BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1878597 =	85 (0.860)	6 (0.080)	5/124	NT	10.2%	intergenic (+56/+61)	USA300HOU_RS09320/ebh_2	Ferredoxin‑‑NADP reductase/Extracellular matrix‑binding protein ebh
*	?	USA300TCH1516_ALE	1878652 =	40 (0.520)	6 (0.080)	5/124	NT	10.2%	intergenic (+111/+6)	USA300HOU_RS09320/ebh_2	Ferredoxin‑‑NADP reductase/Extracellular matrix‑binding protein ebh

Only 100 of 103 total aligned reads displayed.

CTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCC  >  USA300TCH1516_ALE/1878566‑1878742

ctTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTa                                                                                        >  1:3844068/1‑91 (MQ=255)

ctTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTa                                                                                        >  1:4070455/1‑91 (MQ=255)

 tttAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTaa                                                                                       >  1:3156953/1‑91 (MQ=255)

    agtagATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTa                                                                                    >  1:3279561/1‑91 (MQ=255)

      tagATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATg                                                                                  <  1:4130209/91‑1 (MQ=255)

       agATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGa                                                                                 <  1:379776/91‑1 (MQ=255)

        gATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGAt                                                                                >  1:2591949/1‑91 (MQ=255)

        gATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGAt                                                                                >  1:1210564/1‑91 (MQ=255)

              cTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCtttt                                                                          <  1:2017252/91‑1 (MQ=255)

                 tttCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCg                                                                       >  1:2245814/1‑91 (MQ=255)

                 tttCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCg                                                                       >  1:1008857/1‑91 (MQ=255)

                 tttCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCg                                                                       >  1:2451987/1‑91 (MQ=255)

                  ttcattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGt                                                                      <  1:1626832/91‑1 (MQ=255)

                  ttcattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGt                                                                      <  1:551070/91‑1 (MQ=255)

                   tcattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGtt                                                                     >  1:1076208/1‑91 (MQ=255)

                    cattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGttt                                                                    <  1:3390165/91‑1 (MQ=255)

                    cattcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGttt                                                                    <  1:2330008/91‑1 (MQ=255)

                     attcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGtttt                                                                   >  1:2911839/1‑91 (MQ=255)

                      ttcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGttttt                                                                  >  1:2171720/1‑91 (MQ=255)

                      ttcaAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGttttt                                                                  >  1:2171159/1‑91 (MQ=255)

                        caAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAg                                                                >  1:2489494/1‑91 (MQ=255)

                        caAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAg                                                                >  1:2998824/1‑91 (MQ=255)

                        caAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGAGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAg                                                                >  1:966201/1‑91 (MQ=255)

                         aaaTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGt                                                               <  1:2507409/91‑1 (MQ=255)

                         aaaTAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGt                                                               <  1:1961048/91‑1 (MQ=255)

                                AATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtctt                                                        <  1:1308859‑M1/91‑1 (MQ=255)

                                AATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtctt                                                        <  1:1974677‑M1/91‑1 (MQ=255)

                                AATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtctt                                                        >  1:2620171‑M1/1‑91 (MQ=255)

                                AATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtctt                                                        >  1:4046310‑M1/1‑91 (MQ=255)

                                 ATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtcttc                                                       <  1:3830920‑M1/91‑1 (MQ=255)

                                  TGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGtcttct                                                      <  1:693762‑M1/91‑1 (MQ=255)

                                   GACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTa                                                     <  1:101096‑M1/91‑1 (MQ=255)

                                   GACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTa                                                     <  1:1788988‑M1/91‑1 (MQ=255)

                                   GACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTa                                                     <  1:1613844‑M1/91‑1 (MQ=255)

                                    ACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAg                                                    >  1:2646554‑M1/1‑91 (MQ=255)

                                     CCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCCAGc                                                   <  1:3340105‑M1/91‑1 (MQ=255)

                                     CCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGACTCTTTTTCGTTTTTAGTACGTCTTCCAGc                                                   <  1:3340163‑M1/91‑1 (MQ=255)

                                      CTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCt                                                  <  1:102269‑M1/91‑1 (MQ=255)

                                       TTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTa                                                 <  1:4053487‑M1/91‑1 (MQ=255)

                                        taatataacgacactttttagtgactcagttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTaa                                                >  1:1028751‑M2/47‑91 (MQ=255)

                                         aatataacgacactttttagtgactcagttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAAc                                               >  1:3562289‑M2/46‑91 (MQ=255)

                                         AATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAAc                                               <  1:4139927‑M1/91‑1 (MQ=255)

                                          ATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACa                                              >  1:3125263‑M1/1‑91 (MQ=255)

                                          ATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACa                                              >  1:3123855‑M1/1‑91 (MQ=255)

                                             taacgacactttttagtgactcagttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAg                                           >  1:1409323‑M2/42‑91 (MQ=255)

                                             taacgacaatttttagtgactcagttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAg                                           >  1:2846021‑M2/42‑91 (MQ=255)

                                             TAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAg                                           >  1:313117‑M1/1‑91 (MQ=255)

                                              aacgacactttttagtgactcagttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGc                                          >  1:2659851‑M2/41‑91 (MQ=255)

                                               acgacactttttagtgactcagttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGcc                                         >  1:1430786‑M2/40‑91 (MQ=255)

                                               ACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGcc                                         <  1:1352623‑M1/91‑1 (MQ=255)

                                               ACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGcc                                         <  1:2924189‑M1/91‑1 (MQ=255)

                                               ACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGcc                                         <  1:2985781‑M1/91‑1 (MQ=255)

                                               ACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGcc                                         <  1:1127698‑M1/91‑1 (MQ=255)

                                                CTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCg                                        <  1:590325‑M1/91‑1 (MQ=255)

                                                 tGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGc                                       <  1:2282936/91‑1 (MQ=255)

                                                 tGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGc                                       <  1:2271940/91‑1 (MQ=255)

                                                 tGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGc                                       >  1:1074060/1‑91 (MQ=255)

                                                   aGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCAc                                     <  1:4121730/91‑1 (MQ=255)

                                                   aGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCAc                                     <  1:1797220/91‑1 (MQ=255)

                                                     tCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCt                                   <  1:1024686/91‑1 (MQ=255)

                                                     tCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCt                                   <  1:221110/91‑1 (MQ=255)

                                                       aCTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGt                                 >  1:1527961/1‑91 (MQ=255)

                                                         tAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTaa                               >  1:2001882/1‑91 (MQ=255)

                                                           aaaaGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATc                             <  1:1257189/91‑1 (MQ=255)

                                                           aaaaGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATc                             <  1:1257180/91‑1 (MQ=255)

                                                           aaaaGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATc                             >  1:1465464/1‑91 (MQ=255)

                                                            aaaGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCa                            >  1:3517877/1‑91 (MQ=255)

                                                              aGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGt                          <  1:3261445/91‑1 (MQ=255)

                                                              aGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGt                          >  1:1353317/1‑91 (MQ=255)

                                                               gtgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTg                         <  1:4145449/91‑1 (MQ=255)

                                                               gtgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTg                         <  1:2177945/91‑1 (MQ=255)

                                                               gtgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTg                         <  1:2177289/91‑1 (MQ=255)

                                                                tgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGc                        <  1:3724484/91‑1 (MQ=255)

                                                                tgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGc                        >  1:3482356/1‑91 (MQ=255)

                                                                tgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGc                        <  1:617108/91‑1 (MQ=255)

                                                                tgtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGc                        <  1:617142/91‑1 (MQ=255)

                                                                 gtCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCa                       >  1:112920/1‑91 (MQ=255)

                                                                   cGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCaaa                     <  1:667251/91‑1 (MQ=255)

                                                                   cGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCaaa                     <  1:718248/91‑1 (MQ=255)

                                                                    gttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAt                    <  1:747995‑M2/73‑1 (MQ=255)

                                                                    gttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAt                    >  1:2562124‑M2/19‑91 (MQ=255)

                                                                    gttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAt                    >  1:2562333‑M2/19‑91 (MQ=255)

                                                                    gttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAt                    >  1:3089233‑M2/19‑91 (MQ=255)

                                                                     ttatattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAAtt                   <  1:829049‑M2/74‑1 (MQ=255)

                                                                       atattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCt                 <  1:627964‑M2/76‑1 (MQ=255)

                                                                       atattaaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCt                 <  1:628074‑M2/76‑1 (MQ=255)

                                                                           taaggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCa             <  1:240766‑M2/80‑1 (MQ=255)

                                                                             aggtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCACCTTCTTTCAAt           >  1:4121313‑M2/10‑91 (MQ=255)

                                                                               gtcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATgg         <  1:86693‑M2/84‑1 (MQ=255)

                                                                                tcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGt        >  1:969550‑M2/7‑91 (MQ=255)

                                                                                tcatttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGt        <  1:2789936‑M2/85‑1 (MQ=255)

                                                                                   tttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTcaatggattt     <  1:761951‑M2/88‑5 (MQ=255)

                                                                                   tttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTaaa     <  1:1866499‑M2/88‑1 (MQ=255)

                                                                                   tttCGTTAATTATGATTCTTTTTCGTTGTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTcaatggattt     <  1:1979084‑M2/88‑5 (MQ=255)

                                                                                    ttCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCATCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAAt    >  1:3502224‑M2/3‑91 (MQ=255)

                                                                                     tCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATc   <  1:2006569‑M2/90‑1 (MQ=255)

                                                                                     tCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATc   <  1:1742226‑M2/90‑1 (MQ=255)

                                                                                     tCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATc   <  1:1742067‑M2/90‑1 (MQ=255)

                                                                                     tCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATc   >  1:3609873‑M2/2‑91 (MQ=255)

                                                                                      cGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATcc  <  1:3915922/91‑1 (MQ=255)

CTTTAGTAGATCAACTTTTTCATTCAAATAAAAATGACCTTAATATAACTGAGTCACTAAAAAGTGTCGTTATATTAAGGTCATTTCGTTAATTATGATTCTTTTTCGTTTTTAGTACGTCTTCTAGCTAACAAAGCCGCACCTGTAATCAGTGCAAATTCTTTCAATGGTAAATCC  >  USA300TCH1516_ALE/1878566‑1878742

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.