New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2256396 =75 (0.760)17 (0.210) 8/132 NT 20.7% intergenic (+49/+72) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U
?USA300TCH1516_ALE 2256443 = 68 (0.840)intergenic (+96/+25) deoD1/dps Purine nucleoside phosphorylase DeoD‑type 1/General stress protein 20U

Only 100 of 128 total aligned reads displayed.

AAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAT  >  USA300TCH1516_ALE/2256355‑2256533
                                                                                        |                                                                                          
aaaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttatt                                                                                          <  1:522408/91‑1 (MQ=255)
 aaTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTCGGCTtttattt                                                                                         >  1:3761729/1‑91 (MQ=255)
  aTTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTtttattta                                                                                        <  1:2310382/91‑1 (MQ=255)
   ttGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTttatttat                                                                                       >  1:1049284/1‑91 (MQ=255)
   ttGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTttatttat                                                                                       >  1:3709885/1‑91 (MQ=255)
   ttGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTttatttat                                                                                       >  1:2269088/1‑91 (MQ=255)
   ttGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTttatttat                                                                                       >  1:310136/1‑91 (MQ=255)
      aCTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatt                                                                                    <  1:3151752/91‑1 (MQ=255)
       cTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatta                                                                                   >  1:2044126/1‑91 (MQ=255)
       cTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTAtatta                                                                                   >  1:2518958/1‑91 (MQ=255)
         ttAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATattatt                                                                                 >  1:3888816/1‑91 (MQ=255)
         ttAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATattatt                                                                                 >  1:3888808/1‑91 (MQ=255)
         ttAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTAATTTATattatt                                                                                 <  1:3194713/91‑1 (MQ=255)
           aaTTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTAc                                                                               <  1:4110239/91‑1 (MQ=255)
               gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           >  1:2804218/1‑91 (MQ=255)
               gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           >  1:2804109/1‑91 (MQ=255)
               gCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTAt                                                                           >  1:166850/1‑91 (MQ=255)
                ctctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATc                                                                          <  1:1163911/91‑1 (MQ=255)
                 tctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCt                                                                         >  1:2718202/1‑91 (MQ=255)
                  ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  1:1496702/91‑1 (MQ=255)
                  ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  1:3622674/91‑1 (MQ=255)
                  ctTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTg                                                                        <  1:265548/91‑1 (MQ=255)
                    ttAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTa                                                                      >  1:3094893/1‑91 (MQ=255)
                    ttAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTa                                                                      >  1:3093523/1‑91 (MQ=255)
                    ttAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTa                                                                      >  1:1040179/1‑91 (MQ=255)
                     tAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAg                                                                     >  1:4041915/1‑91 (MQ=255)
                      aaCAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGa                                                                    <  1:3143728/91‑1 (MQ=255)
                        cAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGAtt                                                                  <  1:1894576/91‑1 (MQ=255)
                              gATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTta                                                            >  1:2499087/1‑91 (MQ=255)
                              gATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTta                                                            >  1:2141070/1‑91 (MQ=255)
                               taatataaataaaagccaacacataaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTtaa                                                           >  1:797044‑M2/58‑91 (MQ=255)
                                ttAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaag                                                          >  1:2428313/1‑91 (MQ=255)
                                  aaaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagta                                                        <  1:1970164/91‑1 (MQ=255)
                                   aaCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaa                                                       >  1:193299/1‑91 (MQ=255)
                                    aCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaag                                                      >  1:3231359/1‑91 (MQ=255)
                                    aCTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTtaagtaag                                                      >  1:3345160/1‑91 (MQ=255)
                                     cccAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGa                                                     >  1:151346/3‑91 (MQ=255)
                                       cAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAtt                                                   <  1:3898884/91‑1 (MQ=255)
                                        aaaaaGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGAttt                                                  >  1:1298109/1‑91 (MQ=255)
                                            AGCCAACACATTCTGGGTGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAAc                                              <  1:1209846‑M1/91‑1 (MQ=255)
                                               caacacataaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATc                                           >  1:419577‑M2/42‑91 (MQ=255)
                                               CAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATc                                           <  1:3071386‑M1/91‑1 (MQ=255)
                                               CAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATc                                           >  1:2965420‑M1/1‑91 (MQ=255)
                                                 ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  1:2151576‑M1/91‑1 (MQ=255)
                                                 ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  1:463921‑M1/91‑1 (MQ=255)
                                                 ACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCa                                         <  1:3585884‑M1/91‑1 (MQ=255)
                                                   ACATTCTTGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAAt                                       >  1:2071840‑M1/1‑91 (MQ=255)
                                                   ACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAAt                                       <  1:2018183‑M1/91‑1 (MQ=255)
                                                     ataaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTa                                     >  1:1223000‑M2/36‑91 (MQ=255)
                                                      taaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTAt                                    >  1:2699602‑M2/35‑91 (MQ=255)
