BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1353906	89 (0.910)	10 (0.120)	7/134	NT	10.2%	intergenic (+99/+44)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein
*	?	USA300TCH1516_ALE	= 1353932	101 (1.230)	10 (0.120)	7/134	NT	10.2%	intergenic (+125/+18)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein

Only 100 of 139 total aligned reads displayed.

TACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTC  >  USA300TCH1516_ALE/1353842‑1354021

taCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGa                                                                                           <  1:672769/91‑1 (MQ=255)

  cTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtt                                                                                         <  1:3841706‑M2/91‑3 (MQ=255)

   ttGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtta                                                                                        >  1:847217‑M2/1‑88 (MQ=255)

   ttGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtta                                                                                        >  1:847273‑M2/1‑88 (MQ=255)

      aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                     >  1:620611‑M2/1‑85 (MQ=255)

      aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                     >  1:1652143‑M2/1‑85 (MQ=255)

      aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                     >  1:1651663‑M2/1‑85 (MQ=255)

      aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAAATTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                     >  1:4154183‑M2/1‑85 (MQ=255)

       aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattat                                                                                    <  1:4073367‑M2/91‑8 (MQ=255)

       aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattat                                                                                    >  1:1360322‑M2/1‑84 (MQ=255)

       aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattat                                                                                    >  1:2236799‑M2/1‑84 (MQ=255)

        gCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatg                                                                                   <  1:3627834‑M2/91‑9 (MQ=255)

           tCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                                                <  1:2713094‑M2/91‑12 (MQ=255)

            cGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAgtattatgcctt                                                                               <  1:2522352‑M2/91‑13 (MQ=255)

                    tattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTa                                                                       <  1:305253/91‑1 (MQ=255)

                     attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                      <  1:1574866/91‑1 (MQ=255)

                     attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                      >  1:1961389/1‑91 (MQ=255)

                     attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                      <  1:1574857/91‑1 (MQ=255)

                      ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                     <  1:3781559/91‑1 (MQ=255)

                      ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                     <  1:2845384/91‑1 (MQ=255)

                          cATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGaa                                                                 >  1:2263749/1‑91 (MQ=255)

                              aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                             <  1:1454592/91‑1 (MQ=255)

                              aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                             >  1:2103659/1‑91 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                            >  1:810845/1‑91 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                            <  1:86458/91‑1 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                            <  1:1863492/91‑1 (MQ=255)

                               aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                            <  1:883490/91‑1 (MQ=255)

                                tttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGc                                                           <  1:2050251/91‑1 (MQ=255)

                                tttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGc                                                           >  1:389245/1‑91 (MQ=255)

                                tttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATACAGc                                                           >  1:3736160/1‑91 (MQ=255)

                                 ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                          >  1:2997992/1‑91 (MQ=255)

                                 ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                          <  1:1832912/91‑1 (MQ=255)

                                 ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                          <  1:2287007/91‑1 (MQ=255)

                                   atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                        >  1:1784508/1‑91 (MQ=255)

                                   atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                        <  1:705904/91‑1 (MQ=255)

                                     atataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATTGAGCGTAATGGAtgattatgcctttaaattatttctatatttaaattta                                                      <  1:1878064‑M2/91‑38 (MQ=255)

                                      tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                     <  1:2715519/91‑1 (MQ=255)

                                      tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                     <  1:804724/91‑1 (MQ=255)

                                      tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                     <  1:1365479/91‑1 (MQ=255)

                                      tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                     <  1:2614031/91‑1 (MQ=255)

                                       ataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAtt                                                    >  1:2326987/1‑91 (MQ=255)

                                       ataGAAATAATTGAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAtt                                                    >  1:3177436/1‑91 (MQ=255)

                                           aaaTAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGAt                                                >  1:2246603/1‑91 (MQ=255)

                                           aaaTAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGAt                                                <  1:1929373/91‑1 (MQ=255)

                                              taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                             >  1:3120280/1‑91 (MQ=255)

                                              taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                             >  1:1928022/1‑91 (MQ=255)

                                               aatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAc                                            <  1:14958/91‑1 (MQ=255)

                                               aatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAc                                            <  1:4086084/91‑1 (MQ=255)

