BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1502964 =	112 (1.140)	6 (0.070)	4/146	NT	5.7%	coding (849/1392 nt)	norB_4	Quinolone resistance protein NorB
*	?	USA300TCH1516_ALE	1503001 =	95 (1.060)	6 (0.070)	4/146	NT	5.7%	coding (812/1392 nt)	norB_4	Quinolone resistance protein NorB

Only 100 of 136 total aligned reads displayed.

GAAGAATATCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAGATCCAA  >  USA300TCH1516_ALE/1502911‑1503091

gctacaaatcctttaatcgattttaaattatttaaaaataaagcttacacaggTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCAc                                                                                            >  1:480679‑M1/54‑91 (MQ=255)

gaagaaTATCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCAc                                                                                            >  1:61861/1‑91 (MQ=255)

  agaaTATCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCt                                                                                          >  1:1200232/1‑91 (MQ=255)

     atatCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCtgtg                                                                                       >  1:750788/1‑91 (MQ=255)

     atatCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCtgtg                                                                                       >  1:1534534/1‑91 (MQ=255)

      tatCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTgtgt                                                                                      >  1:1415482/1‑91 (MQ=255)

         ccTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAg                                                                                   >  1:770601/1‑91 (MQ=255)

          cTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGc                                                                                  <  1:1741475/91‑1 (MQ=255)

          cTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGc                                                                                  <  1:2936010/91‑1 (MQ=255)

          cTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGc                                                                                  <  1:1563508/91‑1 (MQ=255)

          cTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGc                                                                                  <  1:214462/91‑1 (MQ=255)

           tAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCt                                                                                 <  1:105721/91‑1 (MQ=255)

           tAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCt                                                                                 <  1:362377/91‑1 (MQ=255)

           tAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCt                                                                                 <  1:362420/91‑1 (MQ=255)

           tAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCt                                                                                 <  1:4009253/91‑1 (MQ=255)

                ctctTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAtt                                                                            <  1:1742951/91‑1 (MQ=255)

                 tctTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAttt                                                                           <  1:561284/91‑1 (MQ=255)

                  ctTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAtttt                                                                          >  1:536831/1‑91 (MQ=255)

                  ctTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAtttt                                                                          <  1:3152264/91‑1 (MQ=255)

                  ctTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAtttt                                                                          <  1:1707268/91‑1 (MQ=255)

                  ctTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAtttt                                                                          <  1:3152263/91‑1 (MQ=255)

                   tttGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAttttt                                                                         >  1:2492150/1‑91 (MQ=255)

                   tttGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTAttttt                                                                         <  1:1064146/91‑1 (MQ=255)

                    ttGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTa                                                                        >  1:2354422/1‑91 (MQ=255)

                    ttGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAACTGTTGCACCTGTGTAAGCTTTATTTTTa                                                                        >  1:3331972/1‑91 (MQ=255)

                         cAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAaataa                                                                   >  1:1899150/1‑91 (MQ=255)

                         cAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAaataa                                                                   >  1:1899222/1‑91 (MQ=255)

                         cAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAaataa                                                                   <  1:2917786/91‑1 (MQ=255)

                         cAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAaataa                                                                   <  1:4007917/91‑1 (MQ=255)

                         cAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAaataa                                                                   <  1:4007884/91‑1 (MQ=255)

                          aaaTGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAaataat                                                                  <  1:3658187/91‑1 (MQ=255)

                           aaTGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAAtt                                                                 <  1:646909/91‑1 (MQ=255)

                            aTGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAAttt                                                                >  1:1377488/1‑91 (MQ=255)

                            aTGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAAttt                                                                <  1:431476/91‑1 (MQ=255)

                            aTGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAAttt                                                                <  1:3912706/91‑1 (MQ=255)

                            aTGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAAC‑AAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTa                                                               >  1:3200987/1‑91 (MQ=255)

                             tgtgTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTa                                                               <  1:489517/91‑1 (MQ=255)

                                gtTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTaaaa                                                            <  1:1493896/91‑1 (MQ=255)

                                   ggCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCg                                                         >  1:2473834/1‑91 (MQ=255)

                                   ggCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCg                                                         >  1:644958/1‑91 (MQ=255)

                                   ggCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCg                                                         >  1:3196263/1‑91 (MQ=255)

                                    gCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGa                                                        <  1:2296335/91‑1 (MQ=255)

                                       actaTTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTa                                                     >  1:1813921/1‑91 (MQ=255)

                                          aTTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAg                                                  >  1:2301898/1‑91 (MQ=255)

                                          aTTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAg                                                  >  1:440623/1‑91 (MQ=255)

                                          aTTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAg                                                  <  1:2064241/91‑1 (MQ=255)

                                            tAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGa                                                <  1:648270/91‑1 (MQ=255)

                                               tGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGAttt                                             >  1:1137833/1‑91 (MQ=255)

                                                gTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTg                                            >  1:2249563/1‑91 (MQ=255)

                                                 ttCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGt                                           >  1:811550/1‑91 (MQ=255)

