BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2333009 =	100 (1.020)	6 (0.070)	4/136	NT	7.0%	intergenic (‑119/+249)	lacA/lacR	Galactose‑6‑phosphate isomerase subunit LacA/Lactose phosphotransferase system repressor
*	?	USA300TCH1516_ALE	2333060 =	74 (0.890)	6 (0.070)	4/136	NT	7.0%	intergenic (‑170/+198)	lacA/lacR	Galactose‑6‑phosphate isomerase subunit LacA/Lactose phosphotransferase system repressor

Only 100 of 123 total aligned reads displayed.

GAGAAAAGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGTT  >  USA300TCH1516_ALE/2332970‑2333150

gagaAAAGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGa                                                                                            >  1:3252003/1‑91 (MQ=255)

gagaAAAGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGa                                                                                            >  1:1553160/1‑91 (MQ=255)

  gaAAAGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACg                                                                                          <  1:2729240/91‑1 (MQ=255)

   aaaaGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGt                                                                                         <  1:1393639/91‑1 (MQ=255)

   aaaaGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGt                                                                                         <  1:319792/91‑1 (MQ=255)

   aaaaGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGt                                                                                         <  1:176766/91‑1 (MQ=255)

      aGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTAtt                                                                                      <  1:1359680/91‑1 (MQ=255)

      aGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTAtt                                                                                      <  1:2698882/91‑1 (MQ=255)

      aGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTAtt                                                                                      <  1:2698910/91‑1 (MQ=255)

      aGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTAtt                                                                                      <  1:1702337/91‑1 (MQ=255)

        gCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTAtttt                                                                                    >  1:2472079/1‑91 (MQ=255)

        gCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTAtttt                                                                                    >  1:2472067/1‑91 (MQ=255)

          tttCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCa                                                                                  <  1:1825037/91‑1 (MQ=255)

          tttCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCa                                                                                  >  1:184826/1‑91 (MQ=255)

          tttCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCa                                                                                  <  1:2628980/91‑1 (MQ=255)

          tttCAATTTCATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCa                                                                                  <  1:3964138/91‑1 (MQ=255)

           ttCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCaa                                                                                 >  1:2827042/1‑91 (MQ=255)

            tCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCaaa                                                                                >  1:2076503/1‑91 (MQ=255)

             cAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAAc                                                                               <  1:1248813/91‑1 (MQ=255)

             cAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAAc                                                                               >  1:486077/1‑91 (MQ=255)

                 ttGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATa                                                                           >  1:3760470/1‑91 (MQ=255)

                   gATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAg                                                                         <  1:2877178/91‑1 (MQ=255)

                   gATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAg                                                                         <  1:3628834/91‑1 (MQ=255)

                    aTTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGt                                                                        <  1:3661040/91‑1 (MQ=255)

                     ttACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTg                                                                       <  1:456485/91‑1 (MQ=255)

                       aCGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGaa                                                                     >  1:1126557/1‑91 (MQ=255)

                       aCGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGaa                                                                     >  1:1074176/1‑91 (MQ=255)

                        cGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAAc                                                                    <  1:1069948/91‑1 (MQ=255)

                         gTTTAAATTATAAACATAAACAAACAATAAATCAACAGAATATGTTTATAAGATGTTTGTTTATGACGTATTTTCAAACAATAAGCGAACa                                                                   >  1:3852435/1‑91 (MQ=255)

                             aaaTTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCa                                                               >  1:62259/1‑91 (MQ=255)

                              aaTTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCat                                                              <  1:2580610/91‑1 (MQ=255)

                               aTTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCata                                                             <  1:2228650/91‑1 (MQ=255)

                                ttATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCatat                                                            <  1:510673/91‑1 (MQ=255)

                                  ataaacataaacAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATtg                                                          >  1:409167/1‑91 (MQ=255)

                                  ataaacataaacAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATtg                                                          >  1:3697224/1‑91 (MQ=255)

                                    aaacataaacaAACAATAAATCAGCATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATtgtg                                                        >  1:736989/1‑91 (MQ=255)

                                    aaacataaacaAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATtgtg                                                        <  1:715972/91‑1 (MQ=255)

                                     aacataaacaAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTgtgg                                                       <  1:504381/91‑1 (MQ=255)

                                     aacataaacaAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTgtgg                                                       >  1:3901522/1‑91 (MQ=255)

                                       CATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTgtggtg                                                     <  1:3045752‑M1/91‑1 (MQ=255)

                                           AACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGtgttgt                                                 <  1:2329739‑M1/91‑1 (MQ=255)

                                             caaacatattataaacatattatgttgatttattgtttgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGttt                                               >  1:2008561‑M2/46‑91 (MQ=255)

                                              aaacatattataaacatattatgttgatttattatttatttatgACGTATTTTCAAACAATGAGTGAACATTCATATTGTGGTGTTGtttt                                              >  1:3318974‑M2/45‑91 (MQ=255)

                                               AACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTa                                             <  1:3895086‑M1/91‑1 (MQ=255)

                                               AACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTa                                             <  1:2038417‑M1/91‑1 (MQ=255)

                                               AACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTa                                             <  1:2269718‑M1/91‑1 (MQ=255)

                                                 CAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAAt                                           <  1:66181‑M1/91‑1 (MQ=255)

