BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2569653 =	103 (1.050)	5 (0.060)	5/142	NT	6.1%	intergenic (+5/+87)	pbpX_2/USA300HOU_RS13235	Putative penicillin‑binding protein PbpX/UDP‑glucose 4‑epimerase
*	?	USA300TCH1516_ALE	2569712 =	63 (0.720)	5 (0.060)	5/142	NT	6.1%	intergenic (+64/+28)	pbpX_2/USA300HOU_RS13235	Putative penicillin‑binding protein PbpX/UDP‑glucose 4‑epimerase

Only 100 of 116 total aligned reads displayed.

CTTCATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCT  >  USA300TCH1516_ALE/2569622‑2569800

cTTCATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTa                                                                                          <  1:311405/91‑1 (MQ=255)

 aataTACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTAt                                                                                         <  1:3563569/88‑1 (MQ=255)

  tCATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTAtt                                                                                        >  1:2438296/1‑91 (MQ=255)

   cATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTc                                                                                       >  1:1491176/1‑91 (MQ=255)

   cATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTc                                                                                       <  1:2361851/91‑1 (MQ=255)

   cATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTc                                                                                       >  1:45287/1‑91 (MQ=255)

   cATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTc                                                                                       <  1:2361645/91‑1 (MQ=255)

       cAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTg                                                                                   <  1:415646/91‑1 (MQ=255)

       cAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTg                                                                                   <  1:3109250/91‑1 (MQ=255)

       cAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTg                                                                                   <  1:3035127/91‑1 (MQ=255)

        aaaGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGt                                                                                  <  1:2945415/91‑1 (MQ=255)

          aGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCGAGTCTTTATTCTTTGtat                                                                                >  1:1371804/1‑91 (MQ=255)

          aGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGtat                                                                                >  1:3755268/1‑91 (MQ=255)

          aGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGtat                                                                                >  1:499464/1‑91 (MQ=255)

            aTAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTatat                                                                              <  1:1721307/91‑1 (MQ=255)

               aCGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTaa                                                                           <  1:1079010/91‑1 (MQ=255)

               aCGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTaa                                                                           >  1:2243389/1‑91 (MQ=255)

               aCGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTGGTATATTaa                                                                           >  1:2241155/1‑91 (MQ=255)

                   aGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACgg                                                                       >  1:1553814/1‑91 (MQ=255)

                    gACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGa                                                                      >  1:2579867/1‑91 (MQ=255)

                      cATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATa                                                                    >  1:351745/1‑91 (MQ=255)

                        taataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATaaa                                                                  <  1:2468161/91‑1 (MQ=255)

                        taataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATaaa                                                                  <  1:2467374/91‑1 (MQ=255)

                         aataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAat                                                                 >  1:3844573/1‑91 (MQ=255)

                          ataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAatt                                                                <  1:1038304/91‑1 (MQ=255)

                          ataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAatt                                                                >  1:1422515/1‑91 (MQ=255)

                          ataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAatt                                                                <  1:806926/91‑1 (MQ=255)

                          ataaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAatt                                                                >  1:968346/1‑91 (MQ=255)

                           taaAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAatta                                                               <  1:2838154/91‑1 (MQ=255)

                            aaaaaaGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAattat                                                              <  1:79202/91‑1 (MQ=255)

                               AAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTCTATTCTTTGTATATTAAACGGATAAattattat                                                           <  1:3683349‑M1/91‑1 (MQ=255)

                                AAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAattattatt                                                          >  1:1416398‑M1/1‑91 (MQ=255)

                                AAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAattattatt                                                          <  1:198247‑M1/91‑1 (MQ=255)

                                AAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAattattatt                                                          <  1:679586‑M1/91‑1 (MQ=255)

                                 agacttggtcgaatcgtggatgatatattatcaaacgcacggctcgaacaagtctttATTCTTTGTATATTAAACGGATAAATTATTAttt                                                         >  1:1565687‑M2/58‑91 (MQ=255)

                                  gacttggtcgaatcgtggatgatatattatcaaacgcacggctcgaacaagtctttATTCTTTGTATATTAAACGGATAAATTATTATTTa                                                        >  1:2188930‑M2/57‑91 (MQ=255)

                                  GACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTa                                                        <  1:2530532‑M1/91‑1 (MQ=255)

                                  GACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTa                                                        <  1:3030944‑M1/91‑1 (MQ=255)

                                  GACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTa                                                        <  1:54703‑M1/91‑1 (MQ=255)

                                  GACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTa                                                        <  1:54714‑M1/91‑1 (MQ=255)

                                  GACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCCTTGTATATTAAACGGATAAATTATTATTTa                                                        <  1:2664870‑M1/91‑1 (MQ=255)

                                    CTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAAt                                                      <  1:1662936‑M1/91‑1 (MQ=255)

                                    CTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAAt                                                      <  1:1680001‑M1/91‑1 (MQ=255)

                                    CTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAAt                                                      <  1:1662921‑M1/91‑1 (MQ=255)

                                     TTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAAtt                                                     <  1:3246130‑M1/91‑1 (MQ=255)

                                     TTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAAtt                                                     <  1:1272212‑M1/91‑1 (MQ=255)

                                     TTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAAtt                                                     <  1:1272476‑M1/91‑1 (MQ=255)

                                      TGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTg                                                    >  1:4022269‑M1/1‑91 (MQ=255)

                                      TGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTg                                                    >  1:2985457‑M1/1‑91 (MQ=255)

