New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 169376488 (0.890)11 (0.130) 6/140 NT 11.6% coding (1031/1158 nt) hemN_1 Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR
?USA300TCH1516_ALE = 1693780 91 (1.060)coding (1015/1158 nt) hemN_1 Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR

Only 100 of 121 total aligned reads displayed.

ATTTGTAAGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAA  >  USA300TCH1516_ALE/1693691‑1693870
                                                                                         |                                                                                          
aTTTGTAAGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAt                                                                                           >  1:917169‑M2/1‑90 (MQ=255)
  ttGTAAGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttg                                                                                         >  1:3694580‑M2/1‑88 (MQ=255)
   tGTAAGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttgg                                                                                        >  1:2642078‑M2/1‑87 (MQ=255)
      aaGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttggtca                                                                                     >  1:885260‑M2/1‑84 (MQ=255)
      aaGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttggtca                                                                                     >  1:3799076‑M2/1‑84 (MQ=255)
      aaGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttggtca                                                                                     >  1:3997154‑M2/1‑84 (MQ=255)
      aaGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttggtca                                                                                     <  1:7875‑M2/91‑8 (MQ=255)
       aGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttggtcaa                                                                                    >  1:506315‑M2/1‑83 (MQ=255)
         tGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGAttggtcaaac                                                                                  >  1:4129060‑M2/1‑81 (MQ=255)
          gCAATCACATCGTTCTTTTCTACAATTACTTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAAct                                                                                 >  1:1052827/1‑91 (MQ=255)
             aTCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAActtct                                                                              >  1:2871198/1‑91 (MQ=255)
               cacaTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCttt                                                                            <  1:662689/91‑1 (MQ=255)
                acaTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCtttt                                                                           <  1:703223/91‑1 (MQ=255)
                 caTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCttttt                                                                          >  1:1303689/1‑91 (MQ=255)
                 caTCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCttttt                                                                          >  1:4107841/1‑91 (MQ=255)
                    cGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGaa                                                                       >  1:827756/1‑91 (MQ=255)
                     gTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAAc                                                                      >  1:2328733/1‑91 (MQ=255)
                      ttCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAAcc                                                                     <  1:3774115/91‑1 (MQ=255)
                      ttCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAAcc                                                                     <  1:3773106/91‑1 (MQ=255)
                       tCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACct                                                                    >  1:2042552/1‑91 (MQ=255)
                         ttttCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctac                                                                  <  1:111618/91‑1 (MQ=255)
                         ttttCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctac                                                                  <  1:1266752/91‑1 (MQ=255)
                           ttCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctacta                                                                >  1:4049567/1‑91 (MQ=255)
                           ttCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctacta                                                                >  1:318157/1‑91 (MQ=255)
                            tCTACAAGTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctactac                                                               <  1:2072192/91‑1 (MQ=255)
                             cTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctactact                                                              >  1:3335158/1‑91 (MQ=255)
                             cTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctactact                                                              >  1:2594247/1‑91 (MQ=255)
                             cTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACctactact                                                              >  1:2093306/1‑91 (MQ=255)
                               aCAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCtactactac                                                            <  1:499603/91‑1 (MQ=255)
                                 aattaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTc                                                          <  1:788470/91‑1 (MQ=255)
                                  attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                         >  1:1923781/1‑91 (MQ=255)
                                  attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                         <  1:1720013/91‑1 (MQ=255)
                                  attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                         >  1:1033444/1‑91 (MQ=255)
                                  attaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTca                                                         <  1:779207/91‑1 (MQ=255)
                                   ttaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcac                                                        <  1:737700/91‑1 (MQ=255)
                                   ttaattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcac                                                        <  1:738037/91‑1 (MQ=255)
                                   ttaagtCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcac                                                        <  1:3460350/91‑1 (MQ=255)
                                    taattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcaca                                                       <  1:1780524/91‑1 (MQ=255)
                                    taattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTcaca                                                       <  1:665648/91‑1 (MQ=255)
                                     aattCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCacac                                                      >  1:2540155/1‑91 (MQ=255)
                                      attCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACAcc                                                     >  1:1284254/1‑91 (MQ=255)
                                      attCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACAcc                                                     <  1:1434905/91‑1 (MQ=255)
                                       ttCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCt                                                    >  1:3664176/1‑91 (MQ=255)
                                       ttCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCt                                                    <  1:326002/91‑1 (MQ=255)
                                       ttCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCt                                                    <  1:325897/91‑1 (MQ=255)
                                        tCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCtt                                                   <  1:3748219/91‑1 (MQ=255)
                                        tCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCtt                                                   >  1:232499/1‑91 (MQ=255)
                                           ttCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCAt                                                <  1:918726/91‑1 (MQ=255)
                                             ctctTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCAttt                                              <  1:1867107/91‑1 (MQ=255)
                                              tctTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTa                                             >  1:420984/1‑91 (MQ=255)
