BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2236023 =	92 (0.940)	7 (0.080)	5/142	NT	9.2%	intergenic (‑296/+51)	tdk/rpmE2	Thymidine kinase/50S ribosomal protein L31 type B
*	?	USA300TCH1516_ALE	2236061 =	56 (0.640)	7 (0.080)	5/142	NT	9.2%	intergenic (‑334/+13)	tdk/rpmE2	Thymidine kinase/50S ribosomal protein L31 type B

Only 100 of 105 total aligned reads displayed.

CTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGACGTCC  >  USA300TCH1516_ALE/2235971‑2236151

cttcttTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATATGATGCAGACAGCTTa                                                                                            <  1:3532891/91‑1 (MQ=255)

cttcttTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTa                                                                                            <  1:4041799/91‑1 (MQ=255)

 ttcttTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTaa                                                                                           <  1:1222665/91‑1 (MQ=255)

   cttTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACg                                                                                         >  1:2932549/1‑91 (MQ=255)

   cttTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACg                                                                                         >  1:2932415/1‑91 (MQ=255)

   cttTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACg                                                                                         <  1:1240849/91‑1 (MQ=255)

      taaaCACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGAtt                                                                                      <  1:1136708/89‑1 (MQ=255)

        aaCACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTAc                                                                                    >  1:3465654/1‑91 (MQ=255)

            caGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACtata                                                                                <  1:584538/91‑1 (MQ=255)

                cGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAg                                                                            >  1:1108943/1‑91 (MQ=255)

                cGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAg                                                                            <  1:313486/91‑1 (MQ=255)

                cGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAg                                                                            <  1:273444/91‑1 (MQ=255)

                cGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAg                                                                            <  1:2222836/91‑1 (MQ=255)

                cGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAg                                                                            >  1:435844/1‑91 (MQ=255)

                 gTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAgt                                                                           <  1:955303/91‑1 (MQ=255)

                 gTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAgt                                                                           <  1:3431455/91‑1 (MQ=255)

                 gTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAgt                                                                           <  1:1359133/91‑1 (MQ=255)

                   aaGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAgttg                                                                         <  1:640235/91‑1 (MQ=255)

                     gTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAgttgtt                                                                       <  1:1932585/91‑1 (MQ=255)

                      tatataCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGttt                                                                      <  1:640944/91‑1 (MQ=255)

                      tatataCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGttt                                                                      <  1:399291/91‑1 (MQ=255)

                        tataCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGa                                                                    >  1:737120/1‑91 (MQ=255)

                         ataCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGAt                                                                   <  1:1993366/91‑1 (MQ=255)

                         ataCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGAt                                                                   <  1:1991362/91‑1 (MQ=255)

                         ataCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGAt                                                                   <  1:1991242/91‑1 (MQ=255)

                          taCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGAtt                                                                  >  1:1555362/1‑91 (MQ=255)

                           aCCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGAttt                                                                 >  1:447750/1‑91 (MQ=255)

                              cTTGCTACGATTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAg                                                              <  1:3729652/91‑1 (MQ=255)

                               ttACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGa                                                             <  1:2930438/91‑1 (MQ=255)

                               ttACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGa                                                             <  1:2929259/91‑1 (MQ=255)

                                 actacGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGCTGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGAcc                                                           <  1:3296687/91‑1 (MQ=255)

                                 actacGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGAcc                                                           <  1:4065380/91‑1 (MQ=255)

                                 actacGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGAcc                                                           <  1:1652601/91‑1 (MQ=255)

                                 actacGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGAcc                                                           <  1:3666961/91‑1 (MQ=255)

                                 actacGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGAcc                                                           <  1:3666846/91‑1 (MQ=255)

                                    acGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCaaa                                                        <  1:1158422/91‑1 (MQ=255)

                                    acGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCaaa                                                        >  1:2601836/1‑91 (MQ=255)

                                    acGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCaaa                                                        >  1:2602266/1‑91 (MQ=255)

                                    acGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCaaa                                                        >  1:2606495/1‑91 (MQ=255)

                                      gCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACt                                                      >  1:3646948/1‑91 (MQ=255)

                                      gCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACt                                                      >  1:1184861/1‑91 (MQ=255)

                                            aaataaaAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTttgt                                                >  1:601773/1‑91 (MQ=255)

                                            aaataaaAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTttgt                                                >  1:2113559/1‑91 (MQ=255)

                                             aataaaAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTttgtt                                               <  1:1273609/91‑1 (MQ=255)

                                              ataaaAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTttgttg                                              >  1:3253122/1‑91 (MQ=255)

                                               taaaAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGa                                             >  1:3965824/1‑91 (MQ=255)

                                                aaaaaaGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGaa                                            <  1:1856309/91‑1 (MQ=255)

                                                 aaaaaGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGaaa                                           >  1:2017559/1‑91 (MQ=255)

                                                    AAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGt                                        <  1:2213467‑M1/91‑1 (MQ=255)

                                                     AGCTGTCTACAATTCCATTATAGGATGCAAACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGtt                                       <  1:3479543‑M1/91‑1 (MQ=255)

