BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2218228	63 (0.640)	14 (0.180)	9/124	NT	19.5%	intergenic (+21/+38)	USA300HOU_RS11330/fabZ	hypothetical protein/3‑hydroxyacyl‑[acyl‑carrier‑protein] dehydratase FabZ
*	?	USA300TCH1516_ALE	= 2218242	67 (0.880)	14 (0.180)	9/124	NT	19.5%	intergenic (+35/+24)	USA300HOU_RS11330/fabZ	hypothetical protein/3‑hydroxyacyl‑[acyl‑carrier‑protein] dehydratase FabZ

Only 100 of 137 total aligned reads displayed.

TTAATCGAATGATGCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCT  >  USA300TCH1516_ALE/2218152‑2218332

   aTCGAATGATGCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaat                                                                                           <  1:2145599‑M2/91‑4 (MQ=255)

   aTCGAATGATGCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaat                                                                                           <  1:2145692‑M2/91‑4 (MQ=255)

     cGAATGATGCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatct                                                                                         >  1:1249835‑M2/1‑86 (MQ=255)

        atgatgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttg                                                                                      <  1:384029‑M2/91‑9 (MQ=255)

        atgatgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttg                                                                                      >  1:1740489‑M2/1‑83 (MQ=255)

         tgatgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttga                                                                                     >  1:394438‑M2/1‑82 (MQ=255)

         tgatgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttga                                                                                     <  1:2737733‑M2/91‑10 (MQ=255)

         tgatgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttga                                                                                     >  1:252941‑M2/1‑82 (MQ=255)

          gatgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttgaa                                                                                    >  1:4084720‑M2/1‑81 (MQ=255)

          cttgtagttgtgaacttacatttgcaattcaagatgtaaaataaaacaaAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGaa                                                                                    >  1:606301‑M1/50‑91 (MQ=255)

           atgCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttgaat                                                                                   >  1:2485771‑M2/1‑80 (MQ=255)

             gCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttgaatgt                                                                                 <  1:2536868‑M2/91‑14 (MQ=255)

              tagttgtgaacttacatttgcaattcaagatgtaaaataaaacaaAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑tt                                                                               >  1:1181478‑M1/46‑91 (MQ=255)

              tagttgtgaacttacatttgcaattcaagatgtaaaataaaacaaAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑tt                                                                               >  1:3878666‑M1/46‑91 (MQ=255)

              cAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttgaatgtt                                                                                <  1:4149654‑M2/91‑15 (MQ=255)

              cAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttgaatgtt                                                                                >  1:632936‑M2/1‑77 (MQ=255)

              cAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTACGCCAACACATTAaatctttgaatgtt                                                                                >  1:1096513‑M2/1‑77 (MQ=255)

               agttgtgaacttacatttgcaattcaagatgtaaaataaaacaaAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑ttt                                                                              >  1:664383‑M1/45‑91 (MQ=255)

                    aaaCCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑tttttttt                                                                         <  1:2928218/91‑1 (MQ=255)

                    aaaCCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑tttttttt                                                                         <  1:1929342/91‑1 (MQ=255)

                     aaCCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑g                                                                       >  1:2690201/1‑91 (MQ=255)

                     aaCCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑g                                                                       <  1:1196149/91‑1 (MQ=255)

                      aCCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gt                                                                      <  1:2798184/91‑1 (MQ=255)

                        cAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gttt                                                                    >  1:10896/1‑91 (MQ=255)

                        cAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gttt                                                                    <  1:137320/91‑1 (MQ=255)

                        cAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTC‑Gttt                                                                    <  1:2771309/91‑1 (MQ=255)

                         aaaGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gtttt                                                                   <  1:784389/91‑1 (MQ=255)

                          aaGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gtttta                                                                  <  1:4074571/91‑1 (MQ=255)

                             ttAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gttttattt                                                               <  1:2781713/91‑1 (MQ=255)

                             ttAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gttttattt                                                               <  1:2781949/91‑1 (MQ=255)

                               aaaGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑Gttttatttta                                                             >  1:3681011/1‑91 (MQ=255)

                                aaGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTAc                                                            <  1:205845/91‑1 (MQ=255)

                                aaGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTAc                                                            >  1:2490068/1‑91 (MQ=255)

                                aaGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTAc                                                            >  1:3776728/1‑91 (MQ=255)

                                 aGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACa                                                           >  1:1330652/1‑91 (MQ=255)

                                 aGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACa                                                           >  1:1111216/1‑91 (MQ=255)

                                 aGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACa                                                           <  1:3481325/91‑1 (MQ=255)

                                  ggATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACAt                                                          >  1:791359/1‑91 (MQ=255)

                                  ggATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTCTT‑GTTTTATTTTACAt                                                          >  1:790310/1‑91 (MQ=255)

                                   gATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATc                                                         >  1:3924294/1‑91 (MQ=255)

                                    aTGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCt                                                        <  1:3069990/91‑1 (MQ=255)

                                    aTGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCt                                                        >  1:277658/1‑91 (MQ=255)

                                      gAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTg                                                      <  1:2057441/91‑1 (MQ=255)

                                       aaaaaTTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGa                                                     <  1:1459854/91‑1 (MQ=255)

                                         aaaTTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAAt                                                   <  1:3362248/91‑1 (MQ=255)

                                         aaaTTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAAt                                                   <  1:1862662/91‑1 (MQ=255)

                                         aaaTTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAAt                                                   <  1:184851/91‑1 (MQ=255)

                                           aTTAGAAGAGTAAAGTAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATT‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTg                                                 <  1:3741941/91‑1 (MQ=255)

                                              agaagaGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCaa                                              <  1:1985386/91‑1 (MQ=255)

                                              agaagaGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCaa                                              <  1:3961534/91‑1 (MQ=255)

