BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1660020 =	99 (1.010)	18 (0.210)	7/138	NT	17.0%	coding (1289/1464 nt)	gluP	Rhomboid protease GluP
*	?	USA300TCH1516_ALE	1660066 =	90 (1.060)	18 (0.210)	7/138	NT	17.0%	coding (1243/1464 nt)	gluP	Rhomboid protease GluP

Only 100 of 146 total aligned reads displayed.

TTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATT  >  USA300TCH1516_ALE/1659976‑1660156

ttGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAAtt                                                                                            <  1:372799/91‑1 (MQ=255)

 tGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTg                                                                                           >  1:2279918/1‑91 (MQ=255)

   cTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAt                                                                                         >  1:3903302/1‑91 (MQ=255)

    tATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAta                                                                                        >  1:3363668/1‑91 (MQ=255)

       cGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                     <  1:1535482/91‑1 (MQ=255)

       cGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagta                                                                                     >  1:3476193/1‑91 (MQ=255)

        gCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGAtagtag                                                                                    <  1:1615883/91‑1 (MQ=255)

         cTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGc                                                                                   <  1:1173234/91‑1 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 <  1:1020982/91‑1 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 >  1:1500349/1‑91 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 <  1:4122393/91‑1 (MQ=255)

           aaCTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCa                                                                                 >  1:757397/1‑91 (MQ=255)

              tCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATaa                                                                              >  1:333573/1‑91 (MQ=255)

               cAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAAt                                                                             >  1:1611557/1‑91 (MQ=255)

                aaaaTTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATc                                                                            <  1:599247/91‑1 (MQ=255)

                aaaaTTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATc                                                                            <  1:2135953/91‑1 (MQ=255)

                    tttAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATAc                                                                        <  1:2753271/91‑1 (MQ=255)

                    tttAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATAc                                                                        <  1:2753119/91‑1 (MQ=255)

                     ttAATATACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATAcc                                                                       >  1:3223036/1‑91 (MQ=255)

                      taataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCa                                                                      <  1:2922241/91‑1 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     >  1:1706477/1‑91 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     >  1:24755/1‑91 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     <  1:2254122/91‑1 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     <  1:2254073/91‑1 (MQ=255)

                       aataaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCAc                                                                     >  1:3742158/1‑91 (MQ=255)

                         taaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCCCtt                                                                   >  1:3397172/1‑91 (MQ=255)

                         taaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACtt                                                                   <  1:1751481/91‑1 (MQ=255)

                         taaACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACtt                                                                   >  1:1010323/1‑91 (MQ=255)

                          aaaCCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTa                                                                  <  1:2284899/91‑1 (MQ=255)

                              cTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaata                                                              >  1:2220062/1‑91 (MQ=255)

                              cTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaata                                                              >  1:2219785/1‑91 (MQ=255)

                               tGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaataa                                                             <  1:931451/91‑1 (MQ=255)

                                gATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaataat                                                            >  1:511552/1‑91 (MQ=255)

                                gATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAaataat                                                            <  1:1107381/91‑1 (MQ=255)

                                 aTTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAataata                                                           >  1:1287239/1‑91 (MQ=255)

                                  tttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAatat                                                          >  1:1358668/1‑91 (MQ=255)

                                  tttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACCTAGAATTGATAGTAGCCATAATCATACCACTTAAATAatat                                                          >  1:2015408/1‑91 (MQ=255)

                                   ttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATg                                                         <  1:1259113/91‑1 (MQ=255)

                                   ttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATg                                                         <  1:4015991/91‑1 (MQ=255)

                                   ttAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATg                                                         <  1:42999/91‑1 (MQ=255)

                                    tAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGt                                                        >  1:1358454/1‑91 (MQ=255)

                                     aGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGtt                                                       <  1:2836386/91‑1 (MQ=255)

                                     aGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGtt                                                       <  1:2682252/91‑1 (MQ=255)

                                     aGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGtt                                                       <  1:2722672/91‑1 (MQ=255)

                                      ggAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGttt                                                      >  1:401625/1‑91 (MQ=255)

                                       gAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTg                                                     >  1:2155473/1‑91 (MQ=255)

                                        aaaCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGa                                                    >  1:3621682/1‑91 (MQ=255)

                                        aaaCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGa                                                    >  1:3621451/1‑91 (MQ=255)

                                          aCATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatc                                                  >  1:1581785/1‑91 (MQ=255)

                                           cATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGatca                                                 >  1:2754599/1‑91 (MQ=255)

                                              TCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCg                                              <  1:2997809‑M1/91‑1 (MQ=255)

                                              TCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCg                                              <  1:2996850‑M1/91‑1 (MQ=255)

                                                TAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGc                                            <  1:1913008‑M1/91‑1 (MQ=255)

                                                 AAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATTATACCACTTAAATAATATGTTTGATCATCGGCa                                           <  1:3398808‑M1/91‑1 (MQ=255)