                                                      taaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTAt                                    >  1:2766446‑M2/35‑91 (MQ=255)
                                                      taaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTAt                                    >  1:2699818‑M2/35‑91 (MQ=255)
                                                      TTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTAt                                    >  1:1345200‑M1/1‑91 (MQ=255)
                                                      TTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTAt                                    >  1:1345257‑M1/1‑91 (MQ=255)
                                                       tCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   <  1:1055150/91‑1 (MQ=255)
                                                       aaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   >  1:3290459‑M2/34‑91 (MQ=255)
                                                       aaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   >  1:421686‑M2/34‑91 (MQ=255)
                                                       aaatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATATGTAGACTAGCTTAAGTAAGATTTAAACATCCAATTATg                                   >  1:3526281‑M2/34‑91 (MQ=255)
                                                        cTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  >  1:153846/1‑91 (MQ=255)
                                                        cTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  <  1:466301/91‑1 (MQ=255)
                                                        aatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  >  1:1274084‑M2/33‑91 (MQ=255)
                                                        aatggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGt                                  >  1:1274085‑M2/33‑91 (MQ=255)
                                                         tGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGtt                                 <  1:2987591/91‑1 (MQ=255)
                                                         tGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGtt                                 >  1:641307/1‑91 (MQ=255)
                                                          tggggatacgcccagaatgtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGttt                                >  1:426047‑M2/31‑91 (MQ=255)
                                                          gggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGttt                                <  1:714621/91‑1 (MQ=255)
                                                          gggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGttt                                <  1:714459/91‑1 (MQ=255)
                                                          gggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGttt                                <  1:714411/91‑1 (MQ=255)
                                                          gggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGttt                                <  1:491178/91‑1 (MQ=255)
                                                          gggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGttt                                >  1:455950/1‑91 (MQ=255)
                                                           ggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTa                               <  1:1566227/91‑1 (MQ=255)
                                                           ggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTa                               <  1:2875710/91‑1 (MQ=255)
                                                           ggCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTa                               >  1:1220370/1‑91 (MQ=255)
                                                            gCGTATCCCCATGCATGTGTTGGCTTTTATTTATATTAGTACTTATCTGTAGATGAGCTTAGGTAAGATGTAAACATCCAATTATGTTTAt                              <  1:1252610/91‑1 (MQ=255)
                                                              gTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCt                            <  1:3125599/91‑1 (MQ=255)
                                                               tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  1:905175/91‑1 (MQ=255)
                                                               tATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTa                           <  1:2836988/91‑1 (MQ=255)
                                                                 tCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACt                         <  1:1382189/91‑1 (MQ=255)
                                                                 tCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACt                         <  1:1382303/91‑1 (MQ=255)
                                                                 tCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACt                         <  1:76481/91‑1 (MQ=255)
                                                                  ccccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTg                        <  1:2415520/91‑1 (MQ=255)
                                                                  ccccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTg                        <  1:2415493/91‑1 (MQ=255)
                                                                    ccATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGAt                      >  1:416596/1‑91 (MQ=255)
                                                                     cATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATg                     <  1:2161797/91‑1 (MQ=255)
                                                                      aTTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGt                    >  1:4086558/1‑91 (MQ=255)
                                                                       tttATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGtt                   >  1:1327673/1‑91 (MQ=255)
                                                                            gtgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCAt              <  1:1643516‑M2/79‑1 (MQ=255)
                                                                             tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  1:1216644‑M2/12‑91 (MQ=255)
                                                                             tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  1:3598645‑M2/12‑91 (MQ=255)
                                                                             tgttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             >  1:3598581‑M2/12‑91 (MQ=255)
                                                                             tgttggcttgtATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             <  1:3976763‑M2/80‑1 (MQ=255)
                                                                             tgttggcttatATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATa             <  1:3977917‑M2/80‑1 (MQ=255)
                                                                               ttggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATAcc           <  1:2064730‑M2/82‑1 (MQ=255)
                                                                               ttggcttctATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATAcc           <  1:2066327‑M2/82‑1 (MQ=255)
                                                                                tggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCt          <  1:847402‑M2/83‑1 (MQ=255)
                                                                                 ggcttttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCta         <  1:1357202‑M2/84‑1 (MQ=255)
                                                                                 ggcgtttATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCta         <  1:3339137‑M2/84‑1 (MQ=255)
                                                                                       tATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACa   <  1:1988783‑M2/90‑1 (MQ=255)
                                                                                        atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  >  1:2780970/1‑91 (MQ=255)
                                                                                        atttatATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACat  >  1:2758926/1‑91 (MQ=255)
                                                                                        |                                                                                          
AAATTGACTTTAATTGCTCTTTAACAATGCGATTAAACTCAAAAAGCCAACACATTCTGGGCGTATCCCCATTTATGTGTTGGCTTTTATTTATATTATTACTTATCTGTAGATTAGCTTAAGTAAGATTTAAACATCCAATTATGTTTATCTACTGATGTTTGCATACCTATAAACAT  >  USA300TCH1516_ALE/2256355‑2256533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.