New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2053744 =108 (1.100)16 (0.170) 9/150 NT 14.7% coding (1116/1296 nt) purB Adenylosuccinate lyase
?USA300TCH1516_ALE 2053767 = 85 (0.920)coding (1093/1296 nt) purB Adenylosuccinate lyase

Only 100 of 149 total aligned reads displayed.

GTTCGATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACAGT  >  USA300TCH1516_ALE/2053677‑2053857
                                                                                          |                                                                                          
gTTCGATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATAcc                                                                                            <  1:3498061/91‑1 (MQ=255)
gTTCGATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATAcc                                                                                            <  1:121805/91‑1 (MQ=255)
    gATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTtta                                                                                        >  1:2484085/1‑91 (MQ=255)
    gATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTtta                                                                                        <  1:535269/91‑1 (MQ=255)
    gATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTtta                                                                                        >  1:614422/1‑91 (MQ=255)
    acatagataaaacatttggtctgattttctcacaacgtgtcttattagcattaattaataaaggtatgcttcttcacgaaccatacCTtta                                                                                        <  1:523412‑M2/5‑1 (MQ=255)
    acatagataaaacatttggtctgattttctcacaacgtgtcttattagcattaattaataaaggtatgcttcttcacgaaccatacCTtta                                                                                        <  1:393133‑M2/5‑1 (MQ=255)
     aTTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTttat                                                                                       <  1:2995532/91‑1 (MQ=255)
     aTTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTttat                                                                                       <  1:223509/91‑1 (MQ=255)
         aTTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTattaat                                                                                   <  1:3570522/91‑1 (MQ=255)
           tCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTattaatta                                                                                 <  1:2785034/91‑1 (MQ=255)
            cACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTAttaattaa                                                                                <  1:3724139/91‑1 (MQ=255)
            cACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTAttaattaa                                                                                >  1:1953987/1‑91 (MQ=255)
            cACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTAttaattaa                                                                                >  1:1953533/1‑91 (MQ=255)
            cACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTAttaattaa                                                                                <  1:1790835/91‑1 (MQ=255)
              cGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATg                                                                              >  1:1395780/1‑91 (MQ=255)
                  aCGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCtaa                                                                          <  1:1899827/91‑1 (MQ=255)
                   cGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCtaat                                                                         >  1:3615721/1‑91 (MQ=255)
                   cGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCtaat                                                                         >  1:1073129/1‑91 (MQ=255)
                    ggTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCtaata                                                                        >  1:1016135/1‑91 (MQ=255)
                     gtgtTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCtaataa                                                                       >  1:2649843/1‑91 (MQ=255)
                     gtgtTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCtaataa                                                                       >  1:2198153/1‑91 (MQ=255)
                      gtctgattttctcacaacgtgtcttattagcattaattaataaagGTATGGTTCGTGAAGAAGCATACCTTTATTAATTAATGCTAATAAg                                                                      >  1:3768966‑M1/46‑91 (MQ=255)
                       gtTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGa                                                                     <  1:3244368/91‑1 (MQ=255)
                       gtTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGa                                                                     <  1:3244421/91‑1 (MQ=255)
                       gtTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGa                                                                     <  1:3245684/91‑1 (MQ=255)
                        ttttCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGac                                                                    <  1:1606185/91‑1 (MQ=255)
                            cGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGt                                                                >  1:1020541/1‑91 (MQ=255)
                             gTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGtt                                                               >  1:2550806/1‑91 (MQ=255)
                                 tcacaacgtgtcttattagcattaattaataaagGTATGGTTCGTGAAGAAGCATACCTTTATTAATTAATGCTAATAAGACACGTTGTga                                                           <  1:37579‑M1/57‑1 (MQ=255)
                                 cccAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTga                                                           >  1:1549417/1‑91 (MQ=255)
                                      gATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGaaaa                                                      >  1:3614548/1‑91 (MQ=255)
                                        tatCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATc                                                    <  1:2021388/91‑1 (MQ=255)
                                           catcGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGa                                                 <  1:764139/91‑1 (MQ=255)
                                            cttattagcattaattaataaaggtatgcttcttcacgaaccatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGAc                                                >  1:3768966‑M2/47‑91 (MQ=255)
                                            cttattagcattaattaataaaggtatgcttcttcacgaaccatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGAc                                                >  1:3769229‑M2/47‑91 (MQ=255)
                                            atcGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGAc                                                >  1:3552484/1‑91 (MQ=255)
                                            atcGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGAc                                                <  1:1082097/91‑1 (MQ=255)
                                            atcGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGAc                                                >  1:3119575/1‑91 (MQ=255)
                                            atcGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGAc                                                >  1:2536889/1‑91 (MQ=255)
                                              cGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCa                                              <  1:1512794/91‑1 (MQ=255)
                                               gCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCaa                                             <  1:1962273/91‑1 (MQ=255)
                                               gCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCaa                                             >  1:303429/1‑91 (MQ=255)
                                                cTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCaaa                                            <  1:1897008/91‑1 (MQ=255)
                                                  tttGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATg                                          <  1:4026827/91‑1 (MQ=255)
                                                  tttGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATg                                          >  1:2369632/1‑91 (MQ=255)
                                                  tttGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATg                                          >  1:2367656/1‑91 (MQ=255)
                                                   ttGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGt                                         <  1:3691934/91‑1 (MQ=255)
                                                     ggTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGttt                                       >  1:1108005/1‑91 (MQ=255)
