         tgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGa                                                 >  1:650139/1‑91 (MQ=255)

                                         tgctGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGa                                                 <  1:3893523/91‑1 (MQ=255)

                                             gATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACAt                                             >  1:3063465/1‑91 (MQ=255)

                                              ctgaatttaaaatttcagcatctaattgatttgaaattttaaTTTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATg                                            >  1:166587‑M2/43‑91 (MQ=255)

                                              aTCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATg                                            <  1:1584280/91‑1 (MQ=255)

                                              aTCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATg                                            >  1:1476227/1‑91 (MQ=255)

                                              aTCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATg                                            <  1:2971400/91‑1 (MQ=255)

                                              aTCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATg                                            >  1:2484834/1‑91 (MQ=255)

                                               tCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATgg                                           <  1:779063/91‑1 (MQ=255)

                                               tCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATgg                                           <  1:1558615/91‑1 (MQ=255)

                                               tCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATgg                                           <  1:2577337/91‑1 (MQ=255)

                                                cAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATggg                                          <  1:497587/91‑1 (MQ=255)

                                                 aaaTTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGa                                         <  1:1112798/91‑1 (MQ=255)

                                                    TTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAAtt                                      >  1:1159398‑M1/1‑91 (MQ=255)

                                                    TTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAAtt                                      >  1:1813409‑M1/1‑91 (MQ=255)

                                                    TTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAAtt                                      >  1:101794‑M1/1‑91 (MQ=255)

                                                      aaaatttcagcatctaattgatttgaaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTc                                    >  1:1450819‑M2/35‑91 (MQ=255)

                                                       aaatttcggcatctaattgatttgaaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCa                                   >  1:2413185‑M2/34‑91 (MQ=255)

                                                       aaatttcagcatctaattgatttgaaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCa                                   >  1:1038997‑M2/34‑91 (MQ=255)

                                                       AAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCa                                   >  1:3218730‑M1/1‑91 (MQ=255)

                                                       AAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCa                                   >  1:907757‑M1/1‑91 (MQ=255)

                                                        aatttcagcatctaattgatttgaaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATGTCat                                  >  1:1919654‑M2/33‑91 (MQ=255)

                                                        AATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCat                                  <  1:3527600‑M1/91‑1 (MQ=255)

                                                        AATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCat                                  >  1:3721021‑M1/1‑91 (MQ=255)

                                                        AATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCat                                  <  1:2682203‑M1/91‑1 (MQ=255)

                                                         atttcagcatctaattgatttgaaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCata                                 >  1:1521897‑M2/32‑91 (MQ=255)

                                                          tttcagcatctaattgatttgaaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCatat                                >  1:2615670‑M2/31‑91 (MQ=255)

                                                           TTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATAtt                               <  1:3088868‑M1/91‑1 (MQ=255)

                                                              AAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACa                            >  1:3781109‑M1/1‑91 (MQ=255)

                                                                  cAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATattacattac                        <  1:150215/91‑1 (MQ=255)

                                                                  cAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATattacattac                        <  1:1484744/91‑1 (MQ=255)

                                                                   aaTTAGATGCTGAAATTTTAAATTCTGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTAcc                       <  1:3850115/91‑1 (MQ=255)

                                                                   aaTTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTAcc                       <  1:3361761/91‑1 (MQ=255)

                                                                    aTTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACca                      <  1:3399852/91‑1 (MQ=255)

                                                                     ttAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACcac                     <  1:1766895/91‑1 (MQ=255)

                                                                     ttAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACcac                     >  1:696065/1‑91 (MQ=255)

                                                                     ttAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACcac                     <  1:2851922/91‑1 (MQ=255)

                                                                      tAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACcaca                    >  1:2040699/1‑91 (MQ=255)

                                                                        gATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAAt                  >  1:1296468/1‑91 (MQ=255)

                                                                            cTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCtt              >  1:176471/1‑91 (MQ=255)

                                                                               aaattttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGc           >  1:2666188‑M2/10‑91 (MQ=255)

                                                                                    ttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATg      <  1:3416385‑M2/87‑1 (MQ=255)

                                                                                    ttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATg      >  1:3157078‑M2/5‑91 (MQ=255)

                                                                                    ttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATg      >  1:3157192‑M2/5‑91 (MQ=255)

                                                                                    ttaaATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAACTCATg      >  1:2012860‑M2/5‑91 (MQ=255)

                                                                                       aATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAg   >  1:2482247‑M2/2‑91 (MQ=255)

                                                                                       aATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAg   >  1:1114130‑M2/2‑91 (MQ=255)

                                                                                        aTTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGa  <  1:2028914/91‑1 (MQ=255)

                                                                                        aTTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGa  <  1:2647751/91‑1 (MQ=255)

ATTGTCTTGGCAATGACAGAGCAACAAAAATTTAAAGTGCTTGCTGATCAAATTAAAATTTCAAATCAATTAGATGCTGAAATTTTAAATTCAGGTGAACTGACACGTATAGATGTTTCTAACAAAAACAGAACATGGGAATTTCATATTACATTACCACAATTCTTAGCTCATGAAGA  >  USA300TCH1516_ALE/1283430‑1283608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.