BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1555332 =	91 (0.930)	7 (0.080)	5/140	NT	8.6%	intergenic (+28/+78)	USA300HOU_RS07605/ribU	Ferredoxin/Riboflavin transporter RibU
*	?	USA300TCH1516_ALE	1555376 =	70 (0.810)	7 (0.080)	5/140	NT	8.6%	intergenic (+72/+34)	USA300HOU_RS07605/ribU	Ferredoxin/Riboflavin transporter RibU

Only 100 of 122 total aligned reads displayed.

CGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGA  >  USA300TCH1516_ALE/1555286‑1555466

cGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTtta                                                                                            <  1:1830190/91‑1 (MQ=255)

cGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTtta                                                                                            >  1:534882/1‑91 (MQ=255)

 gCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttat                                                                                           <  1:1870375/91‑1 (MQ=255)

  cTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                                          <  1:2109033/91‑1 (MQ=255)

  cTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                                          >  1:1961479/1‑91 (MQ=255)

  cTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttatt                                                                                          >  1:2914415/1‑91 (MQ=255)

      aaaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttattatta                                                                                      >  1:1206092/1‑91 (MQ=255)

      aaaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTttattatta                                                                                      >  1:1504012/1‑91 (MQ=255)

       aaaTTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTtattattat                                                                                     >  1:306629/1‑91 (MQ=255)

          tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTAtgtg                                                                                  <  1:1876375/91‑1 (MQ=255)

          tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTAtgtg                                                                                  <  1:25032/91‑1 (MQ=255)

          tttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTAtgtg                                                                                  <  1:1876271/91‑1 (MQ=255)

          tttGAATAATTGATTTTCTAGACAAATGTGCTATAGAAAAAGCAGGCAAGCTATCGTTTATTCATAGTCACCTGCTTTTTATTATTAtgtg                                                                                  <  1:24865/91‑1 (MQ=255)

           ttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATgtgt                                                                                 >  1:2432479/1‑91 (MQ=255)

           ttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATgtgt                                                                                 >  1:794474/1‑91 (MQ=255)

           ttGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATgtgt                                                                                 >  1:2431954/1‑91 (MQ=255)

             gAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGtat                                                                               >  1:2659861/1‑91 (MQ=255)

              aataatTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGtata                                                                              >  1:160866/1‑91 (MQ=255)

                  atTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTAGTATTATGTGTAtattat                                                                          >  1:3556068/1‑91 (MQ=255)

                       ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                                     >  1:3034925/1‑91 (MQ=255)

                       ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                                     <  1:2237731/91‑1 (MQ=255)

                       ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                                     <  1:1763231/91‑1 (MQ=255)

                       ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                                     >  1:3034809/1‑91 (MQ=255)

                       ttttttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGc                                                                     <  1:2585278/91‑1 (MQ=255)

                          tttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCttt                                                                  <  1:414886/91‑1 (MQ=255)

                           ttAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTa                                                                 <  1:2659527/91‑1 (MQ=255)

                            tAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTaa                                                                >  1:795905/1‑91 (MQ=255)

                             aGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                               >  1:292319/1‑91 (MQ=255)

                             aGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                               >  1:292337/1‑91 (MQ=255)

                             aGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAAt                                                               <  1:1751769/91‑1 (MQ=255)

                                cAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTg                                                            >  1:1175965/1‑91 (MQ=255)

                                 aaaTGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGa                                                           >  1:2631366/1‑91 (MQ=255)

                                     gTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                                       <  1:370975/91‑1 (MQ=255)

                                     gTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                                       <  1:2742475/91‑1 (MQ=255)

                                     gTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaa                                                       <  1:1207473/91‑1 (MQ=255)

                                      ttCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTaaa                                                      >  1:2562068/1‑91 (MQ=255)

                                        cTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAAtt                                                    >  1:3076835/1‑91 (MQ=255)

                                        cTAGAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAAtt                                                    <  1:3734281/91‑1 (MQ=255)

                                          ataGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCt                                                  >  1:427141/1‑91 (MQ=255)

                                           taGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCtt                                                 <  1:3622188/91‑1 (MQ=255)

                                            aGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCttt                                                <  1:2682563/91‑1 (MQ=255)

                                            aGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCttt                                                <  1:343721/91‑1 (MQ=255)

                                              AAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTc                                              <  1:544953‑M1/91‑1 (MQ=255)

                                              AAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTc                                              <  1:544963‑M1/91‑1 (MQ=255)

                                               aaaagcaggtgactatcaataaacgatagcttgcctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                             >  1:2778334‑M2/44‑91 (MQ=255)

                                               AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                             <  1:3748534‑M1/91‑1 (MQ=255)

                                               AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                             >  1:1379751‑M1/1‑91 (MQ=255)

                                               AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                             >  1:1379839‑M1/1‑91 (MQ=255)

                                               AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                             >  1:3219011‑M1/1‑91 (MQ=255)

                                               AAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCa                                             >  1:1910998‑M1/1‑91 (MQ=255)

                                                 AAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAg                                           <  1:2695986‑M1/91‑1 (MQ=255)

                                                 AAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAg                                           <  1:2695987‑M1/91‑1 (MQ=255)

