BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2150647 =	105 (1.070)	14 (0.170)	8/136	NT	13.6%	intergenic (+310/+57)	agrA/scrK	Accessory gene regulator A/Fructokinase
*	?	USA300TCH1516_ALE	2150691 =	89 (1.060)	14 (0.170)	8/136	NT	13.6%	intergenic (+354/+13)	agrA/scrK	Accessory gene regulator A/Fructokinase

Only 100 of 152 total aligned reads displayed.

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

ataaaATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTta                                                                                            <  1:2718692/91‑1 (MQ=255)

   acattacaagaggttgaacaagcattttaaataattcatttaaAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaa                                                                                         >  1:3228892‑M1/44‑91 (MQ=255)

   aaaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaa                                                                                         <  1:3815894/91‑1 (MQ=255)

    cattacaagaggttgaacaagcattttaaataattcatttaaAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaaa                                                                                        >  1:2647965‑M1/43‑91 (MQ=255)

    aaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaaa                                                                                        >  1:1947682/1‑91 (MQ=255)

    aaTGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATaaa                                                                                        <  1:3565266/91‑1 (MQ=255)

       gCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGa                                                                                     >  1:1538411/1‑91 (MQ=255)

       gCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGa                                                                                     <  1:493848/91‑1 (MQ=255)

        cTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGaa                                                                                    <  1:1061531/91‑1 (MQ=255)

         tataATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAat                                                                                   <  1:1779740/91‑1 (MQ=255)

         tataATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAat                                                                                   >  1:105901/1‑91 (MQ=255)

         tataATTTCCTACTCCGTGAATCTTATGTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAat                                                                                   <  1:1779843/91‑1 (MQ=255)

           taATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAatta                                                                                 >  1:1161184/1‑91 (MQ=255)

            aaTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattat                                                                                <  1:3222214/91‑1 (MQ=255)

            aaTTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAattat                                                                                >  1:105081/1‑91 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  1:3044881/91‑1 (MQ=255)

              tttCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTAttt                                                                              <  1:3570086/91‑1 (MQ=255)

                  cTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaaaa                                                                          >  1:2912856/1‑91 (MQ=255)

                  cTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTaaaa                                                                          <  1:2678389/91‑1 (MQ=255)

                   tactacGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGAGTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAAt                                                                         >  1:3283152/1‑91 (MQ=255)

                     cTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGc                                                                       >  1:1029468/1‑91 (MQ=255)

                      tCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCt                                                                      >  1:452359/1‑91 (MQ=255)

                       ccGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCtt                                                                     <  1:1840285/91‑1 (MQ=255)

                        cGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTg                                                                    <  1:117797/91‑1 (MQ=255)

                        cGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTg                                                                    <  1:615647/91‑1 (MQ=255)

                         gTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGt                                                                   <  1:1908990/91‑1 (MQ=255)

                         gTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGt                                                                   <  1:1909140/91‑1 (MQ=255)

                          tGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGtt                                                                  <  1:103714/91‑1 (MQ=255)

                           taaTCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTc                                                                 <  1:3091383/90‑1 (MQ=255)

                            aaTCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCa                                                                >  1:3463799/1‑91 (MQ=255)

                            aaTCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCa                                                                <  1:1699468/91‑1 (MQ=255)

                                ttATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACct                                                            >  1:2766928/1‑91 (MQ=255)

                                ttATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACct                                                            >  1:3587778/1‑91 (MQ=255)

                                ttATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACct                                                            <  1:988260/91‑1 (MQ=255)

                                 tATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctc                                                           >  1:2918358/1‑91 (MQ=255)

                                  aTTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACctct                                                          >  1:1440931/1‑91 (MQ=255)

                                   ttttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCtt                                                         <  1:1879650/91‑1 (MQ=255)

                                   ttttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCtt                                                         >  1:3164435/1‑91 (MQ=255)

                                    tttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTg                                                        <  1:2480279/91‑1 (MQ=255)

                                     ttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGt                                                       >  1:4011769/1‑91 (MQ=255)

                                     ttGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGt                                                       <  1:3893532/91‑1 (MQ=255)

                                       gTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTaa                                                     >  1:1758648/1‑91 (MQ=255)

                                       gTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTaa                                                     >  1:2837018/1‑91 (MQ=255)

                                        ttttAAAAGACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAAt                                                    <  1:1200082/91‑1 (MQ=255)

                                         tttataaaacagtgtaggaaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATg                                                   >  1:2647965‑M2/50‑91 (MQ=255)

                                         tttataaaacagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATg                                                   >  1:485892‑M2/50‑91 (MQ=255)

                                         tttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATg                                                   <  1:2567649/91‑1 (MQ=255)