                                                     ggTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGttt                                       >  1:1107976/1‑91 (MQ=255)
                                                     ggTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGttt                                       <  1:2870439/91‑1 (MQ=255)
                                                      gTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGtttt                                      >  1:1967835/1‑91 (MQ=255)
                                                       ttGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGGCCAAATGTTTTa                                     <  1:3186318/91‑1 (MQ=255)
                                                         gTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATc                                   >  1:911348/1‑91 (MQ=255)
                                                             tttGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATg                               <  1:3347535/91‑1 (MQ=255)
                                                              ttGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGt                              >  1:943742/1‑91 (MQ=255)
                                                              taaagGTATGGTTCGTGAAGAAGCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGt                              <  1:393133‑M1/86‑1 (MQ=255)
                                                              taaagGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGt                              >  1:1597112‑M1/6‑91 (MQ=255)
                                                                gTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGtta                            >  1:1881271/1‑91 (MQ=255)
                                                                gTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGtta                            >  1:1324115/1‑91 (MQ=255)
                                                                gTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGtta                            >  1:1323983/1‑91 (MQ=255)
                                                                gTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGtta                            >  1:2371913/1‑91 (MQ=255)
                                                                 agGTATGGTTCGTGAAGAAGCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGttat                           <  1:2694447‑M1/89‑1 (MQ=255)
                                                                    TATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTAc                        <  1:777758‑M1/91‑1 (MQ=255)
                                                                     ATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACg                       >  1:2010740‑M1/1‑91 (MQ=255)
                                                                     ATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACg                       <  1:4096866‑M1/91‑1 (MQ=255)
                                                                      TGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGc                      <  1:1474350‑M1/91‑1 (MQ=255)
                                                                      TGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGc                      <  1:4010881‑M1/91‑1 (MQ=255)
                                                                         ttcgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCata                   >  1:1910597‑M2/18‑91 (MQ=255)
                                                                          tcttcACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCatat                  >  1:887569/1‑91 (MQ=255)
                                                                          tcgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTGCGCatat                  >  1:2075334‑M2/17‑91 (MQ=255)
                                                                          tcgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCatat                  >  1:4041235‑M2/17‑91 (MQ=255)
                                                                          tcgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCatat                  >  1:922400‑M2/17‑91 (MQ=255)
                                                                          tcgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCatat                  >  1:2760971‑M2/17‑91 (MQ=255)
                                                                           cttcACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCAtatt                 <  1:3266244/91‑1 (MQ=255)
                                                                           cgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCAtatt                 >  1:671959‑M2/16‑91 (MQ=255)
                                                                           cgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCAtatt                 >  1:671917‑M2/16‑91 (MQ=255)
                                                                           cgtgaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCAtatt                 >  1:1679189‑M2/16‑91 (MQ=255)
                                                                            ttcACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCAtatta                >  1:3106293/1‑91 (MQ=255)
                                                                              gaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATc              >  1:559880‑M2/13‑91 (MQ=255)
                                                                              gaagaagcatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATc              >  1:424537‑M2/13‑91 (MQ=255)
                                                                              cACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATc              >  1:1148956/1‑91 (MQ=255)
                                                                              cACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATGACGCATATTATc              <  1:3176051/91‑1 (MQ=255)
                                                                               aCGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCt             <  1:2673765/91‑1 (MQ=255)
                                                                                cGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCtt            <  1:1660983/91‑1 (MQ=255)
                                                                                 gAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTc           >  1:338957/1‑91 (MQ=255)
                                                                                 gAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTc           >  1:1618280/1‑91 (MQ=255)
                                                                                  aacgatacCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCa          <  1:3342215‑M2/83‑1 (MQ=255)
                                                                                  aaCCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCa          >  1:1019734/1‑91 (MQ=255)
                                                                                  aaCCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCa          >  1:2602213/1‑91 (MQ=255)
                                                                                    ccATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCaaa        >  1:378816/1‑91 (MQ=255)
                                                                                    ccATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCaaa        >  1:377722/1‑91 (MQ=255)
                                                                                    ccATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCaaa        >  1:2918898/1‑91 (MQ=255)
                                                                                        acCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACa    >  1:379757‑M2/3‑91 (MQ=255)
                                                                                        acCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACa    >  1:1789921‑M2/3‑91 (MQ=255)
                                                                                        acCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAAACAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACa    >  1:3595376‑M2/3‑91 (MQ=255)
                                                                                         cCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACAg   <  1:1508‑M2/90‑1 (MQ=255)
                                                                                          cTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACAGt  >  1:512412/1‑91 (MQ=255)
                                                                                          cTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACAGt  <  1:3256970/91‑1 (MQ=255)
                                                                                          cTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACAGt  >  1:2062875/1‑91 (MQ=255)
                                                                                          |                                                                                          
GTTCGATTAATTCACGGAACGGTGTTTTCGTTTCCCAAGATATCATCGCTTTTGGTTGTACTTTGTCGTATGCTTCTTCACGAACCATACCTTTATTAATTAATGCTAATAAGACACGTTGTGAGAAAATCAGACCAAATGTTTTATCTATGTTATTACGCATATTATCTTCAAATACAGT  >  USA300TCH1516_ALE/2053677‑2053857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.