                                                   ccTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAg                                         >  1:3832228/1‑91 (MQ=255)

                                                    gtgcaacagcttcaaactttttgttaaatggtgttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGc                                        >  1:480679‑M2/39‑91 (MQ=255)

                                                      GCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCAc                                      >  1:81912‑M1/1‑91 (MQ=255)

                                                       CAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACg                                     <  1:36271‑M1/91‑1 (MQ=255)

                                                        AACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGc                                    >  1:2364041‑M1/1‑91 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   >  1:1237736‑M1/1‑91 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   <  1:2271704‑M1/91‑1 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   <  1:2451348‑M1/91‑1 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   <  1:1261960‑M1/91‑1 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   >  1:1237858‑M1/1‑91 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   >  1:745472‑M1/1‑91 (MQ=255)

                                                         ACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCt                                   >  1:1237838‑M1/1‑91 (MQ=255)

                                                          CACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCtt                                  >  1:3490062‑M1/1‑91 (MQ=255)

                                                          CACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCtt                                  >  1:3490215‑M1/1‑91 (MQ=255)

                                                          CACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCtt                                  <  1:2416161‑M1/91‑1 (MQ=255)

                                                          CACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCATTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCtt                                  <  1:1759523‑M1/91‑1 (MQ=255)

                                                            gcttcaaactttttgttaaatggtgttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACACtttt                                >  1:2261084‑M2/31‑91 (MQ=255)

                                                            gcttcaaactttttgttaaatggtgttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACACtttt                                >  1:2261857‑M2/31‑91 (MQ=255)

                                                            ccATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCtttt                                <  1:2235543/91‑1 (MQ=255)

                                                            ccATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCtttt                                >  1:3724623/1‑91 (MQ=255)

                                                             cttcaaactttttgttaaatggtgttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTc                               >  1:160472‑M2/30‑91 (MQ=255)

                                                               tttAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCaa                             >  1:407484/1‑91 (MQ=255)

                                                               tcaaactttttgttaaatggtgttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCaa                             >  1:1391444‑M2/28‑91 (MQ=255)

                                                                    cAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACt                        <  1:3101479/91‑1 (MQ=255)

                                                                    cAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACt                        >  1:3269470/1‑91 (MQ=255)

                                                                     aaagaGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACta                       <  1:3216107/91‑1 (MQ=255)

                                                                     aaaaaGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACta                       <  1:2629298/91‑1 (MQ=255)

                                                                       aaaGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAATtata                     >  1:1471586/1‑91 (MQ=255)

                                                                       aaaGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACtata                     >  1:615531/1‑91 (MQ=255)

                                                                        aaGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataa                    >  1:2228596/1‑91 (MQ=255)

                                                                        aaGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataa                    >  1:264999/1‑91 (MQ=255)

                                                                         aGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaa                   <  1:2845117/91‑1 (MQ=255)

                                                                         aGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaa                   >  1:3300009/1‑91 (MQ=255)

                                                                         aGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaa                   <  1:54359/91‑1 (MQ=255)

                                                                          gTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCGAGAACTataaat                  >  1:39449/1‑91 (MQ=255)

                                                                           tttGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaata                 >  1:442808/1‑91 (MQ=255)

                                                                           tttGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaata                 <  1:1477098/91‑1 (MQ=255)

                                                                           tttGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaata                 >  1:1388301/1‑91 (MQ=255)

                                                                            ttGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaataa                >  1:3361975/1‑91 (MQ=255)

                                                                            ttGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTataaataa                >  1:3713895/1‑91 (MQ=255)

                                                                              gAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAAc              >  1:4125071/1‑91 (MQ=255)

                                                                              gAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAAc              <  1:369679/91‑1 (MQ=255)

                                                                               aaGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACt             >  1:2102172/1‑91 (MQ=255)

                                                                                    gttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAg        >  1:1182261‑M2/7‑91 (MQ=255)

                                                                                    gttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAg        <  1:1189140‑M2/85‑1 (MQ=255)

                                                                                    gttgcaCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCNTTTCAAGANCTATAAATAAACTAAAAg        <  1:3136823‑M2/85‑1 (MQ=255)

                                                                                        caCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAGATcc    <  1:1978145‑M2/89‑1 (MQ=255)

                                                                                         aCCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAGATCCa   <  1:4057628‑M2/90‑1 (MQ=255)

                                                                                          ccTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAGATCCaa  >  1:2986133/1‑91 (MQ=255)

                                                                                          ccTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAGATCCaa  >  1:3812670/1‑91 (MQ=255)

GAAGAATATCCTAAACCTCTTTGAACAAATGTGTTGGCTACTATTAATGTTCCTGCAACACCATTTAACAAAAAGTTTGAAGCTGTTGCACCTGTGTAAGCTTTATTTTTAAATAATTTAAAATCGATTAAAGGATTTGTAGCACGCTTTTCAAGAACTATAAATAAACTAAAAGATCCAA  >  USA300TCH1516_ALE/1502911‑1503091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.