                                              agaagaGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCaa                                              >  1:3632698/1‑91 (MQ=255)

                                              agaagaGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCaa                                              <  1:1684096/91‑1 (MQ=255)

                                               gaagaGTAAAATAAAAAACATTCAAAGATTATGCCAATACATTAAATCTTTCAATG‑TTTTTTTT‑GATTTATTTTACATCTTGAATAGCaaa                                             >  1:3852769/1‑91 (MQ=255)

                                               gaagaGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCaaa                                             >  1:708994/1‑91 (MQ=255)

                                               gaagaGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCaaa                                             >  1:708666/1‑91 (MQ=255)

                                                 agagTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATg                                           <  1:1492870/91‑1 (MQ=255)

                                                 agagTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATg                                           <  1:596532/91‑1 (MQ=255)

                                                   agTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactt                                           <  1:168995‑M2/91‑52 (MQ=255)

                                                   agTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTa                                         <  1:530864/91‑1 (MQ=255)

                                                   agTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTa                                         <  1:3999869/91‑1 (MQ=255)

                                                      aaaataaaaAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGt                                      <  1:193494/91‑1 (MQ=255)

                                                        aataaaaAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTc                                    <  1:2269921/91‑1 (MQ=255)

                                                         ataaaaAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTca                                   <  1:2720458/91‑1 (MQ=255)

                                                         ataaaaAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑‑‑TTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTcaca                                 >  1:2632481/1‑91 (MQ=255)

                                                            AAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTTCATCTTGAATTGCATATGTAAgttcatta                                <  1:2711867‑M1/91‑4 (MQ=255)

                                                             aaaaCATTCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagac                                 <  1:2143572‑M2/91‑62 (MQ=255)

                                                              aaaCATTCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagact                                <  1:3930425‑M2/91‑63 (MQ=255)

                                                                 cATTCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagactgca                             <  1:431852‑M2/91‑66 (MQ=255)

                                                                  aTTCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagactgcat                            <  1:965066‑M2/91‑67 (MQ=255)

                                                                   ttCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagactgcatc                           <  1:1451782‑M2/91‑68 (MQ=255)

                                                                   ttCAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagactgcatc                           <  1:1790052‑M2/91‑68 (MQ=255)

                                                                   TTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTAcaag                         <  1:2333064‑M1/91‑1 (MQ=255)

                                                                   TTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTAcaag                         <  1:2333751‑M1/91‑1 (MQ=255)

                                                                     cAAAGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagactgcatcat                         <  1:1279755‑M2/91‑70 (MQ=255)

                                                                     CAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTAcaagca                       >  1:330543‑M1/1‑91 (MQ=255)

                                                                      aaaGATTATGCCAACACATTAaatctttgaatgttttttattttactcttctaatttttcatcctttaactttggtttagactgcatcatt                        <  1:2831146‑M2/91‑71 (MQ=255)

                                                                      AAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTATTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTAcaagcaa                      <  1:3497599‑M1/91‑1 (MQ=255)

                                                                       AAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTAcaagcaag                     <  1:13734‑M1/91‑1 (MQ=255)

                                                                         GATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGtt                   >  1:1611906‑M1/1‑91 (MQ=255)

                                                                         GATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGtt                   >  1:1611896‑M1/1‑91 (MQ=255)

                                                                         GATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGtt                   >  1:3965371‑M1/1‑91 (MQ=255)

                                                                            TATGCCAACACATTAAATCTTTGAATG‑TTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGa                 <  1:561424‑M1/91‑1 (MQ=255)

                                                                            TATGCCAACACATTAAATCTTTGAATG‑TTTTTTTTTGTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGa                 <  1:561615‑M1/91‑1 (MQ=255)

                                                                            TATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTCGAc                <  1:3216667‑M1/91‑1 (MQ=255)

                                                                             aTGCCAACATATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGAcc               <  1:3978717/91‑1 (MQ=255)

                                                                             aTGCCAACACATTAAATCTTTGAATGTTTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGAc                >  1:575192/1‑91 (MQ=255)

                                                                             aTGCCAACACATTAAATCTTTGAATGTTTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGAc                >  1:3803491/1‑91 (MQ=255)

                                                                                 cAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCg           >  1:1908373/1‑91 (MQ=255)

                                                                                 cAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCg           >  1:1907726/1‑91 (MQ=255)

                                                                                 cAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCg           >  1:1907666/1‑91 (MQ=255)

                                                                                 cAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCg           <  1:641055/91‑1 (MQ=255)

                                                                                  aaCACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGa          <  1:4118105/91‑1 (MQ=255)

                                                                                   acacATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGAc         <  1:285746/91‑1 (MQ=255)

                                                                                     acaTTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAg       <  1:1199255/91‑1 (MQ=255)

                                                                                     acaTTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAg       <  1:3939825/91‑1 (MQ=255)

                                                                                     acaTTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTGGACCATCGACAg       <  1:3191057/91‑1 (MQ=255)

                                                                                      caTTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGt      <  1:3335499/91‑1 (MQ=255)

                                                                                      caTTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGt      <  1:3335682/91‑1 (MQ=255)

                                                                                          aaaTCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCt  >  1:2987720/1‑91 (MQ=255)

                                                                                          aaaTCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCt  <  1:887363/91‑1 (MQ=255)

TTAATCGAATGATGCAGTCTAAACCAAAGTTAAAGGATGAAAAATTAGAAGAGTAAAATAAAAAACATTCAAAGATTATGCCAACACATTAAATCTTTGAATG‑TTTTTTTT‑GTTTTATTTTACATCTTGAATTGCAAATGTAAGTTCACAACTACAAGCAAGTTGACCATCGACAGTAGCT  >  USA300TCH1516_ALE/2218152‑2218332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.