                                                  agcaggtgactatcaataaacgatagcttgcctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGa                                          >  1:3029296‑M2/41‑91 (MQ=255)

                                                   GCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGaa                                         <  1:2910714‑M1/91‑1 (MQ=255)

                                                     AGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAAt                                       <  1:1127076‑M1/91‑1 (MQ=255)

                                                      GGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAAtt                                      >  1:2242113‑M1/1‑91 (MQ=255)

                                                       GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                                     >  1:397492‑M1/1‑91 (MQ=255)

                                                       GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                                     <  1:3407834‑M1/91‑1 (MQ=255)

                                                       GCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTc                                     >  1:3453875‑M1/1‑91 (MQ=255)

                                                        tgactatcaataaacgatagcttgcctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCg                                    >  1:1078483‑M2/35‑91 (MQ=255)

                                                        tgactatcaataaacgatagcttgcctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCg                                    >  1:1078326‑M2/35‑91 (MQ=255)

                                                        tgactatcaataaacgatagcttgcctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCg                                    >  1:1078625‑M2/35‑91 (MQ=255)

                                                         gactatcaataaacgatagcttgcctgctttttATTATTATGTGTATATTATTTTGATTTAATTTGATTCACTTCTTTTCAAGAAATTCGc                                   >  1:2697453‑M2/34‑91 (MQ=255)

                                                         aaGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGc                                   <  1:3194407/91‑1 (MQ=255)

                                                          aGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCa                                  >  1:310029/1‑91 (MQ=255)

                                                          aGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCa                                  >  1:310057/1‑91 (MQ=255)

                                                           gCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCaa                                 <  1:3291767/91‑1 (MQ=255)

                                                            cTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAg                                <  1:629565/91‑1 (MQ=255)

                                                               tCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCTCAAGCCt                             <  1:1530483/91‑1 (MQ=255)

                                                               tCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCt                             >  1:269274/1‑91 (MQ=255)

                                                                cGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCtt                            >  1:311084/1‑91 (MQ=255)

                                                                 gTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCACGCCTTc                           <  1:3225190/91‑1 (MQ=255)

                                                                 gTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTc                           >  1:2475473/1‑91 (MQ=255)

                                                                  tttATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCt                          <  1:542052/91‑1 (MQ=255)

                                                                     aTTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtata                       <  1:3569907/91‑1 (MQ=255)

                                                                     aTTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtata                       >  1:36832/1‑91 (MQ=255)

                                                                      ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat                      >  1:1122647/1‑91 (MQ=255)

                                                                      ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat                      >  1:1123059/1‑91 (MQ=255)

                                                                      ttGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatat                      <  1:2419655/91‑1 (MQ=255)

                                                                       tGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCtatata                     <  1:883054/91‑1 (MQ=255)

                                                                        gATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAg                    >  1:1261905/1‑91 (MQ=255)

                                                                        gATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAg                    >  1:2086901/1‑91 (MQ=255)

                                                                        gATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAg                    <  1:313745/91‑1 (MQ=255)

                                                                         aTAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGt                   <  1:3717930/91‑1 (MQ=255)

                                                                           aGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTaa                 >  1:1453556/1‑91 (MQ=255)

                                                                           aGTCACCTGCTTTTTATTATTATGTGTATATTATTTTACTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTaa                 >  1:2334884/1‑91 (MQ=255)

                                                                              cACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaat              >  1:2087299/1‑91 (MQ=255)

                                                                              cACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaat              >  1:322375/1‑91 (MQ=255)

                                                                                cctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaataa            <  1:3536098‑M2/81‑1 (MQ=255)

                                                                                cctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaataa            >  1:726523‑M2/11‑91 (MQ=255)

                                                                                 ctgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaataaa           >  1:1426106‑M2/10‑91 (MQ=255)

                                                                                  tgctttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAaaataaat          >  1:343649‑M2/9‑91 (MQ=255)

                                                                                     tttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACa       >  1:222507‑M2/6‑91 (MQ=255)

                                                                                      ttttATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACaa      >  1:2203615‑M2/5‑91 (MQ=255)

                                                                                         tATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAg   <  1:223820‑M2/90‑1 (MQ=255)

                                                                                         tATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAg   >  1:1491820‑M2/2‑91 (MQ=255)

                                                                                         tATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAg   <  1:1459667‑M2/90‑1 (MQ=255)

                                                                                         tATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAg   >  1:353523‑M2/2‑91 (MQ=255)

                                                                                          attattatGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGa  >  1:2031001/1‑91 (MQ=255)

                                                                                          attattatGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGa  >  1:2456951/1‑91 (MQ=255)

CGCTTTAAAATTTGAATAATTGATTTTTTAGACAAATGTTCTATAGAAAAAGCAGGCAAGCTATCGTTTATTGATAGTCACCTGCTTTTTATTATTATGTGTATATTATTTTGCTTTAATTTGATTAAATTCTTTTCAAGAAATTCGCAAGCCTTCTATATAGTAAAATAAATACAATAGA  >  USA300TCH1516_ALE/1555286‑1555466

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.