                                                 AAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCa                                           <  1:3447213‑M1/91‑1 (MQ=255)

                                                  agtccgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                          >  1:1487227‑M2/41‑91 (MQ=255)

                                                  AGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCAt                                          <  1:3999503‑M1/91‑1 (MQ=255)

                                                   GTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATa                                         >  1:3040924‑M1/1‑91 (MQ=255)

                                                   GTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATa                                         >  1:2893157‑M1/1‑91 (MQ=255)

                                                    tccgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATaa                                        >  1:902408‑M2/39‑91 (MQ=255)

                                                     CCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAt                                       >  1:1146155‑M1/1‑91 (MQ=255)

                                                      cgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtt                                      >  1:32836‑M2/37‑91 (MQ=255)

                                                      cgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtt                                      >  1:1498782‑M2/37‑91 (MQ=255)

                                                      cgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtt                                      >  1:2743933‑M2/37‑91 (MQ=255)

                                                      cgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtt                                      >  1:2743664‑M2/37‑91 (MQ=255)

                                                      cgaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtt                                      >  1:1746127‑M2/37‑91 (MQ=255)

                                                       gaaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttt                                     >  1:493484‑M2/36‑91 (MQ=255)

                                                        aaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtttt                                    >  1:3840493‑M2/35‑91 (MQ=255)

                                                        aaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtttt                                    >  1:738737‑M2/35‑91 (MQ=255)

                                                        aaggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAtttt                                    >  1:738780‑M2/35‑91 (MQ=255)

                                                         aggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAAttttt                                   >  1:1521983‑M2/34‑91 (MQ=255)

                                                         aggtatgacagaatgggagcgaggacttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGACATAAttttt                                   >  1:515479‑M2/34‑91 (MQ=255)

                                                          cTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTttta                                  >  1:3786584/1‑91 (MQ=255)

                                                           tCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttat                                 <  1:3383909/91‑1 (MQ=255)

                                                            cccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttatt                                <  1:826088/91‑1 (MQ=255)

                                                            cccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttatt                                <  1:2670581/91‑1 (MQ=255)

                                                             ccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttattt                               >  1:1779073/1‑91 (MQ=255)

                                                             ccATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttattt                               <  1:17406/91‑1 (MQ=255)

                                                              cATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTtttattta                              >  1:2320056/1‑91 (MQ=255)

                                                               aTTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTttatttat                             >  1:848880/1‑91 (MQ=255)

                                                                ttCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTtatttatt                            >  1:2481319/1‑91 (MQ=255)

                                                                 tCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTg                           <  1:1766127/91‑1 (MQ=255)

                                                                    gTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCt                        >  1:696495/1‑91 (MQ=255)

                                                                      cATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGc                      <  1:3844230/91‑1 (MQ=255)

                                                                       aTACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCt                     >  1:2781550/1‑91 (MQ=255)

                                                                         aCCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTc                   <  1:2146563/91‑1 (MQ=255)

                                                                         aCCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTc                   <  1:3573972/91‑1 (MQ=255)

                                                                          ccTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTca                  <  1:2391895/91‑1 (MQ=255)

                                                                           cTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTcac                 <  1:2676144/91‑1 (MQ=255)

                                                                            ttCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTcaca                <  1:2048215/91‑1 (MQ=255)

                                                                              cGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAat              >  1:164455/1‑91 (MQ=255)

                                                                                  cttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATAttt          >  1:743997‑M2/9‑91 (MQ=255)

                                                                                   ttagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATAtttt         >  1:216213‑M2/8‑91 (MQ=255)

                                                                                    tagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTg        >  1:3806699‑M2/7‑91 (MQ=255)

                                                                                    tagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTg        >  1:650470‑M2/7‑91 (MQ=255)

                                                                                    tagaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTg        >  1:26235‑M2/7‑91 (MQ=255)

                                                                                     agaatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGa       <  1:1954855‑M2/86‑1 (MQ=255)

                                                                                     agaatTGATAGTAGCCATAATCATACCACGTGAATAATATGTTTGATCATCGGGATAATTTTTATTTATTGTCTGCTTCACAATATTTTGa       <  1:3318010‑M2/86‑1 (MQ=255)

                                                                                       aatTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGc     <  1:3543078‑M2/88‑1 (MQ=255)

                                                                                          tGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCAtt  >  1:1913890/1‑91 (MQ=255)

TTGCTATCGCTAACTCAAAATTTAATAAACCTGATTTAGGAAACATTCTAAGTCCTCGCTCCCATTCTGTCATACCTTCGGACTTAGAATTGATAGTAGCCATAATCATACCACTTAAATAATATGTTTGATCATCGGCATAATTTTTATTTATTGTCTGCTTCACAATATTTTGAGCATT  >  USA300TCH1516_ALE/1659976‑1660156

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.