BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1822865 =	79 (0.800)	7 (0.080)	6/142	NT	8.4%	intergenic (+186/+60)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
*	?	USA300TCH1516_ALE	1822909 =	82 (0.940)	7 (0.080)	6/142	NT	8.4%	intergenic (+230/+16)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

Only 100 of 125 total aligned reads displayed.

CGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTT  >  USA300TCH1516_ALE/1822821‑1822999

cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                                          <  1:1769970/91‑1 (MQ=255)

cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                                          >  1:1449052/1‑91 (MQ=255)

   gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                                       <  1:2907730/91‑1 (MQ=255)

   gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                                       <  1:4018362/91‑1 (MQ=255)

   gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                                       <  1:2908484/91‑1 (MQ=255)

      aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttat                                                                                    <  1:3316759/91‑1 (MQ=255)

      aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttat                                                                                    <  1:348610/91‑1 (MQ=255)

        gagaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATatttattt                                                                                  >  1:3749765/1‑91 (MQ=255)

        gagaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATatttattt                                                                                  >  1:3748987/1‑91 (MQ=255)

         agaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATAtttattta                                                                                 >  1:2105257/1‑91 (MQ=255)

          gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                                <  1:916334/91‑1 (MQ=255)

          gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                                <  1:1178634/91‑1 (MQ=255)

           tcggtggtttaaaataatttttaaataaatattAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                               >  1:3967766‑M1/34‑91 (MQ=255)

           aCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                               >  1:1308390/1‑91 (MQ=255)

           aCATTACAATAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaa                                                                               >  1:1376458/1‑91 (MQ=255)

            cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                              <  1:2909977/91‑1 (MQ=255)

            cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                              <  1:2910009/91‑1 (MQ=255)

               tACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatt                                                                           >  1:679473/1‑91 (MQ=255)

               tACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatt                                                                           >  1:729313/1‑91 (MQ=255)

                      gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                                    >  1:304506/1‑91 (MQ=255)

                      gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                                    >  1:2115352/1‑91 (MQ=255)

                        tAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAac                                                                  <  1:2782581/91‑1 (MQ=255)

                        tAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAac                                                                  >  1:3385892/1‑91 (MQ=255)

                        tAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAac                                                                  <  1:2782668/91‑1 (MQ=255)

                         aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                                 <  1:236906/91‑1 (MQ=255)

                         aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                                 <  1:236986/91‑1 (MQ=255)

                         aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                                 <  1:237833/91‑1 (MQ=255)

                            tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                              <  1:3522038/91‑1 (MQ=255)

                            tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                              <  1:4133028/91‑1 (MQ=255)

                              tttaaataaatattaagcgtctatctccgctacaattatatgtaggaggtagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGa                                                            >  1:3967766‑M2/59‑91 (MQ=255)

                              tttaaataaatattaagcgtctatctccgctacaattatatgtaggaggtagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGa                                                            >  1:2812309‑M2/59‑91 (MQ=255)

                              tCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGa                                                            <  1:3685160/91‑1 (MQ=255)

                               cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                           >  1:3175411/1‑91 (MQ=255)

                               cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                           >  1:3174060/1‑91 (MQ=255)

                               cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                           >  1:2392391/1‑91 (MQ=255)

                               cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                           >  1:1488522/1‑91 (MQ=255)

                                  aCAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGt                                                        >  1:1694150/1‑91 (MQ=255)

                                  aCAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGt                                                        >  1:521922/1‑91 (MQ=255)

                                   cAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTc                                                       <  1:3445763/91‑1 (MQ=255)

                                    aaTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCa                                                      >  1:1053279/1‑91 (MQ=255)

                                      tACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGCAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATa                                                    >  1:3511098/1‑91 (MQ=255)

                                      aatattaagcgtctatctccgctacaattatatgtaggaggtagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATa                                                    >  1:2671650‑M2/51‑91 (MQ=255)

                                       aCAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATaa                                                   <  1:955697/91‑1 (MQ=255)

                                        cAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAAc                                                  >  1:1895911/1‑91 (MQ=255)

                                           aaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATc                                               <  1:126998/91‑1 (MQ=255)

                                           aaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATc                                               >  1:729825/1‑91 (MQ=255)

                                            AAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCa                                              >  1:49623‑M1/1‑91 (MQ=255)

                                              GCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACg                                            <  1:3106286‑M1/91‑1 (MQ=255)

                                               CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                           >  1:895373‑M1/1‑91 (MQ=255)

                                               CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                           >  1:711680‑M1/1‑91 (MQ=255)

