BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2255601	95 (0.970)	7 (0.080)	5/142	NT	7.5%	intergenic (‑279/‑36)	deoC2/deoD1	Deoxyribose‑phosphate aldolase 2/Purine nucleoside phosphorylase DeoD‑type 1
*	?	USA300TCH1516_ALE	= 2255626	89 (1.020)	7 (0.080)	5/142	NT	7.5%	intergenic (‑304/‑11)	deoC2/deoD1	Deoxyribose‑phosphate aldolase 2/Purine nucleoside phosphorylase DeoD‑type 1

Only 100 of 125 total aligned reads displayed.

ATATTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCGCTACG  >  USA300TCH1516_ALE/2255536‑2255716

atatTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGgag                                                                                            >  1:1687996/1‑91 (MQ=255)

atatTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGgag                                                                                            >  1:3347187/1‑91 (MQ=255)

atatTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATACTAAGgag                                                                                            >  1:2075086/1‑91 (MQ=255)

 tatTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGa                                                                                           <  1:3950068‑M2/91‑2 (MQ=255)

  atTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaa                                                                                          >  1:1198537‑M2/1‑89 (MQ=255)

   tttttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaag                                                                                         >  1:3968891‑M2/1‑88 (MQ=255)

   tttttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaag                                                                                         >  1:1854925‑M2/1‑88 (MQ=255)

   tttttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaag                                                                                         >  1:3522995‑M2/1‑88 (MQ=255)

   tttttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCGTAAAATTATTAATGAATATTAAGGAGaag                                                                                         <  1:2308045‑M2/91‑4 (MQ=255)

     tttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagat                                                                                       >  1:164247‑M2/1‑86 (MQ=255)

     tttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagat                                                                                       >  1:1645876‑M2/1‑86 (MQ=255)

     tttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagat                                                                                       >  1:164809‑M2/1‑86 (MQ=255)

     tttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagat                                                                                       <  1:2048764‑M2/91‑6 (MQ=255)

     tttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagat                                                                                       <  1:2133116‑M2/91‑6 (MQ=255)

     tttATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagat                                                                                       <  1:3905674‑M2/91‑6 (MQ=255)

         taATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagataaca                                                                                   >  1:1115735‑M2/1‑82 (MQ=255)

          aaTTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACaa                                                                                  <  1:1031159/91‑1 (MQ=255)

            ttCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAAt                                                                                <  1:3784141/91‑1 (MQ=255)

              cTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGa                                                                              >  1:2582400/1‑91 (MQ=255)

               tttAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGAc                                                                             <  1:2755222/91‑1 (MQ=255)

               tttAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGAc                                                                             >  1:1014003/1‑91 (MQ=255)

               tttAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGAc                                                                             <  1:1824936/91‑1 (MQ=255)

                 tAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaa                                                                           <  1:50810/91‑1 (MQ=255)

                 tAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaa                                                                           <  1:581416/91‑1 (MQ=255)

                 tAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaa                                                                           <  1:3442124/91‑1 (MQ=255)

                  aaTTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaaa                                                                          <  1:1391989/91‑1 (MQ=255)

                  aaTTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaaa                                                                          <  1:1982722/91‑1 (MQ=255)

                  aaTTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaaa                                                                          <  1:1391550/91‑1 (MQ=255)

                  aaTTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATCATTAATGAATATTAAGGAGAAGATAACAAATGACaaa                                                                          <  1:3498648/91‑1 (MQ=255)

                   aTTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACaaaa                                                                         >  1:1946707/1‑91 (MQ=255)

                     tCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAgg                                                                       <  1:431117/91‑1 (MQ=255)

                        ataGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTac                                                                    <  1:3835516/91‑1 (MQ=255)

                        ataGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTac                                                                    >  1:249512/1‑91 (MQ=255)

                         taGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTaca                                                                   <  1:1575280/91‑1 (MQ=255)

                           gTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGaagataacatttgtttcccttttttgc                                                                 <  1:40018‑M2/91‑28 (MQ=255)

                            tACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTAcacca                                                                <  1:1415955/91‑1 (MQ=255)

                            tACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTAcacca                                                                <  1:2913023/91‑1 (MQ=255)

                             aCAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTAcaccac                                                               >  1:3092027/1‑91 (MQ=255)

                             aCAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTAcaccac                                                               >  1:3062044/1‑91 (MQ=255)

                               aaaaaTTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACat                                                             >  1:2027025/1‑91 (MQ=255)

                                aaaaTTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACata                                                            >  1:902738/1‑91 (MQ=255)

                                 aaaTTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACatat                                                           <  1:2851715/91‑1 (MQ=255)

                                 aaaTTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACatat                                                           <  1:2780419/91‑1 (MQ=255)

                                 aaaTTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACatat                                                           <  1:2780511/91‑1 (MQ=255)

                                   aTTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTc                                                         >  1:121909/1‑91 (MQ=255)

                                     tCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCaa                                                       <  1:3231710/91‑1 (MQ=255)

                                      cGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAAc                                                      >  1:2147234/1‑91 (MQ=255)

                                      cGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAAc                                                      >  1:2146750/1‑91 (MQ=255)

                                       gCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAAcc                                                     >  1:1109385/1‑91 (MQ=255)

                                       gCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAAcc                                                     >  1:2805419/1‑91 (MQ=255)

                                        cAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCa                                                    >  1:1403176/1‑91 (MQ=255)

