BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1562383	118 (1.200)	13 (0.140)	9/148	NT	10.4%	intergenic (‑349/+41)	hlgC_1/lytN_2	Gamma‑hemolysin component C/putative cell wall hydrolase LytN
*	?	USA300TCH1516_ALE	= 1562397	115 (1.260)	13 (0.140)	9/148	NT	10.4%	intergenic (‑363/+27)	hlgC_1/lytN_2	Gamma‑hemolysin component C/putative cell wall hydrolase LytN

Only 100 of 154 total aligned reads displayed.

ACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTC  >  USA300TCH1516_ALE/1562307‑1562487

aCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                            <  1:1541212/91‑1 (MQ=255)

aCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                            <  1:1541326/91‑1 (MQ=255)

aCTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTAcc                                                                                            <  1:2540576/91‑1 (MQ=255)

 cTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCt                                                                                           >  1:4142513‑M2/1‑90 (MQ=255)

   aaaaaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgc                                                                                         >  1:3690798‑M2/1‑88 (MQ=255)

     aaaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgcct                                                                                       >  1:3515400‑M2/1‑86 (MQ=255)

     aaaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgcct                                                                                       >  1:3663479‑M2/1‑86 (MQ=255)

     aaaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgcct                                                                                       >  1:203718‑M2/1‑86 (MQ=255)

     aaaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgcct                                                                                       >  1:1872715‑M2/1‑86 (MQ=255)

     aaaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgcct                                                                                       >  1:470190‑M2/1‑86 (MQ=255)

      aaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgccta                                                                                      >  1:2852482‑M2/1‑85 (MQ=255)

      aaCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCtgccta                                                                                      >  1:1963270‑M2/1‑85 (MQ=255)

       aCGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTaa                                                                                     >  1:3839136/1‑91 (MQ=255)

        cGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAg                                                                                    <  1:1007022/91‑1 (MQ=255)

         gtttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGa                                                                                   <  1:1650614/91‑1 (MQ=255)

         gtttgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGa                                                                                   >  1:441587/1‑91 (MQ=255)

            tgtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATtc                                                                                <  1:3505784/91‑1 (MQ=255)

             gtttTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATtca                                                                               >  1:2154776/1‑91 (MQ=255)

              tttttttAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAGGTACTTCGGTACTtgcctattatttaa                                                                              >  1:592466‑M2/1‑77 (MQ=255)

               ttttttAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAGGTACTTCGGTACTtgcctattatttaaa                                                                             >  1:985742‑M2/1‑76 (MQ=255)

                tttttAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATtcatca                                                                            <  1:2821134/91‑1 (MQ=255)

                  tttAAAATTTAATATATTCATGTAATAATTAACTGTTTATTAATTTTAAATAATAGGCAGGTACTTCGGTACTtgcctattatttaaaatt                                                                          >  1:3876913‑M2/1‑73 (MQ=255)

                    tAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCAtata                                                                        <  1:1719004/91‑1 (MQ=255)

                    tAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCAtata                                                                        <  1:45153/91‑1 (MQ=255)

                    tAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCAtata                                                                        >  1:1448069/1‑91 (MQ=255)

                     aaaaTTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATAc                                                                       >  1:1827961/1‑91 (MQ=255)

                      aaaTTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACa                                                                      <  1:25332/91‑1 (MQ=255)

                      aaaTTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACa                                                                      <  1:3459109/91‑1 (MQ=255)

                       aaTTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACaa                                                                     >  1:3354280/1‑91 (MQ=255)

                       aaTTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACaa                                                                     <  1:3791506/91‑1 (MQ=255)

                       aaTTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACaa                                                                     >  1:652711/1‑91 (MQ=255)

                         tttAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAAtt                                                                   <  1:3555920/91‑1 (MQ=255)

                          ttAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTa                                                                  <  1:33437/91‑1 (MQ=255)

                          ttAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTa                                                                  <  1:3247257/91‑1 (MQ=255)

                           tAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTAt                                                                 <  1:2301540/91‑1 (MQ=255)

                            aaTATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATc                                                                >  1:687693/1‑91 (MQ=255)

                             atatatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTCTCa                                                               >  1:3732356/1‑91 (MQ=255)

                             atatatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCa                                                               >  1:2535915/1‑91 (MQ=255)

                              tatatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCaa                                                              >  1:855750/1‑91 (MQ=255)

                              tatatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGCACCTGCCTAAGATTCATCATATACAATTATCaa                                                              >  1:3400641/1‑91 (MQ=255)

                               atatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCaaa                                                             >  1:1376105/1‑91 (MQ=255)

                               atatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCaaa                                                             >  1:2926084/1‑91 (MQ=255)

                                tatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAAc                                                            <  1:1776005/91‑1 (MQ=255)

                                tatTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAAc                                                            <  1:1096661/91‑1 (MQ=255)

                                     aTGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCAc                                                       <  1:3394784/91‑1 (MQ=255)

                                      tGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACt                                                      >  1:2626539/1‑91 (MQ=255)

                                       gTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTa                                                     >  1:789696/1‑91 (MQ=255)

                                        tAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTaa                                                    <  1:2155209/91‑1 (MQ=255)

                                        tAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTaa                                                    <  1:2154829/91‑1 (MQ=255)

