New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 137184671 (0.720)7 (0.080) 5/142 NT 9.2% coding (1376/1989 nt) tkt Transketolase
?USA300TCH1516_ALE = 1371866 75 (0.860)coding (1396/1989 nt) tkt Transketolase

Only 100 of 104 total aligned reads displayed.

TTAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTA  >  USA300TCH1516_ALE/1371777‑1371956
                                                                                         |                                                                                          
ttAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGg                                                                                           <  1:714309‑M2/91‑2 (MQ=255)
ttAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGg                                                                                           >  1:1273701‑M2/1‑90 (MQ=255)
 tAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgt                                                                                          <  1:2668217‑M2/91‑3 (MQ=255)
  aGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtg                                                                                         <  1:3625485‑M2/91‑4 (MQ=255)
   gTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtga                                                                                        <  1:2475979‑M2/91‑5 (MQ=255)
   gTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtga                                                                                        <  1:945547‑M2/91‑5 (MQ=255)
      attattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaaga                                                                                     <  1:2415558‑M2/91‑8 (MQ=255)
       ttattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaagat                                                                                    <  1:502723‑M2/91‑9 (MQ=255)
       ttattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaagat                                                                                    <  1:502924‑M2/91‑9 (MQ=255)
       ttattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaagat                                                                                    <  1:1837571‑M2/91‑9 (MQ=255)
       ttattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaagat                                                                                    <  1:502937‑M2/91‑9 (MQ=255)
        tattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaagatg                                                                                   >  1:425770‑M2/1‑82 (MQ=255)
        tattTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGgtgaagatg                                                                                   <  1:2924314‑M2/91‑10 (MQ=255)
          tttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGt                                                                                 >  1:687412/1‑91 (MQ=255)
          tttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGt                                                                                 <  1:1215657/91‑1 (MQ=255)
           ttAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTc                                                                                >  1:2362117/1‑91 (MQ=255)
            tAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTcc                                                                               <  1:1488447/91‑1 (MQ=255)
             aaaaCCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCt                                                                              <  1:1232828/91‑1 (MQ=255)
              aaaCCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTa                                                                             <  1:2903638/91‑1 (MQ=255)
               aaCCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTAc                                                                            >  1:85206/1‑91 (MQ=255)
                 ccAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTc                                                                          <  1:3438534/91‑1 (MQ=255)
                   aGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCAt                                                                        <  1:2405229/91‑1 (MQ=255)
                   aGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCAt                                                                        <  1:2405485/91‑1 (MQ=255)
                   aGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCAt                                                                        <  1:1250807/91‑1 (MQ=255)
                   aGCGTTACGTTTAGCATCAATTATGGGATTAAATGCAACGTTCGTCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCAt                                                                        <  1:4147418/91‑1 (MQ=255)
                    gCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATg                                                                       >  1:608640/1‑91 (MQ=255)
                      gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                     >  1:2765075/1‑91 (MQ=255)
                      gTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGaa                                                                     <  1:2366060/91‑1 (MQ=255)
                       ttACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAAc                                                                    <  1:2675464/91‑1 (MQ=255)
                         aCGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCa                                                                  <  1:2436675/91‑1 (MQ=255)
                          cGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCaa                                                                 <  1:374768/91‑1 (MQ=255)
                          cGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCaa                                                                 >  1:2690489/1‑91 (MQ=255)
                          cGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCaa                                                                 >  1:343551/1‑91 (MQ=255)
                            tttATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAAtt                                                               >  1:776388/1‑91 (MQ=255)
                              tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                             >  1:3622729/1‑91 (MQ=255)
                              tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                             >  1:3622589/1‑91 (MQ=255)
                              tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                             >  1:3755267/1‑91 (MQ=255)
                              tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                             <  1:3049165/91‑1 (MQ=255)
                              tATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGa                                                             >  1:3622953/1‑91 (MQ=255)
                                tcatcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGc                                                           <  1:3012592/91‑1 (MQ=255)
                                  atcaATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCaa                                                         <  1:2621386/91‑1 (MQ=255)
                                    caATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAAtt                                                       <  1:1739685/91‑1 (MQ=255)
                                     aaTTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTa                                                      >  1:548766/1‑91 (MQ=255)
                                     aaTTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTa                                                      >  1:3544982/1‑91 (MQ=255)
                                     aaTTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTa                                                      >  1:814395/1‑91 (MQ=255)
                                      aTTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAg                                                     <  1:3950601/91‑1 (MQ=255)
                                       ttATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGc                                                    >  1:627709/1‑91 (MQ=255)
                                        tATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCt                                                   >  1:3113452/1‑91 (MQ=255)
                                         aTGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTg                                                  >  1:1163777/1‑91 (MQ=255)
                                         aTGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTg                                                  >  1:1163716/1‑91 (MQ=255)
                                          tGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTgg                                                 <  1:258593/91‑1 (MQ=255)