                                         aaaaaaGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCaa                                                   <  1:3912718/91‑1 (MQ=255)

                                          aaaaaGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCaaa                                                  >  1:3562327/1‑91 (MQ=255)

                                          aaaaaGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCaaa                                                  >  1:4071806/1‑91 (MQ=255)

                                          aaaaaGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCaaa                                                  <  1:1567627/91‑1 (MQ=255)

                                               gggAAACTAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAAGCAAATGGAg                                             <  1:2082633/91‑1 (MQ=255)

                                               gggAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAg                                             <  1:2289549/91‑1 (MQ=255)

                                                ggAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGt                                            <  1:3675547/91‑1 (MQ=255)

                                                ggAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGt                                            <  1:1719039/91‑1 (MQ=255)

                                                ggAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGt                                            <  1:3675606/91‑1 (MQ=255)

                                                  aaaCAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTaa                                          >  1:2783653/1‑91 (MQ=255)

                                                  aaaCAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTaa                                          >  1:939184/1‑91 (MQ=255)

                                                    aCAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTaaaa                                        >  1:493187/1‑91 (MQ=255)

                                                     cAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTaaaaa                                       >  1:63558/1‑91 (MQ=255)

                                                       aaTGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAAtt                                     <  1:727105/91‑1 (MQ=255)

                                                        aTGTTATCTTAAAATTATTAATGAATATTAAGGAGaagataacatttgtttcccttttttgcgaatttttgtactatagaattaaagaatt                                    <  1:1398242‑M2/91‑57 (MQ=255)

                                                         tGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGc                                   <  1:690876/91‑1 (MQ=255)

                                                          gTTATCTTAAAATTATTAATGAATATTAAGGAGaagataacatttgtttcccttttttgcgaatttttgtactatagaattaaagaattat                                  <  1:823347‑M2/91‑59 (MQ=255)

                                                           ttATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTa                                 <  1:1527298/91‑1 (MQ=255)

                                                           ttATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTa                                 >  1:1906053/1‑91 (MQ=255)

                                                             aTCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTaaa                               >  1:3058679/1‑91 (MQ=255)

                                                              tCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTaaaa                              <  1:2856172/91‑1 (MQ=255)

                                                                ttAAAATTATTAATGAATATTAAGGAGaagataacatttgtttcccttttttgcgaatttttgtactatagaattaaagaatataaaaata                            <  1:2030741‑M2/91‑65 (MQ=255)

                                                                 tAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAg                           <  1:1160130/91‑1 (MQ=255)

                                                                  aaaaTTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGt                          <  1:4018521/91‑1 (MQ=255)

                                                                  aaaaTTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGt                          <  1:4017889/91‑1 (MQ=255)

                                                                   aaaTTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTa                         >  1:1235943/1‑91 (MQ=255)

                                                                    aaTTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTAt                        <  1:1398312/91‑1 (MQ=255)

                                                                    aaTTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTAt                        <  1:2843291/91‑1 (MQ=255)

                                                                     attattAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTAtt                       <  1:1287177/91‑1 (MQ=255)

                                                                     attattAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTAtt                       <  1:2199822/91‑1 (MQ=255)

                                                                     attattAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGGACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTAtt                       <  1:4139703/91‑1 (MQ=255)

                                                                      ttattaATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTa                      <  1:1487508/91‑1 (MQ=255)

                                                                      ttattaATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTa                      <  1:1487365/91‑1 (MQ=255)

                                                                         ttaATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACGTATTCAACCAAATGGAGTAAAAATTGCTAGAACAGTATTAATg                   >  1:4148183/1‑91 (MQ=255)

                                                                         ttaATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATg                   >  1:2669926/1‑91 (MQ=255)

                                                                         ttaATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATg                   >  1:1720915/1‑91 (MQ=255)

                                                                          taATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGc                  >  1:327304/1‑91 (MQ=255)

                                                                          taATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGc                  >  1:1590280/1‑91 (MQ=255)

                                                                          taATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGc                  >  1:2118652/1‑91 (MQ=255)

                                                                           aaTGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGcc                 >  1:487512/1‑91 (MQ=255)

                                                                            aTGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCt                <  1:1753299/91‑1 (MQ=255)

                                                                             tGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTg               >  1:3146294/1‑91 (MQ=255)

                                                                                  atTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGAt          <  1:360696/91‑1 (MQ=255)

                                                                                   ttAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATc         <  1:67569/91‑1 (MQ=255)

                                                                                     aaGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCg       >  1:197997/1‑91 (MQ=255)

                                                                                     aaGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCg       >  1:398124/1‑91 (MQ=255)

                                                                                        gagaAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCGCTa    >  1:1839525/1‑91 (MQ=255)

                                                                                          gaagaTAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCGCTACg  >  1:2230224/1‑91 (MQ=255)

                                                                                          gaagaTAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCGCTACg  >  1:2230256/1‑91 (MQ=255)

ATATTTTTATAATTCTTTAATTCTATAGTACAAAAATTCGCAAAAAAGGGAAACAAATGTTATCTTAAAATTATTAATGAATATTAAGGAGAAGATAACAAATGACAAAAGGTACACCACATATTCAACCAAATGGAGTAAAAATTGCTAAAACAGTATTAATGCCTGGCGATCCGCTACG  >  USA300TCH1516_ALE/2255536‑2255716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.