                                      TGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTg                                                    <  1:1076945‑M1/91‑1 (MQ=255)

                                       ggtcgaatcgtggatgatatattatcaaacgcacggctcgaacaagtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTgg                                                   >  1:2731577‑M2/52‑91 (MQ=255)

                                       GTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTgg                                                   <  1:4108859‑M1/91‑1 (MQ=255)

                                       GTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTgg                                                   <  1:2668068‑M1/91‑1 (MQ=255)

                                       GTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTgg                                                   <  1:2091626‑M1/91‑1 (MQ=255)

                                            aGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCa                                              >  1:4055948/1‑91 (MQ=255)

                                            aGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCa                                              >  1:4055990/1‑91 (MQ=255)

                                             gCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCAt                                             <  1:3986447/91‑1 (MQ=255)

                                             gCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCAt                                             <  1:3047244/91‑1 (MQ=255)

                                             atcgtggatgatatattatcaaacgcacggctcgaacaagtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCAt                                             >  1:346927‑M2/46‑91 (MQ=255)

                                              ccGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATg                                            >  1:3373138/1‑91 (MQ=255)

                                              ccGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATg                                            <  1:2111495/91‑1 (MQ=255)

                                                gTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGcc                                          >  1:2753496/1‑91 (MQ=255)

                                                gTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTAATTAATTGGATTCATGcc                                          >  1:3619061/1‑91 (MQ=255)

                                                 tGCGTTTGATAATATATCATCCACGATTCGACTAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCa                                         <  1:3556799/91‑1 (MQ=255)

                                                 tGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCa                                         >  1:3348726/1‑91 (MQ=255)

                                                 tGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCa                                         >  1:1134376/1‑91 (MQ=255)

                                                 tGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCa                                         >  1:1327589/1‑91 (MQ=255)

                                                   cGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTTGATTCATGCCATc                                       >  1:3008530/1‑91 (MQ=255)

                                                       tGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTc                                   >  1:1361334/1‑91 (MQ=255)

                                                        gATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTcc                                  <  1:1823255/91‑1 (MQ=255)

                                                        gATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTcc                                  <  1:1428206/91‑1 (MQ=255)

                                                           aataTATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAg                               >  1:2931843/1‑91 (MQ=255)

                                                            atatatCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGt                              <  1:2853270/91‑1 (MQ=255)

                                                              atatCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGttt                            <  1:1182740/91‑1 (MQ=255)

                                                                atcatcCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGa                          <  1:3246997/91‑1 (MQ=255)

                                                                atcatcCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGa                          <  1:162569/91‑1 (MQ=255)

                                                                 tcatcCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGAt                         >  1:1257560/1‑91 (MQ=255)

                                                                 tcatcCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGAt                         >  1:2346400/1‑91 (MQ=255)

                                                                   atcCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATaa                       >  1:2423520/1‑91 (MQ=255)

                                                                    tcCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATaaa                      <  1:3177225/91‑1 (MQ=255)

                                                                     ccACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAAt                     <  1:1214705/91‑1 (MQ=255)

                                                                      cACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATc                    >  1:3615362/1‑91 (MQ=255)

                                                                      cACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATc                    <  1:1215019/91‑1 (MQ=255)

                                                                      cACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATc                    <  1:4128129/91‑1 (MQ=255)

                                                                      cACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATc                    <  1:360633/91‑1 (MQ=255)

                                                                         gATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCaga                 <  1:839005/91‑1 (MQ=255)

                                                                            tCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTa              <  1:3004656/91‑1 (MQ=255)

                                                                            tCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTa              <  1:1303141/91‑1 (MQ=255)

                                                                              gACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTacc            <  1:2637949/91‑1 (MQ=255)

                                                                               aCCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTacca           >  1:850711/1‑91 (MQ=255)

                                                                                ccAAGGCTTTATTCTTTGTATATTACACGGATAAATTATTATTTAATTGGATTAATGCCATCTTTCCAAGTTTGATAAATCAGAGTaccac          <  1:3866011/91‑1 (MQ=255)

                                                                                    gtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTg      <  1:2549078‑M2/85‑1 (MQ=255)

                                                                                    gtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTg      <  1:4057894‑M2/85‑1 (MQ=255)

                                                                                    gtctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTg      <  1:2893920‑M2/85‑1 (MQ=255)

                                                                                     tctttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTgc     <  1:2173744‑M2/86‑1 (MQ=255)

                                                                                     tctctATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTgc     <  1:3206095‑M2/86‑1 (MQ=255)

                                                                                       tttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTgcgc   <  1:1997109‑M2/88‑1 (MQ=255)

                                                                                       tttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTgcgc   <  1:3100682‑M2/88‑1 (MQ=255)

                                                                                       tttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGAACCACCTTgcgc   <  1:3177360‑M2/88‑1 (MQ=255)

                                                                                        ttATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCt  >  1:1270516‑M2/3‑91 (MQ=255)

CTTCATACAAAGATAACGAAGACATAATAAAAAAGACTTGTTCGAGCCGTGCGTTTGATAATATATCATCCACGATTCGACCAAGTCTTTATTCTTTGTATATTAAACGGATAAATTATTATTTAATTGGATTCATGCCATCTTTCCAAGTTTGATAAATCAGAGTACCACCTTGCGCT  >  USA300TCH1516_ALE/2569622‑2569800

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.