                                               aatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAc                                            <  1:4085559/91‑1 (MQ=255)

                                                atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                           <  1:3496642/91‑1 (MQ=255)

                                                atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                           <  1:3496875/91‑1 (MQ=255)

                                                atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                           >  1:1574898/1‑91 (MQ=255)

                                                atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                           <  1:356386/91‑1 (MQ=255)

                                                    aaaGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                       >  1:503046/1‑91 (MQ=255)

                                                     aaGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                      <  1:1794515/91‑1 (MQ=255)

                                                     aaGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                      <  1:1793891/91‑1 (MQ=255)

                                                      aGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcga                                     <  1:2061529‑M2/91‑55 (MQ=255)

                                                      aGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                     <  1:3219270/91‑1 (MQ=255)

                                                      aGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                     <  1:2957794/91‑1 (MQ=255)

                                                      aGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                     >  1:2794152/1‑91 (MQ=255)

                                                       ggCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                    <  1:3159657/91‑1 (MQ=255)

                                                       ggCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                    <  1:818551/91‑1 (MQ=255)

                                                          ataataACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatctctatatataaatttatggtaatactaattcgatgct                                 <  1:1876886‑M2/91‑59 (MQ=255)

                                                          ataataACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat                                 <  1:1799809/91‑1 (MQ=255)

                                                           taataaCCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                <  1:702698/91‑1 (MQ=255)

                                                             ataaCCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                              <  1:2347173/91‑1 (MQ=255)

                                                             ataaCCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                              <  1:3907289/91‑1 (MQ=255)

                                                                aCCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttcaagt                           <  1:2738081‑M2/91‑65 (MQ=255)

                                                                 ccATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAgg                          <  1:2596839/91‑1 (MQ=255)

                                                                  cagaGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                         <  1:1007612/88‑1 (MQ=255)

                                                                  cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                         >  1:502068/1‑91 (MQ=255)

                                                                  cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                         <  1:1015343/91‑1 (MQ=255)

                                                                    tAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgtg                       <  1:920522/91‑1 (MQ=255)

                                                                     aGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttcaagtatatt                      <  1:2344525‑M2/91‑70 (MQ=255)

                                                                        gCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTa                   >  1:3732527/1‑91 (MQ=255)

                                                                        gCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTa                   <  1:3926217/91‑1 (MQ=255)

                                                                         cGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAg                  >  1:3232762/1‑91 (MQ=255)

                                                                          gTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGa                 <  1:971401/91‑1 (MQ=255)

                                                                          gTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGa                 <  1:3763086/91‑1 (MQ=255)

                                                                          gTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGa                 <  1:2962350/91‑1 (MQ=255)

                                                                           tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                >  1:2779570/1‑91 (MQ=255)

                                                                           tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                >  1:1730444/1‑91 (MQ=255)

                                                                           tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                <  1:2649169/91‑1 (MQ=255)

                                                                            aTCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATa               >  1:82484/1‑91 (MQ=255)

                                                                               gAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGct            <  1:2087930/91‑1 (MQ=255)

                                                                               gAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGct            <  1:1737634/91‑1 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc           >  1:3326663/1‑91 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc           <  1:2742668/91‑1 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc           <  1:86427/91‑1 (MQ=255)

                                                                                aGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctc           <  1:4019176/91‑1 (MQ=255)

                                                                                 gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct          <  1:2365209/91‑1 (MQ=255)

                                                                                 gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct          <  1:1137688/91‑1 (MQ=255)

                                                                                  cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa         <  1:1734801/91‑1 (MQ=255)

                                                                                   gTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTAt        <  1:2134161/91‑1 (MQ=255)

                                                                                    tAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATg       <  1:621598/91‑1 (MQ=255)

                                                                                      aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc     >  1:533415/1‑91 (MQ=255)

                                                                                      aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc     <  1:832930/91‑1 (MQ=255)

                                                                                      aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc     <  1:3405121/91‑1 (MQ=255)

                                                                                        ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCtt   >  1:2442194/1‑91 (MQ=255)

                                                                                         gATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTc  <  1:1246797/91‑1 (MQ=255)

TACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTC  >  USA300TCH1516_ALE/1353842‑1354021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.