BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2090954	100 (1.020)	8 (0.090)	6/142	NT	7.9%	intergenic (‑188/+350)	USA300HOU_RS10575/USA300HOU_RS10590	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	= 2090971	99 (1.130)	8 (0.090)	6/142	NT	7.9%	intergenic (‑205/+333)	USA300HOU_RS10575/USA300HOU_RS10590	hypothetical protein/hypothetical protein

Only 100 of 144 total aligned reads displayed.

ACCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACT  >  USA300TCH1516_ALE/2090882‑2091061

aCCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGc                                                                                           <  1:277995‑M2/91‑2 (MQ=255)

   cTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgat                                                                                        >  1:1598466‑M2/1‑87 (MQ=255)

     aaTGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatgg                                                                                      >  1:2653007‑M2/1‑85 (MQ=255)

      aTGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggt                                                                                     >  1:1590565‑M2/1‑84 (MQ=255)

       tGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtt                                                                                    <  1:2464638‑M2/91‑9 (MQ=255)

        gAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtta                                                                                   >  1:4017689‑M2/1‑82 (MQ=255)

        gAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGcgatggtta                                                                                   >  1:2858686‑M2/1‑82 (MQ=255)

         aGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAt                                                                                  <  1:1149771/91‑1 (MQ=255)

          gCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAtt                                                                                 >  1:1786735/1‑91 (MQ=255)

           cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                <  1:608342/91‑1 (MQ=255)

           cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                >  1:3681295/1‑91 (MQ=255)

           cccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAttt                                                                                >  1:3446401/1‑91 (MQ=255)

            ccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAtttt                                                                               <  1:555832/91‑1 (MQ=255)

            ccGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTAtttt                                                                               <  1:1641693/91‑1 (MQ=255)

               ttAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTa                                                                            >  1:2217980/1‑91 (MQ=255)

                   aaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGc                                                                        <  1:2831626/91‑1 (MQ=255)

                   aaaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGc                                                                        >  1:4131215/1‑91 (MQ=255)

                    aaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCt                                                                       <  1:2578607/91‑1 (MQ=255)

                    aaGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCt                                                                       <  1:2972182/91‑1 (MQ=255)

                     aGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCtt                                                                      <  1:1864745/91‑1 (MQ=255)

                      gACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTa                                                                     >  1:1188177/1‑91 (MQ=255)

                        cGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAt                                                                   <  1:989049/91‑1 (MQ=255)

                         ggTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAAtt                                                                  <  1:1687811/91‑1 (MQ=255)

                          gTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTc                                                                 <  1:980526/91‑1 (MQ=255)

                          gTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATAGAAACCAGCCAAAGTTAGCGATGGTTATTTCTTATTGCTTAATTc                                                                 >  1:717927/1‑91 (MQ=255)

                           tGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCa                                                                >  1:1979957/1‑91 (MQ=255)

                           tGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCa                                                                >  1:4150280/1‑91 (MQ=255)

                            ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                               <  1:1969221/91‑1 (MQ=255)

                            ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                               >  1:1104707/1‑91 (MQ=255)

                            ggCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                               >  1:1104865/1‑91 (MQ=255)

                            ggCTATTTTAGATCAAAGATTAAATTAATAACCATTTAACCATAGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCaa                                                               <  1:4150716/91‑1 (MQ=255)

                             gCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAAt                                                              >  1:2856958/1‑91 (MQ=255)

                              cTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATa                                                             >  1:3473073/1‑91 (MQ=255)

                                aTTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAg                                                           <  1:3950314/91‑1 (MQ=255)

                                 ttttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCTAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGc                                                          <  1:3590001/91‑1 (MQ=255)

                                 ttttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCTAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGc                                                          <  1:3590094/91‑1 (MQ=255)

                                 ttttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTATCGATGGTTATTTTTTATTGCTTAATTCAATAAGc                                                          <  1:2057918/91‑1 (MQ=255)

                                 ttttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGc                                                          <  1:2058095/91‑1 (MQ=255)

                                  tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCt                                                         <  1:2900078/91‑1 (MQ=255)

                                  tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCt                                                         <  1:2446186/91‑1 (MQ=255)

                                  tttAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCt                                                         <  1:369210/91‑1 (MQ=255)

                                     agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                      <  1:2974346/91‑1 (MQ=255)

                                     agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                      <  1:2502972/91‑1 (MQ=255)

                                     agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                      <  1:2848036/91‑1 (MQ=255)

                                     agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                      <  1:1216092/91‑1 (MQ=255)

                                     agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                      >  1:1667416/1‑91 (MQ=255)

                                     agattaaagattaaATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGa                                                      <  1:445314/91‑1 (MQ=255)

                                       attaaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGAtt                                                    <  1:3891122/91‑1 (MQ=255)

                                         taaagattaaaTTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTAc                                                  <  1:650939/91‑1 (MQ=255)

                                              attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAc                                             <  1:1216915/91‑1 (MQ=255)

                                              attaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATCGCTTAATTCAATAAGCTTGATTACTAGAc                                             <  1:70497/91‑1 (MQ=255)