                                          ttAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGt                                                  <  1:1055845/91‑1 (MQ=255)

                                            aaaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTg                                                >  1:2487431/1‑91 (MQ=255)

                                            aaaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTg                                                >  1:2976196/1‑91 (MQ=255)

                                             aaaaaCAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTgg                                               <  1:2477759/91‑1 (MQ=255)

                                              aaaacagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGc                                              >  1:4044912‑M2/45‑91 (MQ=255)

                                               AAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCa                                             >  1:211324‑M1/1‑91 (MQ=255)

                                                AACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaa                                            >  1:3722994‑M1/1‑91 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           <  1:3665459‑M1/91‑1 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           <  1:2433836‑M1/91‑1 (MQ=255)

                                                 ACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCaaa                                           >  1:2094608‑M1/1‑91 (MQ=255)

                                                  cagtgtaggaaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:1266867‑M2/41‑91 (MQ=255)

                                                  cagtgtaggaaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:479280‑M2/41‑91 (MQ=255)

                                                  cagtgtaggaaacaagttgaatcttgtgctacactgttttTTAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:479307‑M2/41‑91 (MQ=255)

                                                  cagtgtaggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          >  1:120077‑M2/41‑91 (MQ=255)

                                                  CAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAAc                                          <  1:2900476‑M1/91‑1 (MQ=255)

                                                       TAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTa                                     <  1:1437592‑M1/91‑1 (MQ=255)

                                                         ggaaacaagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAAt                                   >  1:913474‑M2/34‑91 (MQ=255)

                                                           acaAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAg                                 >  1:4077446/1‑91 (MQ=255)

                                                             aaGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCa                               <  1:822893/91‑1 (MQ=255)

                                                              caagttgaatcttgtgctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCAc                              >  1:3900382‑M2/29‑91 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATATATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  1:3330149/91‑1 (MQ=255)

                                                                aTTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCa                            <  1:2329206/91‑1 (MQ=255)

                                                                   cAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATAc                         >  1:782176/1‑91 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  1:3236933/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        >  1:2445186/1‑91 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  1:2133961/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  1:1223584/91‑1 (MQ=255)

                                                                    aaCTTGTTTCCGACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACt                        <  1:3758580/91‑1 (MQ=255)

                                                                     aCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACtt                       >  1:278849/1‑91 (MQ=255)

                                                                     aCTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACtt                       >  1:3966841/1‑91 (MQ=255)

                                                                      cTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTc                      >  1:2814069/1‑91 (MQ=255)

                                                                        tGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGt                    <  1:3668697/91‑1 (MQ=255)

                                                                        tGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGt                    <  1:3668645/91‑1 (MQ=255)

                                                                        tGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGt                    >  1:380788/1‑91 (MQ=255)

                                                                           ttCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGt                 <  1:799808/91‑1 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                <  1:3641447/91‑1 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                <  1:1756135/91‑1 (MQ=255)

                                                                            tCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTc                <  1:3444543/91‑1 (MQ=255)

                                                                              ctacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCAc              <  1:3388308‑M2/79‑1 (MQ=255)

                                                                               tacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACt             >  1:1958319‑M2/12‑91 (MQ=255)

                                                                               tacactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACt             >  1:1958142‑M2/12‑91 (MQ=255)

                                                                                acactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTa            >  1:2963973‑M2/11‑91 (MQ=255)

                                                                                acactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTa            <  1:643093‑M2/81‑1 (MQ=255)

                                                                                acactgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTa            >  1:2354195‑M2/11‑91 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         >  1:3119634‑M2/8‑91 (MQ=255)

                                                                                   ctgttttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTg         <  1:2066242‑M2/84‑1 (MQ=255)

                                                                                       tttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagc     >  1:2906925‑M2/4‑91 (MQ=255)

                                                                                       tttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagc     >  1:2907071‑M2/4‑91 (MQ=255)

                                                                                       tttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagc     <  1:2534864‑M2/88‑1 (MQ=255)

                                                                                        ttATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTgcagca    >  1:2425761‑M2/3‑91 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  >  1:447531/1‑91 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  <  1:3656275/91‑1 (MQ=255)

                                                                                          ataAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAc  <  1:3656501/91‑1 (MQ=255)

ATAAAATGCTATAATTTCCTACTCCGTGAATCTTATTTTGTTTTAAAAAACAGTGTAGCACAAGATTCAACTTGTTTCCTACACTGTTTTATAAATGAATTATTTAAAATGCTTGTTCAACCTCTTGTAATGTTGGCAAACTATTAATAGCACCATACTTCGTTGTCACTATTGCAGCAAC  >  USA300TCH1516_ALE/2150601‑2150781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.