BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2082639 =	116 (1.180)	10 (0.110)	9/148	NT	8.7%	intergenic (+280/+44)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein
*	?	USA300TCH1516_ALE	2082667 =	102 (1.120)	10 (0.110)	9/148	NT	8.7%	intergenic (+308/+16)	aspC/USA300HOU_RS10520	Aspartate aminotransferase/65 kDa membrane protein

Only 100 of 157 total aligned reads displayed.

AATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTT  >  USA300TCH1516_ALE/2082577‑2082757

aaTTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCtta                                                                                            >  1:2033326/1‑91 (MQ=255)

 aTTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttat                                                                                           >  1:1119899/1‑91 (MQ=255)

  tttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttatt                                                                                          >  1:1854920/1‑91 (MQ=255)

   ttATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCttatta                                                                                         >  1:3657089/1‑91 (MQ=255)

   agcaactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcaccccacgattgtgagatgccttatta                                                                                         <  1:1871386‑M2/4‑1 (MQ=255)

    tatataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTtattat                                                                                        <  1:1245632/91‑1 (MQ=255)

     atataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATtata                                                                                       >  1:3605560/1‑91 (MQ=255)

      tataACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATaa                                                                                      <  1:3999372/91‑1 (MQ=255)

      aactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcaccccacgattgtgagatgccttATTATaa                                                                                      <  1:447637‑M2/7‑1 (MQ=255)

      aactgacattaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcaccccacgattgtgagatgccttATTATaa                                                                                      <  1:447545‑M2/7‑1 (MQ=255)

         aaCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAt                                                                                   >  1:449515/1‑91 (MQ=255)

          aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                                                  >  1:2208669/1‑91 (MQ=255)

          aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                                                  >  1:2207147/1‑91 (MQ=255)

          aCTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAAtt                                                                                  >  1:2206731/1‑91 (MQ=255)

           cTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTa                                                                                 >  1:805450/1‑91 (MQ=255)

            ttttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTaa                                                                                >  1:2027063/1‑91 (MQ=255)

             attaaaaaggtagatattgaacttaaattctaatctttaattttataataaggcaccccacgattgtgagatgccttATTATAAAATTaaa                                                                               <  1:3798903‑M2/14‑1 (MQ=255)

              ttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAg                                                                              <  1:135607/91‑1 (MQ=255)

              ttGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAg                                                                              >  1:2339040/1‑91 (MQ=255)

                ggCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAt                                                                            >  1:1895593/1‑91 (MQ=255)

                ggCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAt                                                                            >  1:1895572/1‑91 (MQ=255)

                 gCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                           <  1:1044123/91‑1 (MQ=255)

                 gCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGAtt                                                                           <  1:2504913/91‑1 (MQ=255)

                  cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTa                                                                          <  1:3467387/91‑1 (MQ=255)

                  cAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTa                                                                          <  1:1402107/91‑1 (MQ=255)

                    aaTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGa                                                                        >  1:3426542/1‑91 (MQ=255)

                    aaTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGa                                                                        <  1:3029687/91‑1 (MQ=255)

                    aaTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGa                                                                        <  1:3029756/91‑1 (MQ=255)

                     aTCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGaa                                                                       >  1:326187/1‑91 (MQ=255)

                      tCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAAt                                                                      >  1:3072944/1‑91 (MQ=255)

                           tCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAg                                                                 >  1:1828238/1‑91 (MQ=255)

                            cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                >  1:888862/1‑91 (MQ=255)

                            cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                <  1:1270286/91‑1 (MQ=255)

                            cAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGt                                                                <  1:1270236/91‑1 (MQ=255)

                             aaaCATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGtt                                                               >  1:2867573/1‑91 (MQ=255)

                                 aTTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAat                                                           >  1:3107561/1‑91 (MQ=255)

                                 aTTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAat                                                           >  1:3698079/1‑91 (MQ=255)

                                   tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAatat                                                         <  1:220865/91‑1 (MQ=255)

                                   tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAatat                                                         >  1:1440938/1‑91 (MQ=255)

                                   tCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAatat                                                         <  1:1251324/91‑1 (MQ=255)

                                     aaGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCt                                                       >  1:2783896/1‑91 (MQ=255)

                                      aGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTa                                                      >  1:2951019/1‑91 (MQ=255)

                                       gCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAc                                                     >  1:529649/1‑91 (MQ=255)

                                       gCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTAc                                                     <  1:2481/91‑1 (MQ=255)

                                         aTCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCt                                                   <  1:588170/91‑1 (MQ=255)

                                           cacaTCTCTACAAGTGTAAAAGGCACCCCACGATTGTGAGATGTCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttt                                                 <  1:4148572/91‑1 (MQ=255)

                                           cacaTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGTCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttt                                                 <  1:4148118/91‑1 (MQ=255)

                                             caTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttttt                                               >  1:2094182/1‑91 (MQ=255)

                                              aTCTCTACAGATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTa                                              <  1:3963305/91‑1 (MQ=255)

