BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1507967 =	79 (0.800)	9 (0.110)	8/128	NT	11.6%	intergenic (‑392/+83)	ald1/ypcP	Alanine dehydrogenase 1/5'‑3' exonuclease
*	?	USA300TCH1516_ALE	1508010 =	74 (0.940)	9 (0.110)	8/128	NT	11.6%	intergenic (‑435/+40)	ald1/ypcP	Alanine dehydrogenase 1/5'‑3' exonuclease

Only 100 of 159 total aligned reads displayed.

CTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGTT  >  USA300TCH1516_ALE/1507920‑1508100

ctatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTta                                                                                            <  1:391938/91‑1 (MQ=255)

ctatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTta                                                                                            <  1:392079/91‑1 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:817933/91‑1 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:2549491/91‑1 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:2549418/91‑1 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:2107154/91‑1 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:2107005/91‑1 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           >  1:3798176/1‑91 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           >  1:3798323/1‑91 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           >  1:3798523/1‑91 (MQ=255)

 tatcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtat                                                                                           <  1:448004/91‑1 (MQ=255)

  atcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtata                                                                                          >  1:234690/1‑91 (MQ=255)

  atcAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTtata                                                                                          <  1:3802319/91‑1 (MQ=255)

     aaaaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACtt                                                                                       <  1:433425/91‑1 (MQ=255)

       aaTTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTaa                                                                                     >  1:3093731/1‑91 (MQ=255)

           cGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTgg                                                                                 >  1:2437185/1‑91 (MQ=255)

           cGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTgg                                                                                 <  1:535151/91‑1 (MQ=255)

            ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                >  1:1623979/1‑91 (MQ=255)

            ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                <  1:3279150/91‑1 (MQ=255)

            ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                >  1:1201541/1‑91 (MQ=255)

            ggCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGt                                                                                >  1:2813662/1‑91 (MQ=255)

               ttatttatTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACGTAATTGGTTTa                                                                             >  1:3760217/1‑91 (MQ=255)

                  tttattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAtt                                                                          <  1:3952915/91‑1 (MQ=255)

                    tattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAtttt                                                                        <  1:548814/91‑1 (MQ=255)

                    tattCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAAtttt                                                                        <  1:2235502/91‑1 (MQ=255)

                      ttCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTc                                                                      >  1:2862929/1‑91 (MQ=255)

                       tCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                     <  1:1641489/91‑1 (MQ=255)

                       tCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                     >  1:709515/1‑91 (MQ=255)

                       tCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCa                                                                     <  1:3438867/91‑1 (MQ=255)

                        gaaaaattaaaccaattaagtatAAAAAGACTATTTCTACCTTGTATCGCTAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCAt                                                                    >  1:3595515‑M1/24‑91 (MQ=255)

                        cACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCAt                                                                    >  1:3572538/1‑91 (MQ=255)

                          ctctGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATaa                                                                  <  1:2464533/91‑1 (MQ=255)

                              gACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATc                                                              <  1:2116813/91‑1 (MQ=255)

                               aCATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCt                                                             <  1:2787729/91‑1 (MQ=255)

                               aCATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCt                                                             <  1:570174/91‑1 (MQ=255)

                                    tCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATAc                                                        <  1:768352/91‑1 (MQ=255)

                                      cAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtt                                                      >  1:2382002/1‑91 (MQ=255)

                                      cAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtt                                                      >  1:2188958/1‑91 (MQ=255)

                                      cAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtt                                                      >  1:4104630/1‑91 (MQ=255)

                                      cAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtt                                                      >  1:1513081/1‑91 (MQ=255)

                                      cAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtt                                                      >  1:1512576/1‑91 (MQ=255)

                                       aaaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACttt                                                     >  1:2242292/1‑91 (MQ=255)

                                       aaaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACttt                                                     <  1:3099353/91‑1 (MQ=255)

                                        aaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtttt                                                    >  1:2263073/1‑91 (MQ=255)

                                        aaTACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACtttt                                                    >  1:2497771/1‑91 (MQ=255)

                                          tACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTa                                                  >  1:562605/1‑91 (MQ=255)

                                          tACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTa                                                  >  1:2604957/1‑91 (MQ=255)

                                          tACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTa                                                  >  1:1477269/1‑91 (MQ=255)

                                            cGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTaaa                                                >  1:1095863/1‑91 (MQ=255)

                                              cAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTATTTaaaaa                                              >  1:73338/1‑91 (MQ=255)

                                               aaaaagactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAAt                                             >  1:3445913‑M2/44‑91 (MQ=255)

                                               AAATAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAAt                                             >  1:3337897‑M1/1‑91 (MQ=255)

                                                aaaagactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATg                                            >  1:2527732‑M2/43‑91 (MQ=255)

