BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2665481 =	76 (0.770)	7 (0.080)	6/138	NT	10.1%	intergenic (‑108/+71)	USA300TCH1516_02535/sdhA	hypothetical protein/L‑serine dehydratase, alpha chain
*	?	USA300TCH1516_ALE	2665525 =	59 (0.700)	7 (0.080)	6/138	NT	10.1%	intergenic (‑152/+27)	USA300TCH1516_02535/sdhA	hypothetical protein/L‑serine dehydratase, alpha chain

Only 100 of 118 total aligned reads displayed.

TAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTT  >  USA300TCH1516_ALE/2665436‑2665615

tAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCtttt                                                                                           >  1:2170331/1‑91 (MQ=255)

tAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCtttt                                                                                           >  1:2170438/1‑91 (MQ=255)

tAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCtttt                                                                                           >  1:307449/1‑91 (MQ=255)

   tATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTa                                                                                        <  1:2925174/91‑1 (MQ=255)

     taaaaataattaatgagataacaataaaatattgataaaaAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATc                                                                                      >  1:2334035‑M1/41‑91 (MQ=255)

      gCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCa                                                                                     >  1:1726679/1‑91 (MQ=255)

      gCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCa                                                                                     <  1:1340988/91‑1 (MQ=255)

       cATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGTTCCAGACAGATGCTTCTTTTTTATCaa                                                                                    <  1:775751/91‑1 (MQ=255)

       cATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCaa                                                                                    <  1:1709351/91‑1 (MQ=255)

          tttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAatat                                                                                 >  1:2056762/1‑91 (MQ=255)

           ttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAtt                                                                                >  1:1354363/1‑91 (MQ=255)

           ttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAtt                                                                                >  1:1355215/1‑91 (MQ=255)

           ttCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATAtt                                                                                <  1:4117367/91‑1 (MQ=255)

                 atgagataacaataaaatattgataaaaaagaagcatctgtctggatcattagtaccagatagatgcttcttTTTTATCAACATTTTATTg                                                                          >  1:3966179‑M2/73‑91 (MQ=255)

                  aaTCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGt                                                                         >  1:1940041/1‑91 (MQ=255)

                        tCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTAtctc                                                                   >  1:4095537/1‑91 (MQ=255)

                         cAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCa                                                                  >  1:2029044/1‑91 (MQ=255)

                         cAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCa                                                                  <  1:1835614/91‑1 (MQ=255)

                         cAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCa                                                                  >  1:916619/1‑91 (MQ=255)

                          caataaaatgttgataaaaAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCat                                                                 >  1:3966179‑M1/20‑91 (MQ=255)

                          aaCTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCat                                                                 >  1:872952/1‑91 (MQ=255)

                           aCTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCatt                                                                <  1:2830692/91‑1 (MQ=255)

                           aCTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCatt                                                                <  1:1269625/91‑1 (MQ=255)

                              tcttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaat                                                             >  1:1020394/1‑91 (MQ=255)

                               cttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatt                                                            >  1:4041642/1‑91 (MQ=255)

                               cttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatt                                                            >  1:4041286/1‑91 (MQ=255)

                               cttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatt                                                            <  1:3676763/91‑1 (MQ=255)

                               cttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatt                                                            <  1:534342/91‑1 (MQ=255)

                                ttcAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCattaatta                                                           <  1:1023836/91‑1 (MQ=255)

                                  cAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAattatt                                                         >  1:668474/1‑91 (MQ=255)

                                  cAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAattatt                                                         >  1:667610/1‑91 (MQ=255)

                                    gagaTAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTAtttt                                                       >  1:1490609/1‑91 (MQ=255)

                                     agaTAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTAttttt                                                      <  1:1541369/91‑1 (MQ=255)

                                      gataaaaaagaagcatctgtctggatcattagtaccagatagatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTa                                                     >  1:2334035‑M2/52‑91 (MQ=255)

                                         aaTTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAAcc                                                  <  1:3051454/91‑1 (MQ=255)

                                         aaTTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAAcc                                                  <  1:4032214/91‑1 (MQ=255)

                                         aaTTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAAcc                                                  <  1:2123918/91‑1 (MQ=255)

                                          aTTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCa                                                 <  1:3290035/91‑1 (MQ=255)

                                             AAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCatat                                              <  1:1192991‑M1/91‑1 (MQ=255)

                                              AGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATc                                             <  1:604202‑M1/91‑1 (MQ=255)

                                              AGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATc                                             >  1:2312419‑M1/1‑91 (MQ=255)

                                               GAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCt                                            >  1:2130703‑M1/1‑91 (MQ=255)

                                               GAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCt                                            >  1:331253‑M1/1‑91 (MQ=255)

                                                aagcatctgtctggatcattagtaccagatagatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCtt                                           >  1:1012912‑M2/42‑91 (MQ=255)

                                                  GCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCa                                         <  1:311121‑M1/91‑1 (MQ=255)

                                                  GCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCa                                         <  1:239473‑M1/91‑1 (MQ=255)

                                                   catctgtctggatcattagtaccagatagatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAg                                        >  1:766861‑M2/39‑91 (MQ=255)

                                                   CATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAg                                        >  1:1250226‑M1/1‑91 (MQ=255)