                                                 CAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAAt                                           <  1:3053473‑M1/91‑1 (MQ=255)

                                                 CAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAAt                                           <  1:2942765‑M1/91‑1 (MQ=255)

                                                   aTAATTCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTa                                         <  1:2003564/91‑1 (MQ=255)

                                                   aTAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTa                                         <  1:2305888/91‑1 (MQ=255)

                                                     aaaTCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAgg                                       >  1:3835503/1‑91 (MQ=255)

                                                      aaTCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGt                                      <  1:1696316/91‑1 (MQ=255)

                                                       aTCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTa                                     >  1:613840/1‑91 (MQ=255)

                                                        tCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTAt                                    <  1:560398/91‑1 (MQ=255)

                                                         cAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACACTAAGTGAACCTTCATATTGTGGGGTTGTTTTAATTAGGTAtt                                   >  1:3797165/1‑91 (MQ=255)

                                                           aCATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCg                                 >  1:3954955/1‑91 (MQ=255)

                                                            cATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGt                                >  1:2839114/1‑91 (MQ=255)

                                                            cATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGt                                >  1:2837157/1‑91 (MQ=255)

                                                            cATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGt                                >  1:2758331/1‑91 (MQ=255)

                                                            cATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGt                                >  1:2758103/1‑91 (MQ=255)

                                                             ataatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTc                               <  1:2352789/91‑1 (MQ=255)

                                                             ataatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTc                               >  1:3589009/1‑91 (MQ=255)

                                                              taatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCt                              <  1:15269/91‑1 (MQ=255)

                                                              taatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCt                              <  1:3877340/91‑1 (MQ=255)

                                                              taatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCt                              <  1:3877260/91‑1 (MQ=255)

                                                              taatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCt                              <  1:1675821/91‑1 (MQ=255)

                                                              taatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCt                              <  1:1676167/91‑1 (MQ=255)

                                                              taatatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCt                              <  1:1677986/91‑1 (MQ=255)

                                                                atatgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGa                            >  1:1887124/1‑91 (MQ=255)

                                                                   tgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAAt                         >  1:327675/1‑91 (MQ=255)

                                                                   tgtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAAt                         >  1:329704/1‑91 (MQ=255)

                                                                    gtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAAtt                        >  1:1878436/1‑91 (MQ=255)

                                                                    gtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAAtt                        <  1:1734584/91‑1 (MQ=255)

                                                                    gtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAAtt                        <  1:1782403/91‑1 (MQ=255)

                                                                    gtttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTATGAAAtt                        >  1:3561878/1‑91 (MQ=255)

                                                                      ttataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTgt                      <  1:2151025/91‑1 (MQ=255)

                                                                        ataatatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTgtag                    <  1:1024552/91‑1 (MQ=255)

                                                                           atatgtttGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTaa                 <  1:323932/91‑1 (MQ=255)

                                                                              tgtttgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAAc              <  1:1603535‑M2/79‑1 (MQ=255)

                                                                              tgtttgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAAc              <  1:460222‑M2/79‑1 (MQ=255)

                                                                               gtttgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACt             <  1:2980345‑M2/80‑1 (MQ=255)

                                                                                 ttgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACttt           <  1:1360953‑M2/82‑1 (MQ=255)

                                                                                  tgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTg          <  1:3325168‑M2/83‑1 (MQ=255)

                                                                                  tgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTg          <  1:2467643‑M2/83‑1 (MQ=255)

                                                                                  tgtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTg          <  1:2467720‑M2/83‑1 (MQ=255)

                                                                                   gtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGt         >  1:2361482‑M2/8‑91 (MQ=255)

                                                                                   gtttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGt         >  1:2361498‑M2/8‑91 (MQ=255)

                                                                                    tttatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTc        >  1:1397582‑M2/7‑91 (MQ=255)

                                                                                      tatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGa      <  1:1124147‑M2/87‑1 (MQ=255)

                                                                                      tatgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGa      <  1:1124146‑M2/87‑1 (MQ=255)

                                                                                       atgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAg     <  1:3469337‑M2/88‑1 (MQ=255)

                                                                                       atgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAg     <  1:2615384‑M2/88‑1 (MQ=255)

                                                                                       atgACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGACGAg     >  1:3449976‑M2/4‑91 (MQ=255)

                                                                                         gACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGtcgacta   >  1:2587022‑M2/2‑88 (MQ=255)

                                                                                         gACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGt   <  1:576700‑M2/90‑1 (MQ=255)

                                                                                         gACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGt   >  1:189307‑M2/2‑91 (MQ=255)

                                                                                         gACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGt   <  1:703122‑M2/90‑1 (MQ=255)

                                                                                         gACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGt   >  1:2098249‑M2/2‑91 (MQ=255)

                                                                                          aCGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGtt  <  1:3999897/91‑1 (MQ=255)

GAGAAAAGGCTTTCAATTTGATTACGTTTAAATTATAAACATAAACAAACAATAAATCAACATAATATGTTTATAATATGTTTGTTTATGACGTATTTTCAAACAATAAGTGAACATTCATATTGTGGTGTTGTTTTAATTAGGTATTCGTCTGAAATTGTAGTAAAACTTTGTCGAGGTT  >  USA300TCH1516_ALE/2332970‑2333150

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.