BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2489730 =	134 (1.360)	13 (0.160)	9/136	NT	11.9%	intergenic (+79/+74)	tarF_2/USA300HOU_RS12815	Teichoic acid glycerol‑phosphate transferase/putative lipoprotein
*	?	USA300TCH1516_ALE	2489772 =	78 (0.930)	13 (0.160)	9/136	NT	11.9%	intergenic (+121/+32)	tarF_2/USA300HOU_RS12815	Teichoic acid glycerol‑phosphate transferase/putative lipoprotein

Only 100 of 134 total aligned reads displayed.

TTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTA  >  USA300TCH1516_ALE/2489683‑2489859

tttAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAt                                                                                        <  1:2219989/91‑1 (MQ=255)

 ttAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtt                                                                                       <  1:3134771/91‑1 (MQ=255)

  tAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttt                                                                                      >  1:2191312/1‑91 (MQ=255)

  tAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttt                                                                                      >  1:1422759/1‑91 (MQ=255)

  tAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttt                                                                                      >  1:1601047/1‑91 (MQ=255)

  tAAAAGTACTATAAAACGTAAACTTCGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttt                                                                                      <  1:3865694/91‑1 (MQ=255)

   aaaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttt                                                                                     <  1:2504800/91‑1 (MQ=255)

   aaaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttt                                                                                     >  1:3109771/1‑91 (MQ=255)

   aaaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttt                                                                                     <  1:2265232/91‑1 (MQ=255)

   aaaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttt                                                                                     <  1:3544572/91‑1 (MQ=255)

    aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttttt                                                                                    <  1:2141351/91‑1 (MQ=255)

    aaaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAttttt                                                                                    <  1:2811621/91‑1 (MQ=255)

     aaGTACTATAAAGCGTAGACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttttt                                                                                   <  1:1467548/91‑1 (MQ=255)

     aaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttttt                                                                                   >  1:3954665/1‑91 (MQ=255)

     aaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttttt                                                                                   >  1:1884821/1‑91 (MQ=255)

     aaGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTAtttttt                                                                                   <  1:3100129/91‑1 (MQ=255)

      agcaCTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTa                                                                                  >  1:1684541/4‑91 (MQ=255)

      aGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTa                                                                                  >  1:1684448/1‑91 (MQ=255)

       gTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTaa                                                                                 <  1:305836/91‑1 (MQ=255)

         aCTATAAAACGTGAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTGACCGTTTTATTTTTTAACt                                                                               <  1:1376536/91‑1 (MQ=255)

         aCTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGTTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACt                                                                               <  1:3290494/91‑1 (MQ=255)

         aCTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACt                                                                               <  1:1511982/91‑1 (MQ=255)

         aCTATAAAACGTAAACTTTGATACTCTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACt                                                                               <  1:3874211/91‑1 (MQ=255)

            ataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGc                                                                            >  1:1096128/1‑91 (MQ=255)

            ataAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGc                                                                            <  1:2046096/91‑1 (MQ=255)

              aaaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcat                                                                          >  1:1485763/1‑91 (MQ=255)

               aaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                         <  1:2399049/91‑1 (MQ=255)

               aaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                         <  1:677421/91‑1 (MQ=255)

               aaaCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatc                                                                         <  1:2399109/91‑1 (MQ=255)

                 aCGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGcatcat                                                                       <  1:3058057/91‑1 (MQ=255)

                  cGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATa                                                                      >  1:3042756/1‑91 (MQ=255)

                  cGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATa                                                                      >  1:3042709/1‑91 (MQ=255)

                    tAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGt                                                                    <  1:1885479/91‑1 (MQ=255)

                    tAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGt                                                                    >  1:1205617/1‑91 (MQ=255)

                    tAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGt                                                                    <  1:507513/91‑1 (MQ=255)

                       aCTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtat                                                                 >  1:785804/1‑91 (MQ=255)

                        cTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtata                                                                <  1:1608434/91‑1 (MQ=255)

                        cTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTtata                                                                >  1:4023244/1‑91 (MQ=255)

                         tttGATACTTTAAAATACGCAAAAAACGGTAAAGCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTatat                                                               <  1:3684664/91‑1 (MQ=255)

                         tttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTatat                                                               >  1:886772/1‑91 (MQ=255)

                          ttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATAtt                                                              <  1:2305841/91‑1 (MQ=255)

                          ttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATAtt                                                              <  1:3143496/91‑1 (MQ=255)

                          ttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATAtt                                                              <  1:3752184/91‑1 (MQ=255)

                          ttGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACAGTTTTATTTTTTAACTTGCATCATAGTTATAtt                                                              >  1:3685891/1‑91 (MQ=255)

                              tACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACa                                                          <  1:486706/91‑1 (MQ=255)

                               aCTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACat                                                         >  1:2217218/1‑91 (MQ=255)

                               aCTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACat                                                         >  1:2217032/1‑91 (MQ=255)

                                  ttATAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTCTATTAACattat                                                      <  1:3210235/91‑1 (MQ=255)

                                  ttAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACattat                                                      <  1:2311962/91‑1 (MQ=255)

                                     aaaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgt                                                   <  1:2894670/91‑1 (MQ=255)