                                                    ATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGc                                       <  1:2413501‑M1/91‑1 (MQ=255)

                                                      CTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtg                                     <  1:3581772‑M1/91‑1 (MQ=255)

                                                      CTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtg                                     <  1:3125839‑M1/91‑1 (MQ=255)

                                                      CTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtg                                     <  1:107245‑M1/91‑1 (MQ=255)

                                                      CTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtg                                     <  1:107282‑M1/91‑1 (MQ=255)

                                                       tgtctggatcattagtaccagatagatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtgt                                    >  1:1160791‑M2/35‑91 (MQ=255)

                                                       TATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtgt                                    >  1:485960‑M1/1‑91 (MQ=255)

                                                       TATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtgt                                    >  1:3041100‑M1/1‑91 (MQ=255)

                                                        atctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtgtg                                   <  1:207796/91‑1 (MQ=255)

                                                        atctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCtgtg                                   >  1:354956/1‑91 (MQ=255)

                                                         tctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGc                                  >  1:2663139/1‑91 (MQ=255)

                                                         tctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGc                                  <  1:1297513/91‑1 (MQ=255)

                                                         tctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGc                                  <  1:777489/91‑1 (MQ=255)

                                                         tctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGc                                  <  1:3359483/91‑1 (MQ=255)

                                                         tctGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGc                                  >  1:816088/1‑91 (MQ=255)

                                                           tggatcattagtaccagatagatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCa                                >  1:3250721‑M2/31‑91 (MQ=255)

                                                           tGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCa                                >  1:2827875/1‑91 (MQ=255)

                                                            ggTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCaa                               >  1:38254/1‑91 (MQ=255)

                                                              tACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAg                             >  1:253685/1‑91 (MQ=255)

                                                               aCTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGa                            <  1:1654414/91‑1 (MQ=255)

                                                                 tAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGAtt                          >  1:1033170/1‑91 (MQ=255)

                                                                 tAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGAtt                          >  1:3773146/1‑91 (MQ=255)

                                                                 tAATGATCCAGACAGATGCTTCTTTTTTATCAATATCTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGAtt                          >  1:2944855/1‑91 (MQ=255)

                                                                  aaTGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGAttt                         <  1:3917709/91‑1 (MQ=255)

                                                                  aaTGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGAttt                         >  1:2514586/1‑91 (MQ=255)

                                                                      aTCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACg                     >  1:1107103/1‑91 (MQ=255)

                                                                        ccAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGtt                   >  1:1654183/1‑91 (MQ=255)

                                                                         cagacagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGttt                  <  1:3610527/91‑1 (MQ=255)

                                                                           gacagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTaa                <  1:1798457/91‑1 (MQ=255)

                                                                           gacagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTaa                <  1:1836401/91‑1 (MQ=255)

                                                                           gacagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTaa                <  1:1555402/91‑1 (MQ=255)

                                                                           gacagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTaa                <  1:4122883/91‑1 (MQ=255)

                                                                           gacagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTaa                <  1:2518278/91‑1 (MQ=255)

                                                                            acagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAAt               <  1:2929395/91‑1 (MQ=255)

                                                                             cagaTGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAAtt              <  1:3991763/91‑1 (MQ=255)

                                                                              agatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTGTTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTg             <  1:3290145‑M2/80‑1 (MQ=255)

                                                                               gatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGc            >  1:4701‑M2/11‑91 (MQ=255)

                                                                               gatgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGc            >  1:3674289‑M2/11‑91 (MQ=255)

                                                                                 tgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCtt          >  1:1221981‑M2/9‑91 (MQ=255)

                                                                                 tgcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCtt          >  1:2873275‑M2/9‑91 (MQ=255)

                                                                                  gcttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTc         <  1:2344874‑M2/84‑1 (MQ=255)

                                                                                   cttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTACCCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCg        <  1:186846‑M2/85‑1 (MQ=255)

                                                                                   cttcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCg        >  1:2187748‑M2/7‑91 (MQ=255)

                                                                                     tcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGcc      >  1:526649‑M2/5‑91 (MQ=255)

                                                                                     tcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGcc      <  1:1523703‑M2/87‑1 (MQ=255)

                                                                                     tcttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGcc      <  1:3096939‑M2/87‑1 (MQ=255)

                                                                                      cttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCa     <  1:1359244‑M2/88‑1 (MQ=255)

                                                                                       ttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAg    <  1:2102736‑M2/89‑1 (MQ=255)

                                                                                       ttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAg    <  1:2102046‑M2/89‑1 (MQ=255)

                                                                                       ttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAg    <  1:902228‑M2/89‑1 (MQ=255)

                                                                                       ttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAg    <  1:902258‑M2/89‑1 (MQ=255)

                                                                                       ttTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAg    <  1:902283‑M2/89‑1 (MQ=255)

TAGTATGCATTTTCCATAAATCTTTCAACTTCTTCAGAGATAATTAAGAAGCATCTATCTGGTACTAATGATCCAGACAGATGCTTCTTTTTTATCAATATTTTATTGTTATCTCATTAATTATTTTTAACCATATCTTCAGCTGTGCCAAAGATTTTACGTTTAATTGCTTCGCCAGTT  >  USA300TCH1516_ALE/2665436‑2665615

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.