                                                AAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATg                                            <  1:1325950‑M1/91‑1 (MQ=255)

                                                AAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATg                                            <  1:2929347‑M1/91‑1 (MQ=255)

                                                   agactatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGa                                         >  1:1199386‑M2/40‑91 (MQ=255)

                                                     actatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATg                                       >  1:2896712‑M2/38‑91 (MQ=255)

                                                      ctatttctatcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGa                                      >  1:2645486‑M2/37‑91 (MQ=255)

                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    >  1:2554009‑M1/1‑91 (MQ=255)

                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    <  1:2475105‑M1/91‑1 (MQ=255)

                                                        ATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGaaa                                    >  1:3245205‑M1/1‑91 (MQ=255)

                                                         TTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAat                                   >  1:3086625‑M1/1‑91 (MQ=255)

                                                         TTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAat                                   <  1:2809634‑M1/91‑1 (MQ=255)

                                                           TCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAatat                                 >  1:147079‑M1/1‑91 (MQ=255)

                                                           TCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAatat                                 >  1:3589395‑M1/1‑91 (MQ=255)

                                                              atcgatacaaggtagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAtt                              >  1:3488713‑M2/29‑91 (MQ=255)

                                                              ACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAtt                              >  1:1187454‑M1/1‑91 (MQ=255)

                                                              ACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAtt                              >  1:1917918‑M1/1‑91 (MQ=255)

                                                              ACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAtt                              >  1:1918174‑M1/1‑91 (MQ=255)

                                                                cTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAtttt                            <  1:2699262/91‑1 (MQ=255)

                                                                cTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATAtttt                            >  1:1008949/1‑91 (MQ=255)

                                                                 ttGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTc                           <  1:1252403/91‑1 (MQ=255)

                                                                 ttGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTc                           <  1:197792/91‑1 (MQ=255)

                                                                  tGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTcc                          <  1:1486617/91‑1 (MQ=255)

                                                                   gTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCt                         >  1:4068882/1‑91 (MQ=255)

                                                                   gTATCGATAGAAATAGTCTTTTTATACGTAATTGGTTTAATTTTTCATAAAATCTTATTCTTTTTAAAAGTGGGATGAAATATATTTTCCt                         <  1:1190513/91‑1 (MQ=255)

                                                                      tCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGaa                      >  1:205510/1‑91 (MQ=255)

                                                                      tCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGaa                      >  1:3105958/1‑91 (MQ=255)

                                                                        gATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAAc                    >  1:2720869/1‑91 (MQ=255)

                                                                         aTAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACa                   <  1:89061/91‑1 (MQ=255)

                                                                          tagaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACAt                  >  1:2466646‑M2/17‑91 (MQ=255)

                                                                            gaaatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGt                <  1:482018‑M2/77‑1 (MQ=255)

                                                                              aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              <  1:2653938‑M2/79‑1 (MQ=255)

                                                                              aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              >  1:3117325‑M2/13‑91 (MQ=255)

                                                                              aatagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTaa              <  1:2453562‑M2/79‑1 (MQ=255)

                                                                               atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             <  1:840112‑M2/80‑1 (MQ=255)

                                                                               atagtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAAt             <  1:3567780‑M2/80‑1 (MQ=255)

                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          >  1:1796088‑M2/9‑91 (MQ=255)

                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          >  1:2567239‑M2/9‑91 (MQ=255)

                                                                                  gtctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCa          <  1:4015369‑M2/83‑1 (MQ=255)

                                                                                   tctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCAt         >  1:3926988‑M2/8‑91 (MQ=255)

                                                                                    ctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATg        >  1:1701159‑M2/7‑91 (MQ=255)

                                                                                    ctttttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATg        <  1:2302957‑M2/85‑1 (MQ=255)

                                                                                       tttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTc     >  1:4113869‑M2/4‑91 (MQ=255)

                                                                                       tttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTc     >  1:3073303‑M2/4‑91 (MQ=255)

                                                                                        ttATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCg    <  1:3679729‑M2/89‑1 (MQ=255)

                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATTCTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  1:1979552‑M2/90‑1 (MQ=255)

                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  1:1232965‑M2/90‑1 (MQ=255)

                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  1:1849970‑M2/90‑1 (MQ=255)

                                                                                         tATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGt   <  1:4064938‑M2/90‑1 (MQ=255)

CTATCAAAATTCGGCTTATTTATTCACTCTGACATATCCAAATACGCAAAAAGACTATTTCTACCTTGTATCGATAGAAATAGTCTTTTTATACTTAATTGGTTTAATTTTTCATAAAATCTTATACTTTTTAAAAATGGGATGAAATATATTTTCCTGAAACATGTAATTCATGTTCGTT  >  USA300TCH1516_ALE/1507920‑1508100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.