                                     aaaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgt                                                   <  1:2938063/91‑1 (MQ=255)

                                      aaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgtt                                                  <  1:264535/91‑1 (MQ=255)

                                      aaTACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTAttgtt                                                  <  1:689580/91‑1 (MQ=255)

                                         aCGCAAAGAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGt                                               <  1:4002581/91‑1 (MQ=255)

                                           gCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAg                                             >  1:3616260/1‑91 (MQ=255)

                                            cAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTCATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGt                                            <  1:3300915/91‑1 (MQ=255)

                                             aaaaaaCGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGtt                                           <  1:81230/91‑1 (MQ=255)

                                             aaaaaaCGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGtt                                           <  1:1394134/91‑1 (MQ=255)

                                              taaaacggtaaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGttt                                          >  1:1873869‑M2/44‑91 (MQ=255)

                                              aaaaaCGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGttt                                          >  1:421664/1‑91 (MQ=255)

                                               aaaacggtaaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTg                                         >  1:1021779‑M2/43‑91 (MQ=255)

                                               AAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTg                                         <  1:2345870‑M1/91‑1 (MQ=255)

                                                 AACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGa                                       <  1:3654606‑M1/91‑1 (MQ=255)

                                                  acggtaaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGAt                                      >  1:2473089‑M2/40‑91 (MQ=255)

                                                  acggtaaactctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGAt                                      >  1:3293500‑M2/40‑91 (MQ=255)

                                                   CGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATc                                     >  1:1727469‑M1/1‑91 (MQ=255)

                                                    GGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCa                                    <  1:104111‑M1/91‑1 (MQ=255)

                                                     GTAAACCCTAATTCATATTATAGAATTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAg                                   <  1:59562‑M1/91‑1 (MQ=255)

                                                      TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                  <  1:4023919‑M1/91‑1 (MQ=255)

                                                      TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                  <  1:2675522‑M1/91‑1 (MQ=255)

                                                      TAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGt                                  >  1:1366073‑M1/1‑91 (MQ=255)

                                                        AACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTaa                                >  1:2895602‑M1/1‑91 (MQ=255)

                                                          ctctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAAcc                              >  1:2996991‑M2/32‑91 (MQ=255)

                                                           tctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCa                             >  1:2477718‑M2/31‑91 (MQ=255)

                                                           ccTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGGTGGTAGTTTGGATCAGTAACCa                             >  1:3673154/1‑91 (MQ=255)

                                                            ctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAt                            >  1:4120327‑M2/30‑91 (MQ=255)

                                                            ctataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAt                            >  1:3277116‑M2/30‑91 (MQ=255)

                                                             tAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCAtt                           <  1:2783537/91‑1 (MQ=255)

                                                              ataatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTg                          >  1:1268668‑M2/28‑91 (MQ=255)

                                                               taatatgaattagggtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGc                         >  1:3209994‑M2/27‑91 (MQ=255)

                                                               aTTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGc                         <  1:1143057/91‑1 (MQ=255)

                                                               aTTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGc                         >  1:601145/1‑91 (MQ=255)

                                                               aTTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGc                         >  1:2923824/1‑91 (MQ=255)

                                                                 tCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCtt                       <  1:1843542/91‑1 (MQ=255)

                                                                  cATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTg                      >  1:3751599/1‑91 (MQ=255)

                                                                    tattatAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTc                    <  1:3572454/91‑1 (MQ=255)

                                                                     attatAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTcc                   <  1:2037323/91‑1 (MQ=255)

                                                                        ataGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGt                >  1:1674260/1‑91 (MQ=255)

                                                                          agagTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGtat              <  1:2155263/91‑1 (MQ=255)

                                                                           gagTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGtata             <  1:1607447/91‑1 (MQ=255)

                                                                           gagTTTACCATTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGtata             >  1:2086645/1‑91 (MQ=255)

                                                                             gtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAAt           <  1:1734580‑M2/79‑1 (MQ=255)

                                                                             gtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAAt           <  1:2725725‑M2/79‑1 (MQ=255)

                                                                             gtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAAt           <  1:2889191‑M2/79‑1 (MQ=255)

                                                                             gtttaccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAAt           <  1:2889568‑M2/79‑1 (MQ=255)

                                                                                taccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCaa        >  1:1429534‑M2/10‑91 (MQ=255)

                                                                                taccgttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCaa        >  1:1128344‑M2/10‑91 (MQ=255)

                                                                                    gttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGt    <  1:4143546‑M2/86‑1 (MQ=255)

                                                                                    gttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGt    >  1:736069‑M2/6‑91 (MQ=255)

                                                                                     ttttATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGtt   >  1:528545‑M2/5‑91 (MQ=255)

TTTAAAAGTACTATAAAACGTAAACTTTGATACTTTAAAATACGCAAAAAACGGTAAACCCTAATTCATATTATAGAGTTTACCGTTTTATTTTTTAACTTGCATCATAGTTATATTAACATTATTGTTGGTAGTTTGGATCAGTAACCATTGCTTGTCCAGTATAATCAACCGTTA  >  USA300TCH1516_ALE/2489683‑2489859

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.