                                        tAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTaa                                                    <  1:1209707/91‑1 (MQ=255)

                                        tAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTaa                                                    <  1:513593/91‑1 (MQ=255)

                                         aaaaaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTaaa                                                   <  1:1115454/91‑1 (MQ=255)

                                          aaaaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAAc                                                  >  1:2993436/1‑91 (MQ=255)

                                          aaaaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAAc                                                  >  1:952262/1‑91 (MQ=255)

                                           aaaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACt                                                 >  1:1389506/1‑91 (MQ=255)

                                            aaTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACtt                                                <  1:3619481/91‑1 (MQ=255)

                                             aTTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTa                                               <  1:3932688/91‑1 (MQ=255)

                                              ttAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTAc                                              >  1:1322010/1‑91 (MQ=255)

                                              ttAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCAATAAACTTAc                                              >  1:3722500/1‑91 (MQ=255)

                                               tAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTAcc                                             >  1:284902/1‑91 (MQ=255)

                                                aaCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCa                                            >  1:2949262/1‑91 (MQ=255)

                                                 aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCaa                                           >  1:2389602/1‑91 (MQ=255)

                                                 aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCaa                                           >  1:2350265/1‑91 (MQ=255)

                                                 aCTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCaa                                           >  1:1938166/1‑91 (MQ=255)

                                                   tGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCaaaa                                         >  1:3321339/1‑91 (MQ=255)

                                                   tGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCaaaa                                         <  1:641447/91‑1 (MQ=255)

                                                   tGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCaaaa                                         <  1:1533627/91‑1 (MQ=255)

                                                      ttattaATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTg                                      <  1:2742677/91‑1 (MQ=255)

                                                        attaATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCt                                    <  1:1823993/91‑1 (MQ=255)

                                                          taATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa                                  <  1:767051/91‑1 (MQ=255)

                                                           aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAt                                 <  1:3151827/91‑1 (MQ=255)

                                                           aaTTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAt                                 >  1:3122629/1‑91 (MQ=255)

                                                             ttttAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTc                               <  1:820801/91‑1 (MQ=255)

                                                              tttAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCg                              >  1:1303707/1‑91 (MQ=255)

                                                               ttAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCgg                             <  1:2090236/91‑1 (MQ=255)

                                                                tAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGt                            <  1:102236/91‑1 (MQ=255)

                                                                       taGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGc                     <  1:2127581/91‑1 (MQ=255)

                                                                       taGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGc                     >  1:1256546/1‑91 (MQ=255)

                                                                       taGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGc                     <  1:2433846/91‑1 (MQ=255)

                                                                       taGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGc                     <  1:1839513/91‑1 (MQ=255)

                                                                        aGGCAAGTACCGAAGTACCtgcctattatttaaaattaataaacagttaatttttacatgaatatattaaattttaaaaaaacaaacgttt                    <  1:2255052‑M2/91‑73 (MQ=255)

                                                                          gCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTAt                  <  1:1512118/91‑1 (MQ=255)

                                                                            aaGTACCGAAGTACCtgcctattatttaaaattaataaacagttaatttttacatgaatatattaaattttaaaaaaacaaacgtttttag                <  1:1212887‑M2/91‑77 (MQ=255)

                                                                            aaGTACCGAAGTACCtgcctattatttaaaattaataaacagttaatttttacatgaatatattaaattttaaaaaaacaaacgtttttag                <  1:2554903‑M2/91‑77 (MQ=255)

                                                                            aaGTACCGAAGTACCtgcctattatttaaaattaataaacagttaatttttacatgaatatattaaattttaaaaaaacaaacgtttttag                <  1:1213652‑M2/91‑77 (MQ=255)

                                                                             aGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTc               <  1:412168/91‑1 (MQ=255)

                                                                             aGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTc               <  1:647736/91‑1 (MQ=255)

                                                                              gTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCt              <  1:3657041/91‑1 (MQ=255)

                                                                                aCCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTAc            <  1:2292427/91‑1 (MQ=255)

                                                                                 ccGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTAcc           <  1:1288033/91‑1 (MQ=255)

                                                                                  cGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACct          <  1:1619443/91‑1 (MQ=255)

                                                                                   tcggTACTTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACctc         >  1:2925466/4‑91 (MQ=255)

                                                                                   gAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACctc         >  1:3873774/1‑91 (MQ=255)

                                                                                    aaGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACctct        <  1:2548546/91‑1 (MQ=255)

                                                                                    aaGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACctct        <  1:2549214/91‑1 (MQ=255)

                                                                                    aaGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACctct        >  1:4061063/1‑91 (MQ=255)

                                                                                    aaGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACctct        <  1:425182/91‑1 (MQ=255)

                                                                                       tACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCg     <  1:3940549/91‑1 (MQ=255)

                                                                                         ccTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGt   <  1:1201051/91‑1 (MQ=255)

                                                                                          cTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTc  <  1:4078588/91‑1 (MQ=255)

ACTAAAAACGTTTGTTTTTTTAAAATTTAATATATTCATGTAAAAATTAACTGTTTATTAATTTTAAATAATAGGCAAGTACCGAAGTACCTGCCTAAGATTCATCATATACAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCGGTTGCCTGCTATGTCTACCTCTCCGGTC  >  USA300TCH1516_ALE/1562307‑1562487

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.