                                            ggATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGAt                                               >  1:1585270/1‑91 (MQ=255)
                                            ggATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCGAGTCATGAACCAATTGAGCAATTAGCTGGAt                                               >  1:3319969/1‑91 (MQ=255)
                                             gATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGAtt                                              <  1:3019873/91‑1 (MQ=255)
                                              aTTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTa                                             >  1:3314960/1‑91 (MQ=255)
                                               ttAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTaa                                            <  1:948020/91‑1 (MQ=255)
                                               ttAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTaa                                            <  1:948032/91‑1 (MQ=255)
                                                  aaTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAagag                                         <  1:1677311/91‑1 (MQ=255)
                                                   aTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGGACCAATTGAGCAATTAGCTGGATTAACAGc                                        >  1:3347288/1‑91 (MQ=255)
                                                   aTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGc                                        <  1:2818462/91‑1 (MQ=255)
                                                   aTGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGc                                        >  1:843702/1‑91 (MQ=255)
                                                      cAACGTTCATCTTCACACCTGATTCAATTGCAGTAGGCGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGAGTAAGAGCCAt                                     >  1:3507302/1‑91 (MQ=255)
                                                      cAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAt                                     <  1:2050110/91‑1 (MQ=255)
                                                      cAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAt                                     >  1:1816266/1‑91 (MQ=255)
                                                      cAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAt                                     <  1:1384779/91‑1 (MQ=255)
                                                      cAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAt                                     >  1:846434/1‑91 (MQ=255)
                                                       aaCGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCAtt                                    >  1:1933541/1‑91 (MQ=255)
                                                            tCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCaaa                               >  1:2307667/1‑91 (MQ=255)
                                                               tCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAatat                            <  1:2717436/91‑1 (MQ=255)
                                                                cTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATg                           >  1:2517523/1‑91 (MQ=255)
                                                                 ttCACACATGATTCAATTGCAGTAGgtgaagatgaacgttgcatttaatcccataattgatgataaacgtaacgctggttttaaataatca                          <  1:2045261‑M2/91‑67 (MQ=255)
                                                                   cacacaTGATTCAATTGCAGTAGgtgaagatgaacgttgcatttaatcccataattgatgataaacgtaacgctggttttaaataatcact                        <  1:2205839‑M2/91‑69 (MQ=255)
                                                                   cacacaTGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAAt                        <  1:2803509/91‑1 (MQ=255)
                                                                     cacaTGATTCAATTGCAGTAGgtgaagatgaacgttgcatttaatcccataattgatgataaacgtaacgctggttttaaataatcactaa                      <  1:2663838‑M2/91‑71 (MQ=255)
                                                                     cacaTGATTCAATTGCAGTAGgtgaagatgaacgttgcatttaatcccataattgatgataaacgtaacgctggttttaaataatcactaa                      <  1:1028793‑M2/91‑71 (MQ=255)
                                                                     cacaTGATTCAATTGCAGTAGgtgaagatgaacgttgcatttaatcccataattgatgataaacgtaacgctggttttaaataatcactaa                      <  1:1028163‑M2/91‑71 (MQ=255)
                                                                     cacaTGATTCAATTGCAGTAGGTGGAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGt                      >  1:500850/1‑91 (MQ=255)
                                                                       caTGATTCAATTGCAGTAGgtgaagatgaacgttgcaattaatcccataattgatgataaacgtaacgctggttttaaataatcactaaat                    <  1:3502833‑M2/91‑73 (MQ=255)
                                                                        aTGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAGTATGAATGTTAt                   <  1:3181165/91‑1 (MQ=255)
                                                                        aTGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTAt                   <  1:2292155/91‑1 (MQ=255)
                                                                        aTGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTAt                   <  1:1720712/91‑1 (MQ=255)
                                                                         tGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATc                  >  1:110553/1‑91 (MQ=255)
                                                                           aTTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCg                <  1:2824108/91‑1 (MQ=255)
                                                                           aTTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCg                <  1:2221729/91‑1 (MQ=255)
                                                                             tCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTACCCGTc              <  1:650351/91‑1 (MQ=255)
                                                                              cAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTcc             >  1:1399543/1‑91 (MQ=255)
                                                                               aaTTGCAGTAGgtgaagatgaacgttgcatttaatcccataattgatgataaacgtaacgctggttttaaataatcactaaatacgaagaa            <  1:1816511‑M2/91‑81 (MQ=255)
                                                                                aTTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctg           >  1:4042025/1‑91 (MQ=255)
                                                                                aTTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctg           >  1:3195263/1‑91 (MQ=255)
                                                                                 ttGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgc          <  1:216000/91‑1 (MQ=255)
                                                                                 ttGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgc          >  1:1195527/1‑91 (MQ=255)
                                                                                   gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgctg        >  1:599669/1‑91 (MQ=255)
                                                                                   gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgctg        >  1:599402/1‑91 (MQ=255)
                                                                                   gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgctg        <  1:1702440/91‑1 (MQ=255)
                                                                                   gCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCctgctg        >  1:599388/1‑91 (MQ=255)
                                                                                    cAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGa       >  1:1793071/1‑91 (MQ=255)
                                                                                      gTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATg     >  1:753072/1‑91 (MQ=255)
                                                                                        aGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGt   <  1:4105966/91‑1 (MQ=255)
                                                                                         ggTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTa  <  1:221859/91‑1 (MQ=255)
                                                                                         ggTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTa  <  1:3355828/91‑1 (MQ=255)
                                                                                         |                                                                                          
TTAGTGATTATTTAAAACCAGCGTTACGTTTATCATCAATTATGGGATTAAATGCAACGTTCATCTTCACACATGATTCAATTGCAGTAGGTGAAGATGGTCCTACTCATGAACCAATTGAGCAATTAGCTGGATTAAGAGCCATTCCAAATATGAATGTTATCCGTCCTGCTGATGGTA  >  USA300TCH1516_ALE/1371777‑1371956

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.