BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1355713 =	90 (0.920)	10 (0.120)	7/138	NT	11.7%	intergenic (+3/+51)	USA300HOU_RS06740/yclM	hypothetical protein/Aspartokinase 3
*	?	USA300TCH1516_ALE	1355761 =	74 (0.870)	10 (0.120)	7/138	NT	11.7%	intergenic (+51/+3)	USA300HOU_RS06740/yclM	hypothetical protein/Aspartokinase 3

Only 100 of 133 total aligned reads displayed.

CGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACA  >  USA300TCH1516_ALE/1355672‑1355851

cGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtat                                                                                           >  1:1213589/1‑91 (MQ=255)

cGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtat                                                                                           <  1:1279092/91‑1 (MQ=255)

 gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                                                                          <  1:952248/91‑1 (MQ=255)

 gTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTtata                                                                                          <  1:2113272/91‑1 (MQ=255)

  tATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTatat                                                                                         <  1:2624435/91‑1 (MQ=255)

   aTTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATAtt                                                                                        >  1:1101404/1‑91 (MQ=255)

   aTTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATAtt                                                                                        >  1:2944545/1‑91 (MQ=255)

    ttAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                                                                       >  1:1482481/1‑91 (MQ=255)

    ggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                                                                       >  1:2309281‑M1/38‑91 (MQ=255)

    ggttgcattaaaaaacttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTa                                                                                       >  1:2309395‑M1/38‑91 (MQ=255)

          aTGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGttttt                                                                                 <  1:4063850/91‑1 (MQ=255)

           tGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTa                                                                                >  1:1991745/1‑91 (MQ=255)

            gCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTAt                                                                               >  1:1340395/1‑91 (MQ=255)

            gCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTAt                                                                               >  1:1836778/1‑91 (MQ=255)

              aaTCCAGAGTACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATca                                                                             >  1:2093611/1‑91 (MQ=255)

              aaTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATca                                                                             <  1:309110/91‑1 (MQ=255)

               aTCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcac                                                                            <  1:2535969/91‑1 (MQ=255)

                  cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                                                                         <  1:1478530/91‑1 (MQ=255)

                  cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                                                                         <  1:2030962/91‑1 (MQ=255)

                  cAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATcacaca                                                                         <  1:2004751/91‑1 (MQ=255)

                   cttgtgtgataaaaactaatataaaagcaattcgtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACaa                                                                        >  1:3051646‑M2/71‑91 (MQ=255)

                   cttgtgtgataaaaactaatataaaagcaattcgtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACaa                                                                        >  1:3049036‑M2/71‑91 (MQ=255)

                   agagAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACaa                                                                        >  1:899838/1‑91 (MQ=255)

                    ttgtgtgataaaaactaatatAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAg                                                                       >  1:3051646‑M1/22‑91 (MQ=255)

                      gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                                                                     <  1:3076166/91‑1 (MQ=255)

                      gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                                                                     <  1:3371393/91‑1 (MQ=255)

                      gaACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtt                                                                     <  1:1030388/91‑1 (MQ=255)

                       aaCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGttt                                                                    >  1:2746143/1‑91 (MQ=255)

                        aCAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGtttt                                                                   <  1:67442/91‑1 (MQ=255)

                           ataaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTa                                                                <  1:1560571/91‑1 (MQ=255)

                           ataaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTa                                                                <  1:2689976/91‑1 (MQ=255)

                            taaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTaa                                                               >  1:1935107/1‑91 (MQ=255)

                            taaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTaa                                                               >  1:1557711/1‑91 (MQ=255)

                             aaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAAt                                                              >  1:2217408/1‑91 (MQ=255)

                             aaataaTTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAAt                                                              >  1:2217527/1‑91 (MQ=255)

                              aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                             <  1:348524/91‑1 (MQ=255)

                              aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                             <  1:2129672/91‑1 (MQ=255)

                              aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                             <  1:2979490/91‑1 (MQ=255)

                              aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                             <  1:2978630/91‑1 (MQ=255)

                              aataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATg                                                             <  1:2461257/91‑1 (MQ=255)

                               ataatTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGATTTTATCACACAAGTTTTTTAATGc                                                            >  1:3785903/1‑91 (MQ=255)

                                  atTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAc                                                         <  1:3673179/91‑1 (MQ=255)

                                   ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                                        <  1:2259451/91‑1 (MQ=255)

                                   ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                                        <  1:3155471/91‑1 (MQ=255)

                                   ttAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                                        <  1:3417258/91‑1 (MQ=255)

                                   taatataaaagcaattcgtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcc                                                        >  1:2309395‑M2/55‑91 (MQ=255)

                                     aaGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAAcccc                                                      <  1:104466/91‑1 (MQ=255)

                                     aaGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATACAAcccc                                                      >  1:2075746/1‑91 (MQ=255)

                                      aGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCg                                                     >  1:843435/1‑91 (MQ=255)

                                      aGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCg                                                     >  1:2332734/1‑91 (MQ=255)