                                               ttaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                            <  1:391049/91‑1 (MQ=255)

                                               ttaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                            <  1:3553670/91‑1 (MQ=255)

                                               ttaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                            <  1:1861316/91‑1 (MQ=255)

                                               ttaaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGAcc                                            <  1:2823431/91‑1 (MQ=255)

                                                taaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCt                                           >  1:3136767/1‑91 (MQ=255)

                                                 aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTa                                          <  1:227219/91‑1 (MQ=255)

                                                 aaattaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTa                                          >  1:1343989/1‑91 (MQ=255)

                                                   attaaTAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATc                                        <  1:1372673/91‑1 (MQ=255)

                                                      aataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAAt                                     <  1:3141071/91‑1 (MQ=255)

                                                       ataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTATACCTATCAATg                                    >  1:3768491/1‑91 (MQ=255)

                                                       ataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATg                                    >  1:2916446/1‑91 (MQ=255)

                                                       ataaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATg                                    <  1:568780/91‑1 (MQ=255)

                                                         aaCCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCa                                  <  1:2367781/91‑1 (MQ=255)

                                                           ccATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAAt                                <  1:2313680/91‑1 (MQ=255)

                                                           ccATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAAt                                <  1:3083266/91‑1 (MQ=255)

                                                           ccATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAAt                                >  1:1699767/1‑91 (MQ=255)

                                                            cATTTAACCCTCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATa                               <  1:3978426/91‑1 (MQ=255)

                                                               ttAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAgg                            >  1:681220/1‑91 (MQ=255)

                                                                    cATCGAAACTAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATaa                       <  1:3963808/91‑1 (MQ=255)

                                                                    cATCGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcatta                       <  1:837358‑M2/91‑70 (MQ=255)

                                                                     aTCGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattag                      <  1:3130778‑M2/91‑71 (MQ=255)

                                                                     aTCGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattag                      <  1:2550295‑M2/91‑71 (MQ=255)

                                                                     aTCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATaaa                      <  1:3233415/91‑1 (MQ=255)

                                                                      tCGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattagg                     <  1:137032‑M2/91‑72 (MQ=255)

                                                                       cGAAACCAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattaggg                    <  1:223641‑M2/91‑73 (MQ=255)

                                                                       cGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAAcc                    <  1:1308847/91‑1 (MQ=255)

                                                                          aaCCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGGATAAACCaaa                 <  1:1477586/91‑1 (MQ=255)

                                                                          aaCCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCaaa                 >  1:2467393/1‑91 (MQ=255)

                                                                           aCCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAAc                <  1:1521415/91‑1 (MQ=255)

                                                                            ccAGCCAAAGTTAGcgatggttaaatggttattaatttaatctttaatctaaaatagccaccgtctttttaacgggctcattagggtaaca               <  1:3041705‑M2/91‑78 (MQ=255)

                                                                            ccAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACt               >  1:1625013/1‑91 (MQ=255)

                                                                             cAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATACACCAAACTg              >  1:3982402/1‑91 (MQ=255)

                                                                             cAGCAAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTg              >  1:3275019/1‑91 (MQ=255)

                                                                               gCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCa            >  1:740671/1‑91 (MQ=255)

                                                                               gCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCa            >  1:738848/1‑91 (MQ=255)

                                                                                ccAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCaa           >  1:2298514/1‑91 (MQ=255)

                                                                                  aaaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACa         >  1:2656698/1‑91 (MQ=255)

                                                                                  aaaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACa         >  1:2657255/1‑91 (MQ=255)

                                                                                  aaaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACa         <  1:873163/91‑1 (MQ=255)

                                                                                   aaGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACAt        >  1:2144989/1‑91 (MQ=255)

                                                                                     gTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATgg      >  1:459121/1‑91 (MQ=255)

                                                                                      ttAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGt     >  1:1495497/1‑91 (MQ=255)

                                                                                      ttAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGt     <  1:2703758/91‑1 (MQ=255)

                                                                                       tAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTa    <  1:3275401/91‑1 (MQ=255)

                                                                                       tAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTa    <  1:2821653/91‑1 (MQ=255)

                                                                                        aGCTATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc   <  1:3217898/91‑1 (MQ=255)

                                                                                        aGCGATGGTTATTTTTTGTTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTAc   <  1:3559006/91‑1 (MQ=255)

                                                                                        aGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGAAATAAGGAATAAACCAAACTGCAACATGGTAc   >  1:3540035/1‑91 (MQ=255)

                                                                                         gCGATGGTTATTTTGTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACt  <  1:3743043/91‑1 (MQ=255)

ACCCTAATGAGCCCGTTAAAAAGACGGTGGCTATTTTAGATTAAAGATTAAATTAATAACCATTTAACCATCGAAACCAGCCAAAGTTAGCGATGGTTATTTTTTATTGCTTAATTCAATAAGCTTGATTACTAGACCTATCAATGCAATAAGGAATAAACCAAACTGCAACATGGTACT  >  USA300TCH1516_ALE/2090882‑2091061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.