                                              aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCttatta                                              >  1:3266471/1‑91 (MQ=255)

                                              aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTa                                              >  1:408125/1‑91 (MQ=255)

                                              aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTa                                              >  1:799220/1‑91 (MQ=255)

                                              aTCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTa                                              <  1:2928798/91‑1 (MQ=255)

                                               tctcTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTaa                                             >  1:496794/1‑91 (MQ=255)

                                                ctctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAAt                                            >  1:3770072/1‑91 (MQ=255)

                                                 tctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATg                                           >  1:524560/1‑91 (MQ=255)

                                                  ctACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGt                                          <  1:1897324/91‑1 (MQ=255)

                                                   tACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTc                                         <  1:2866409/91‑1 (MQ=255)

                                                     cAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAg                                       <  1:710212/91‑1 (MQ=255)

                                                     cAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAg                                       <  1:3457601/91‑1 (MQ=255)

                                                       aaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGtt                                     >  1:710755/1‑91 (MQ=255)

                                                       aaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGtt                                     >  1:2795177/1‑91 (MQ=255)

                                                       aaTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGtt                                     >  1:2794335/1‑91 (MQ=255)

                                                        aTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTg                                    <  1:2572843/91‑1 (MQ=255)

                                                        aTGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTg                                    <  1:3932917/91‑1 (MQ=255)

                                                          taatAAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                  <  1:497558‑M1/87‑1 (MQ=255)

                                                          gTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCt                                  <  1:3420988/91‑1 (MQ=255)

                                                           tAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCtt                                 <  1:1528485/91‑1 (MQ=255)

                                                            aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCttt                                >  1:675337/1‑91 (MQ=255)

                                                            aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCttt                                <  1:1050494/91‑1 (MQ=255)

                                                            aaaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCttt                                <  1:2631662/91‑1 (MQ=255)

                                                             aaaGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTa                               <  1:1118834/91‑1 (MQ=255)

                                                              AAGGCATCTCACAATCGTGGGGTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaa                              <  1:2674183‑M1/91‑1 (MQ=255)

                                                               AGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTaaa                             <  1:3911947‑M1/91‑1 (MQ=255)

                                                                 gcatctcacaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATa                           >  1:2962597‑M2/26‑91 (MQ=255)

                                                                 gcatctcacaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATa                           >  1:2962774‑M2/26‑91 (MQ=255)

                                                                 GCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATa                           <  1:4069699‑M1/91‑1 (MQ=255)

                                                                  CACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATAc                          <  1:1681364‑M1/91‑1 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCGATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        >  1:2047897/1‑91 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        >  1:1520824/1‑91 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        <  1:3054067/91‑1 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        <  1:3056770/91‑1 (MQ=255)

                                                                    ccccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActc                        >  1:1718963/1‑91 (MQ=255)

                                                                     cccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATActct                       >  1:1982754/1‑91 (MQ=255)

                                                                      tcacaatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCtt                      >  1:1928815‑M2/21‑91 (MQ=255)

                                                                      ccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCtt                      <  1:3732306/91‑1 (MQ=255)

                                                                      ccACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCtt                      >  1:3892413/1‑91 (MQ=255)

                                                                         caatcgtggggtgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCa                   >  1:1307640‑M2/18‑91 (MQ=255)

                                                                              gtgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATCTCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCttt              >  1:3292327/1‑91 (MQ=255)

                                                                               tgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTta             >  1:2917722/1‑91 (MQ=255)

                                                                               tgAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTta             >  1:167867/1‑91 (MQ=255)

                                                                                  gaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAc          <  1:1772082/91‑1 (MQ=255)

                                                                                  gaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAc          <  1:663410/91‑1 (MQ=255)

                                                                                  gaTGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATAc          <  1:3123047/91‑1 (MQ=255)

                                                                                    tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc        <  1:1415500‑M2/85‑1 (MQ=255)

                                                                                    tgccttATTATAAAATTAAAGATTAGAATTTAAGTTCAATATATACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTc        <  1:1664596‑M2/85‑1 (MQ=255)

                                                                                     gccgtATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCGTCTTTATACTCa       <  1:3205220‑M2/86‑1 (MQ=255)

                                                                                     gccgtATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCGTCTTTATACTCa       <  1:3208286‑M2/86‑1 (MQ=255)

                                                                                         tATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGttt   <  1:2574129‑M2/90‑1 (MQ=255)

                                                                                          attatAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGtttt  >  1:3804562/1‑91 (MQ=255)

AATTTATATAACTTTTGGCAAATCACTTCAAACATTCAAGCATCACATCTCTACAAATGTAAAAGGCACCCCACGATTGTGAGATGCCTTATTATAAAATTAAAGATTAGAATTTAAGTTCAATATCTACCTTTTTAATGTCAGTTGCTTTAAATACTCTTTCATCTTTATACTCAGTTTT  >  USA300TCH1516_ALE/2082577‑2082757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.