                                                       CTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTcc                                     <  1:2269751‑M1/91‑1 (MQ=255)

                                                       CTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTcc                                     <  1:4050577‑M1/91‑1 (MQ=255)

                                                        TGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCca                                    <  1:2408986‑M1/91‑1 (MQ=255)

                                                        TGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCca                                    <  1:1766649‑M1/91‑1 (MQ=255)

                                                        TGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCca                                    >  1:1167219‑M1/1‑91 (MQ=255)

                                                        TGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCca                                    <  1:2408174‑M1/91‑1 (MQ=255)

                                                        TGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCca                                    <  1:2408922‑M1/91‑1 (MQ=255)

                                                         GTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCcac                                   <  1:1646429‑M1/91‑1 (MQ=255)

                                                          tctgcatcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCcaca                                  >  1:3775373‑M2/33‑91 (MQ=255)

                                                          tctgcatcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCcaca                                  >  1:665160‑M2/33‑91 (MQ=255)

                                                           ctgcatcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCacac                                 >  1:1965476‑M2/32‑91 (MQ=255)

                                                           CTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCacac                                 <  1:3000825‑M1/91‑1 (MQ=255)

                                                            tgcatcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACg                                >  1:549480‑M2/31‑91 (MQ=255)

                                                            tgcatcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACg                                >  1:1015309‑M2/31‑91 (MQ=255)

                                                            TACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACg                                <  1:1977366‑M1/91‑1 (MQ=255)

                                                            TACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACg                                >  1:2765938‑M1/1‑91 (MQ=255)

                                                              catcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTc                              <  1:1948934‑M2/63‑1 (MQ=255)

                                                               atcctataatggaattgtagacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTcc                             >  1:445155‑M2/28‑91 (MQ=255)

                                                                 ttCTATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTGCCACACGTCCAt                           <  1:3205549/91‑1 (MQ=255)

                                                                     aTTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCgc                       >  1:351028/1‑91 (MQ=255)

                                                                      ttATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCgca                      >  1:1368816/1‑91 (MQ=255)

                                                                      ttATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTGGAAACGTTCCACACGTCCATCCgca                      >  1:3866561/1‑91 (MQ=255)

                                                                        attggATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCgcagc                    <  1:883327/88‑1 (MQ=255)

                                                                        ataGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCgcagc                    <  1:954261/91‑1 (MQ=255)

                                                                        ataGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCgcagc                    >  1:1407782/1‑91 (MQ=255)

                                                                         taGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCgcagca                   <  1:2235480/91‑1 (MQ=255)

                                                                          aGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGcagcag                  <  1:1615934/91‑1 (MQ=255)

                                                                          aGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGcagcag                  <  1:3715112/91‑1 (MQ=255)

                                                                            gATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCg                >  1:3235769/1‑91 (MQ=255)

                                                                            gATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCg                >  1:3235798/1‑91 (MQ=255)

                                                                               gCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAt             <  1:3250698/91‑1 (MQ=255)

                                                                               gCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAt             >  1:1583392/1‑91 (MQ=255)

                                                                               gCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAt             >  1:17763/1‑91 (MQ=255)

                                                                               gCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAt             >  1:2121919/1‑91 (MQ=255)

                                                                               gCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAt             <  1:2143978/91‑1 (MQ=255)

                                                                               gCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAt             <  1:2144185/91‑1 (MQ=255)

                                                                                cAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAtt            >  1:3773734/1‑91 (MQ=255)

                                                                                cAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAtt            >  1:3773614/1‑91 (MQ=255)

                                                                                cAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAtt            >  1:1456564/1‑91 (MQ=255)

                                                                                 agacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAttt           >  1:1006805‑M2/10‑91 (MQ=255)

                                                                                  gacagcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAAtttt          >  1:1269137‑M2/9‑91 (MQ=255)

                                                                                     agcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGa       <  1:1705386‑M2/86‑1 (MQ=255)

                                                                                     agcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGa       >  1:1723801‑M2/6‑91 (MQ=255)

                                                                                     agcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACCTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGa       <  1:4136006‑M2/86‑1 (MQ=255)

                                                                                      gcttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGAc      >  1:615358‑M2/5‑91 (MQ=255)

                                                                                        ttAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGACGt    <  1:3420445‑M2/89‑1 (MQ=255)

                                                                                          aaCGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGCATTTTTGACGTcc  >  1:4134649/1‑91 (MQ=255)

                                                                                          aaCGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGACGTcc  >  1:580319/1‑91 (MQ=255)

                                                                                          aaCGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGACGTcc  >  1:1059723/1‑91 (MQ=255)

                                                                                          aaCGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGACGTcc  >  1:1029266/1‑91 (MQ=255)

CTTCTTTGAACACAGTCGTAAGTATATACCCTTACTACGCTTATAAATAAAAAAGCTGTCTACAATTCCATTATAGGATGCAGACAGCTTAACGATTACTATATTAGTTGTTTGATTTAAGACCAAACTTTTTGTTGAAACGTTCCACACGTCCATCCGCAGCAGCGAATTTTTGACGTCC  >  USA300TCH1516_ALE/2235971‑2236151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.