                                      aGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCg                                                     >  1:2437285/1‑91 (MQ=255)

                                        taaaagcaattcgtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTg                                                   >  1:2258531‑M2/50‑91 (MQ=255)

                                        aaaaaGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTg                                                   <  1:2903084/91‑1 (MQ=255)

                                          AAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGAt                                                 >  1:2535208‑M1/1‑91 (MQ=255)

                                          AAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGAt                                                 >  1:2533954‑M1/1‑91 (MQ=255)

                                           AAGGAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATa                                                >  1:3729925‑M1/1‑91 (MQ=255)

                                           AAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATa                                                >  1:2810975‑M1/1‑91 (MQ=255)

                                            agcaattcgtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAg                                               >  1:2979484‑M2/46‑91 (MQ=255)

                                            AGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAg                                               >  1:896581‑M1/1‑91 (MQ=255)

                                            AGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAg                                               <  1:173520‑M1/91‑1 (MQ=255)

                                             GCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGc                                              >  1:123342‑M1/1‑91 (MQ=255)

                                             GCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGc                                              >  1:3335371‑M1/1‑91 (MQ=255)

                                             GCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGc                                              <  1:109988‑M1/91‑1 (MQ=255)

                                               AATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCaa                                            >  1:1024820‑M1/1‑91 (MQ=255)

                                                   cgtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACt                                        >  1:1795142‑M2/39‑91 (MQ=255)

                                                   CATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACt                                        >  1:415487‑M1/1‑91 (MQ=255)

                                                    gtaacacatgtattcaactgcgttatgaattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTc                                       >  1:1578713‑M2/38‑91 (MQ=255)

                                                     tAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCa                                      <  1:1158746/91‑1 (MQ=255)

                                                     tAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCa                                      <  1:703400/91‑1 (MQ=255)

                                                       aCGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCata                                    >  1:70754/1‑91 (MQ=255)

                                                         gCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATg                                  >  1:3723166/1‑91 (MQ=255)

                                                           aGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTa                                <  1:3141206/91‑1 (MQ=255)

                                                             ttGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGa                              >  1:3626202/1‑91 (MQ=255)

                                                             ttGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGa                              >  1:3626248/1‑91 (MQ=255)

                                                                aaTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataa                           >  1:2198966/1‑91 (MQ=255)

                                                                 aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat                          >  1:3993074/1‑91 (MQ=255)

                                                                 aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat                          >  1:1694897/1‑91 (MQ=255)

                                                                 aTACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataat                          <  1:3914586/91‑1 (MQ=255)

                                                                  tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata                         <  1:3795096/91‑1 (MQ=255)

                                                                  tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata                         <  1:3795235/91‑1 (MQ=255)

                                                                  tACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGataata                         <  1:3796005/91‑1 (MQ=255)

                                                                   aCATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATAc                        <  1:856401/91‑1 (MQ=255)

                                                                   aCATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATAc                        <  1:3217417/91‑1 (MQ=255)

                                                                    cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCTCGTGATAGCAAAACTCATATGTAGATAATACa                       >  1:3544647/1‑91 (MQ=255)

                                                                    cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACa                       <  1:1643617/91‑1 (MQ=255)

                                                                    cATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCACGTGATAGCAAAACTCATATGTAGATAATACa                       >  1:3544858/1‑91 (MQ=255)

                                                                     aTGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAg                      <  1:1688200/91‑1 (MQ=255)

                                                                     aTGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAg                      <  1:432925/91‑1 (MQ=255)

                                                                         gtTACGAAGTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCttt                  <  1:2697673/91‑1 (MQ=255)

                                                                            aCGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTc               >  1:1031524/1‑91 (MQ=255)

                                                                               aattgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGc            <  1:213572‑M2/81‑1 (MQ=255)

                                                                                 ttgcttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGcat          >  1:438459‑M2/9‑91 (MQ=255)

                                                                                     ttttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCatcatc      <  1:3529596‑M2/87‑1 (MQ=255)

                                                                                       ttATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTa    >  1:814174‑M2/3‑91 (MQ=255)

                                                                                        tATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTAc   <  1:1807758‑M2/90‑1 (MQ=255)

                                                                                         atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCcaca  >  1:3738038/1‑91 (MQ=255)

                                                                                         atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACa  >  1:1376532/1‑91 (MQ=255)

                                                                                         atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACa  >  1:1376276/1‑91 (MQ=255)

                                                                                         atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCGACa  >  1:3737928/1‑91 (MQ=255)

                                                                                         atatTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCGACa  >  1:3737595/1‑91 (MQ=255)

CGTATTAAGGATGCAATCCAGAGAACAATAAATAATTAAGAAAAAGCAATTCATAACGCAGTTGAATACATGTGTTACGAATTGCTTTTATATTAGTTTTTATCACACAAGTTTTTTAATGCAACCCCGTGATAGCAAAACTCATATGTAGATAATACAGCTTTTTCAGCATCATCTACA  >  USA300TCH1516_ALE/1355672‑1355851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.