                                               CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                           >  1:2490121‑M1/1‑91 (MQ=255)

                                               CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                           >  1:894114‑M1/1‑91 (MQ=255)

                                               CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                           >  1:1886570‑M1/1‑91 (MQ=255)

                                               CGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                           >  1:1886542‑M1/1‑91 (MQ=255)

                                                  CTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                                        <  1:1828109‑M1/91‑1 (MQ=255)

                                                   tatctccgctacaattatatgtaggaggtagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCaa                                       >  1:4088026‑M2/38‑91 (MQ=255)

                                                    ACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                                      <  1:3365381‑M1/91‑1 (MQ=255)

                                                    ACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                                      >  1:2233534‑M1/1‑91 (MQ=255)

                                                    ACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAAt                                      <  1:3365343‑M1/91‑1 (MQ=255)

                                                      ctcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATCATTTTAAACCACCGAATGTCATAACATCACGGGCAATCa                                    >  1:2049319/1‑91 (MQ=255)

                                                       tcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCAt                                   >  1:2426314/1‑91 (MQ=255)

                                                       tccgctacaattatatgtaggaggtagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCAt                                   >  1:2582632‑M2/34‑91 (MQ=255)

                                                        ccgctacaattatatgtaggaggtagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAACCATa                                  >  1:3155301‑M2/33‑91 (MQ=255)

                                                         ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                                 <  1:31163/91‑1 (MQ=255)

                                                         ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                                 <  1:3019616/91‑1 (MQ=255)

                                                         ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                                 >  1:2827351/1‑91 (MQ=255)

                                                         ctACATATAATTATAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                                 >  1:3177839/1‑91 (MQ=255)

                                                          tACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACt                                <  1:1678754/91‑1 (MQ=255)

                                                          tACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACt                                <  1:1679304/91‑1 (MQ=255)

                                                           aCATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACtt                               <  1:2621801/91‑1 (MQ=255)

                                                           aCATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACtt                               <  1:2882383/91‑1 (MQ=255)

                                                            cATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACttt                              >  1:2834019/1‑91 (MQ=255)

                                                             atatAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttc                             >  1:3197812/1‑91 (MQ=255)

                                                              tataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttct                            <  1:1091450/91‑1 (MQ=255)

                                                               ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                           <  1:3147531/91‑1 (MQ=255)

                                                               ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                           <  1:806793/91‑1 (MQ=255)

                                                                taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc                          <  1:3553618/91‑1 (MQ=255)

                                                                taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc                          <  1:511312/91‑1 (MQ=255)

                                                                taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc                          <  1:511092/91‑1 (MQ=255)

                                                                taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc                          >  1:1371075/1‑91 (MQ=255)

                                                                taATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttcttc                          >  1:1371258/1‑91 (MQ=255)

                                                                  aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt                        >  1:3793916/1‑91 (MQ=255)

                                                                     gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg                     >  1:4121433/1‑91 (MQ=255)

                                                                     gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg                     >  1:2631926/1‑91 (MQ=255)

                                                                      tAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGt                    >  1:617088/1‑91 (MQ=255)

                                                                         cGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTgg                 <  1:1475330/91‑1 (MQ=255)

                                                                         cGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTgg                 <  1:3082904/91‑1 (MQ=255)

                                                                           gagaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGaa               >  1:2645409/1‑91 (MQ=255)

                                                                            agaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAAt              >  1:2265449/1‑91 (MQ=255)

                                                                             gaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATa             >  1:1299405/1‑91 (MQ=255)

                                                                               tagacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAAc           <  1:431428‑M2/82‑1 (MQ=255)

                                                                                 gacgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGa         >  1:2767295‑M2/8‑91 (MQ=255)

                                                                                  acgcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGgaataagatc        >  1:636880‑M2/7‑87 (MQ=255)

                                                                                    gcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACaa      <  1:1482454‑M2/87‑1 (MQ=255)

                                                                                    gcttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACaa      <  1:1482993‑M2/87‑1 (MQ=255)

                                                                                      ttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACt    <  1:2126930‑M2/89‑1 (MQ=255)

                                                                                      ttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACt    <  1:3392598‑M2/89‑1 (MQ=255)

                                                                                      ttAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACt    >  1:3895208‑M2/3‑91 (MQ=255)

                                                                                        aaTATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACttt  >  1:1282964/1‑91 (MQ=255)

                                                                                        aaTATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACttt  <  1:1213785/91‑1 (MQ=255)

CGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAACGACAACTTT  >  USA300TCH1516_ALE/1822821‑1822999

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.