                                                  ttAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACg                                         <  1:2522203/91‑1 (MQ=255)
                                                   tAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGc                                        <  1:2049643/91‑1 (MQ=255)
                                                    aaaTTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCa                                       >  1:2354360/1‑91 (MQ=255)
                                                    aaaTTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCa                                       >  1:2354207/1‑91 (MQ=255)
                                                    aaaTTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCAATTAAACGCa                                       >  1:3971479/1‑91 (MQ=255)
                                                     aaTTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCaa                                      >  1:2790473/1‑91 (MQ=255)
                                                         atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                  >  1:2713901/1‑91 (MQ=255)
                                                         atttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCa                                  >  1:3983920/1‑91 (MQ=255)
                                                         atttattGTTTGACCAAAGACACTTTCAATAGATTGGACAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCGACCCa                                  >  1:3859732/1‑91 (MQ=255)
                                                          tttattGTTTGACCAAAGACACTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtg                                 <  1:2813353‑M2/91‑60 (MQ=255)
                                                           ttattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAg                                >  1:2737243/1‑91 (MQ=255)
                                                            tattGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGa                               <  1:1243641/91‑1 (MQ=255)
                                                             attGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGaa                              >  1:1252093/1‑91 (MQ=255)
                                                              ttGTTTGACCAAAGACACTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtgattg                             <  1:3332956‑M2/91‑64 (MQ=255)
                                                              ttGTTTGACCAAAGACACTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtgattg                             <  1:3332985‑M2/91‑64 (MQ=255)
                                                               tGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAAc                            <  1:1349662/91‑1 (MQ=255)
                                                               tGTTTGACCAAAGACACTGTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAAc                            >  1:1436520/1‑91 (MQ=255)
                                                                gTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACa                           >  1:843419/1‑91 (MQ=255)
                                                                gTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACa                           <  1:3254901/91‑1 (MQ=255)
                                                                 tttGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGaaatgt                          <  1:2095779/91‑4 (MQ=255)
                                                                 tttGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAt                          <  1:481899/91‑1 (MQ=255)
                                                                 tttGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAt                          >  1:1490452/1‑91 (MQ=255)
                                                                   tGACCAAAGACACTTTCAATAGAttggtcaaacaataaataatttacaagagaaggaatcacttgtagaaaagaacgatgtgattgcactt                        <  1:3319269‑M2/91‑69 (MQ=255)
                                                                   tGACCAAAGACACTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaatcacttgtagaaaagaacgatgtgattgcactt                        <  1:3319616‑M2/91‑69 (MQ=255)
                                                                   tGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAttt                        <  1:3747928/91‑1 (MQ=255)
                                                                   tGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACAttt                        >  1:2301557/1‑91 (MQ=255)
                                                                     aCCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttct                      <  1:1946888/91‑1 (MQ=255)
                                                                        aaaGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttct                   <  1:1373618/91‑1 (MQ=255)
                                                                         aaGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttctt                  >  1:1372893/1‑91 (MQ=255)
                                                                         aaGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttctt                  >  1:3443416/1‑91 (MQ=255)
                                                                         aaGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttctt                  >  1:3692491/1‑91 (MQ=255)
                                                                          aGACACTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtgattgcacttacaaata                 <  1:4034464‑M2/91‑76 (MQ=255)
                                                                          aGACACTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtgattgcacttacaaata                 <  1:1564103‑M2/91‑76 (MQ=255)
                                                                          aGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATttcttcttc                 <  1:459372/91‑1 (MQ=255)
                                                                           gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                <  1:3427670/91‑1 (MQ=255)
                                                                           gACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTcc                >  1:1519224/1‑91 (MQ=255)
                                                                            acacTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCa               >  1:939478/1‑91 (MQ=255)
                                                                             cacTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtgattgcacttacaaatagag              <  1:2165302‑M2/91‑79 (MQ=255)
                                                                             cacTTTCAATAGAttggtcaaacaataaataatttaaaagagaaggaattaattgtagaaaagaacgatgtgattgcacttacaaatagag              <  1:2165776‑M2/91‑79 (MQ=255)
                                                                             cacTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAt              >  1:961785/1‑91 (MQ=255)
                                                                             cacTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCAt              >  1:1942814/1‑91 (MQ=255)
                                                                                tttCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATtct           >  1:2209172/1‑91 (MQ=255)
                                                                                  tCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATtctct         >  1:3851074/1‑91 (MQ=255)
                                                                                   cAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATtctctc        <  1:4069133/91‑1 (MQ=255)
                                                                                    aaTAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCa       <  1:1180238/91‑1 (MQ=255)
                                                                                       aGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTc    <  1:1900966/91‑1 (MQ=255)
                                                                                       aGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTc    <  1:1901555/91‑1 (MQ=255)
                                                                                       aGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTc    <  1:3431610/91‑1 (MQ=255)
                                                                                       aGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTc    <  1:3431829/91‑1 (MQ=255)
                                                                                         aTTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCaa  >  1:1133741/1‑91 (MQ=255)
                                                                                         |                                                                                          
ATTTGTAAGTGCAATCACATCGTTCTTTTCTACAATTAATTCCTTCTCTTTTAAATTATTTATTGTTTGACCAAAGACACTTTCAATAGATTGGTCAAACTTCTTTTTGAACCTACTACTACTCACACCTTCATTTAAACGCAACCCAAGAAACATTTCTTCTTCCATTCTCTCAGTCAA  >  USA300TCH1516_ALE/1693691‑1693870

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.