BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1766678 =	73 (0.740)	8 (0.090)	5/140	NT	12.2%	intergenic (+22/+201)	tag/USA300HOU_RS08820	DNA‑3‑methyladenine glycosylase 1/hypothetical protein
*	?	USA300TCH1516_ALE	1766721 =	51 (0.590)	8 (0.090)	5/140	NT	12.2%	intergenic (+65/+158)	tag/USA300HOU_RS08820	DNA‑3‑methyladenine glycosylase 1/hypothetical protein

Only 100 of 112 total aligned reads displayed.

TCCATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAC  >  USA300TCH1516_ALE/1766632‑1766810

tCCATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGttttt                                                                                          >  1:12776/1‑91 (MQ=255)

 ccATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGtttttt                                                                                         >  1:1040516/1‑91 (MQ=255)

 ccATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGtttttt                                                                                         <  1:1223026/91‑1 (MQ=255)

  cATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTa                                                                                        >  1:1091336/1‑91 (MQ=255)

  cATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTa                                                                                        <  1:3167120/91‑1 (MQ=255)

  cATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTa                                                                                        <  1:3167183/91‑1 (MQ=255)

  cATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTa                                                                                        <  1:3167450/91‑1 (MQ=255)

   aTCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTaa                                                                                       <  1:3924578/91‑1 (MQ=255)

   aTCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTaa                                                                                       <  1:3924196/91‑1 (MQ=255)

     cAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAtg                                                                                     <  1:3620038/91‑1 (MQ=255)

      aaaGCCTAAACACAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAAtgt                                                                                    <  1:409370/91‑1 (MQ=255)

        aactttaacttatgatttgaataaattttcacattaaaAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGa                                                                                  >  1:3750040‑M1/39‑91 (MQ=255)

         gCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGaa                                                                                 >  1:2486292/1‑91 (MQ=255)

           cTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGaaaa                                                                               >  1:721066/1‑91 (MQ=255)

            tAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAt                                                                              <  1:688924/91‑1 (MQ=255)

            tAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAt                                                                              >  1:209582/1‑91 (MQ=255)

            tAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAAt                                                                              >  1:3514311/1‑91 (MQ=255)

                     ttaattTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCaaa                                                                     <  1:3061837/91‑1 (MQ=255)

                      taattTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAAt                                                                    >  1:2908589/1‑91 (MQ=255)

                        attTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCa                                                                  <  1:4046319/91‑1 (MQ=255)

                        attTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCATTTTTTAATGTGAAAATTTATTCAAATCa                                                                  >  1:3324783/1‑91 (MQ=255)

                         tttGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCAt                                                                 >  1:2664983/1‑91 (MQ=255)

                         tttGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCAt                                                                 >  1:2663783/1‑91 (MQ=255)

                          ttGCTATAGCATCATAAAGTAAACGAGACATGATCTATTTTTAAGTAATAGACGGTCGCGTTTTTTAATGTGAAAATTTATTCAAATCATa                                                                <  1:3315016/91‑1 (MQ=255)

                            gCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAg                                                              >  1:2449841/1‑91 (MQ=255)

                            gCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAg                                                              >  1:1181470/1‑91 (MQ=255)

                             cTATAGCATCATTAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGt                                                             >  1:3198336/1‑91 (MQ=255)

                                    tcacattaaaaaacgagacagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGtt                                                      >  1:3750040‑M2/54‑91 (MQ=255)

                                    atcatAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGtt                                                      <  1:1386859/91‑1 (MQ=255)

                                     tcatAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTc                                                     >  1:2496953/1‑91 (MQ=255)

                                        tAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCaa                                                  >  1:3181095/1‑91 (MQ=255)

                                        tAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCaa                                                  <  1:2302798/91‑1 (MQ=255)

                                        tAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCaa                                                  >  1:2012073/1‑91 (MQ=255)

                                        tAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCaa                                                  <  1:1971106/91‑1 (MQ=255)

                                         aaaGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAg                                                 <  1:2725616/91‑1 (MQ=255)

                                          aaGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGt                                                <  1:1669870/91‑1 (MQ=255)

                                          aaGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGt                                                <  1:1667782/91‑1 (MQ=255)

                                           aGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGtt                                               <  1:3570827/91‑1 (MQ=255)

                                           aGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGtt                                               <  1:3570686/91‑1 (MQ=255)

                                           aGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGtt                                               >  1:775132/1‑91 (MQ=255)

                                            gTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTa                                              >  1:1411071/1‑91 (MQ=255)

                                              AAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAAt                                            <  1:2658882‑M1/91‑1 (MQ=255)

                                               AACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATg                                           <  1:1310298‑M1/91‑1 (MQ=255)

                                               AACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATg                                           <  1:1310334‑M1/91‑1 (MQ=255)

                                               AACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATg                                           <  1:2662497‑M1/91‑1 (MQ=255)

                                                ACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGc                                          <  1:761115‑M1/91‑1 (MQ=255)

                                                 cgagacagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGct                                         >  1:1215230‑M2/41‑91 (MQ=255)

                                                 CGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGct                                         >  1:2207745‑M1/1‑91 (MQ=255)

                                                 CGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGct                                         >  1:3375078‑M1/1‑91 (MQ=255)

                                                  GAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctc                                        <  1:1125733‑M1/91‑1 (MQ=255)

                                                   agacagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       >  1:4060439‑M2/39‑91 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  1:2905508‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  1:2905678‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  1:1541793‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       >  1:885760‑M1/1‑91 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       <  1:63963‑M1/91‑1 (MQ=255)

                                                   AGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGctct                                       >  1:357056‑M1/1‑91 (MQ=255)

                                                     acagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     >  1:1620780‑M2/37‑91 (MQ=255)

                                                     acagtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     >  1:1620737‑M2/37‑91 (MQ=255)

                                                     ACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     <  1:1059213‑M1/91‑1 (MQ=255)

                                                     ACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGc                                     >  1:728914‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    <  1:805204‑M1/91‑1 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    <  1:805173‑M1/91‑1 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    <  1:3691429‑M1/91‑1 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:730712‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:951052‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:3520264‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:1660240‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:2095877‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:2561691‑M1/1‑91 (MQ=255)

                                                      CATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCt                                    >  1:2765076‑M1/1‑91 (MQ=255)

                                                       agtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTa                                   >  1:3130860‑M2/35‑91 (MQ=255)

                                                       agtctattagttaaaaatagatgatgtctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTa                                   >  1:3130803‑M2/35‑91 (MQ=255)

                                                         catcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAat                                 >  1:1622440/1‑91 (MQ=255)

                                                         catcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAat                                 >  1:198338/1‑91 (MQ=255)

                                                         catcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAat                                 >  1:2109037/1‑91 (MQ=255)

                                                          atcTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAata                                <  1:2172339/91‑1 (MQ=255)

                                                             tATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTa                             <  1:1643874/91‑1 (MQ=255)

                                                             tATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTa                             <  1:1736006/91‑1 (MQ=255)

                                                              aTTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAg                            <  1:3896478/91‑1 (MQ=255)

                                                              aTTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAg                            <  1:3896183/91‑1 (MQ=255)

                                                               tttttAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGa                           <  1:1463991/91‑1 (MQ=255)

                                                                   tAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATc                       >  1:3935772/1‑91 (MQ=255)

                                                                    aaCTAATAGACTGTCTCGTTTTTTAATGTGAACATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCt                      <  1:3542530/91‑1 (MQ=255)

                                                                    aaCTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCt                      <  1:3469540/91‑1 (MQ=255)

                                                                    aaCTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTCAATGCTCTGCTAATATTAGATATCt                      >  1:3851008/1‑91 (MQ=255)

                                                                      cTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTa                    <  1:1045846/91‑1 (MQ=255)

                                                                      cTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTa                    <  1:1045871/91‑1 (MQ=255)

                                                                      cTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTa                    <  1:2752591/91‑1 (MQ=255)

                                                                        aaTAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAAt                  >  1:73743/1‑91 (MQ=255)

                                                                             aCTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaa             >  1:2872067/1‑91 (MQ=255)

                                                                             aCTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaa             <  1:829788/91‑1 (MQ=255)

                                                                             aCTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaa             >  1:3970255/1‑91 (MQ=255)

                                                                             aCTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaa             >  1:902202/1‑91 (MQ=255)

                                                                              cTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaaa            <  1:3129937/91‑1 (MQ=255)

                                                                              cTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTaaaa            <  1:3130008/91‑1 (MQ=255)

                                                                                 tctcgtttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATa         >  1:2818652‑M2/9‑91 (MQ=255)

                                                                                       ttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTa   <  1:609493‑M2/89‑1 (MQ=255)

                                                                                       ttTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTa   <  1:1296834‑M2/89‑1 (MQ=255)

                                                                                        tTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAc  <  1:695185‑M2/90‑1 (MQ=255)

TCCATCAAAGCCTAAACATAATTAATTTGCTATAGCATCATAAAGTAAACGAGACATCATCTATTTTTAACTAATAGACTGTCTCGTTTTTTAATGTGAAAATTTATTCAAATCATAAGTTAAAGTTCCAAGTTAATGCTCTGCTAATATTAGATATCTTAATCTAAAAATAGATGTAC  >  USA300TCH1516_ALE/1766632‑1766810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.