BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 1692	388 (1.110)	21 (0.070)	7/144	NT	5.4%	intergenic (+477/‑379)	repA/USA300HOU_pUSA300HOUMR0003	replication protein A/hypothetical protein
*	?	CP000731	= 1696	387 (1.230)	21 (0.070)	7/144	NT	5.4%	intergenic (+481/‑375)	repA/USA300HOU_pUSA300HOUMR0003	replication protein A/hypothetical protein

Only 100 of 548 total aligned reads displayed.

CAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAGGAAT  >  CP000731/1606‑1786

 aaaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGa                                                                                           <  1:3636612‑M2/91‑2 (MQ=255)

 aaaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGa                                                                                           <  1:1373549‑M2/91‑2 (MQ=255)

  aaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaa                                                                                          <  1:3493802‑M2/91‑3 (MQ=255)

   ttttgtgacaCTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaat                                                                                         <  1:1682068‑M2/88‑4 (MQ=255)

   aaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaat                                                                                         >  1:63071‑M2/1‑88 (MQ=255)

    tttgtgacACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaatg                                                                                        <  1:726834‑M2/89‑5 (MQ=255)

    aGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaatg                                                                                        <  1:1113601‑M2/91‑5 (MQ=255)

      tgtgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaatgat                                                                                      <  1:1744087‑M2/91‑7 (MQ=255)

        tgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaatgatag                                                                                    >  1:1248869‑M2/1‑83 (MQ=255)

        tgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaatgatag                                                                                    <  1:3072608‑M2/91‑9 (MQ=255)

        tgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaatcatag                                                                                    <  1:3454678‑M2/91‑9 (MQ=255)

         gACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGc                                                                                   >  1:3367463/1‑91 (MQ=255)

          acacTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGTATGATAGCa                                                                                  <  1:2091128/91‑1 (MQ=255)

          acacTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCa                                                                                  >  1:3554308/1‑91 (MQ=255)

          acacTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCa                                                                                  >  1:1974036/1‑91 (MQ=255)

             cTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAt                                                                               <  1:231202/91‑1 (MQ=255)

              tACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAtt                                                                              <  1:2259311/91‑1 (MQ=255)

                 aGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTcc                                                                           <  1:2013633/91‑1 (MQ=255)

                 aGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTcc                                                                           >  1:1875288/1‑91 (MQ=255)

                  gCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTccc                                                                          <  1:2738842/91‑1 (MQ=255)

                  gCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTccc                                                                          <  1:1452188/91‑1 (MQ=255)

                   cTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCt                                                                         >  1:2639717/1‑91 (MQ=255)

                     ttGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTa                                                                       >  1:3737508/1‑91 (MQ=255)

                      tGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTAt                                                                      <  1:576339/91‑1 (MQ=255)

                      tGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTAt                                                                      >  1:1180097/1‑91 (MQ=255)

                       gTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATg                                                                     >  1:3778738/1‑91 (MQ=255)

                       gTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATg                                                                     >  1:1522666/1‑91 (MQ=255)

                        tATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGc                                                                    <  1:899544/91‑1 (MQ=255)

                          tGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGctc                                                                  >  1:689915/1‑91 (MQ=255)

                            atatCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCtt                                                                >  1:1638186/1‑91 (MQ=255)

                             tatCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTa                                                               <  1:2036119/91‑1 (MQ=255)

                             tatCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTa                                                               >  1:2921229/1‑91 (MQ=255)

                             tatCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTa                                                               <  1:1511659/91‑1 (MQ=255)

                               tCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACg                                                             <  1:130027/91‑1 (MQ=255)

                                cACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACgg                                                            <  1:2777000/91‑1 (MQ=255)

                                cACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACgg                                                            <  1:1215784/91‑1 (MQ=255)

                                  cTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGgag                                                          <  1:872312/91‑1 (MQ=255)

                                  cTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGgag                                                          >  1:1140764/1‑91 (MQ=255)

                                   tttAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGgaga                                                         >  1:3254483/1‑91 (MQ=255)

                                     tAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGAtt                                                       >  1:3680171/1‑91 (MQ=255)

                                      aaaaTAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGAttt                                                      >  1:3321605/1‑91 (MQ=255)

                                        aaTAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTa                                                    <  1:3161245/91‑1 (MQ=255)

                                        aaTAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTa                                                    >  1:1069088/1‑91 (MQ=255)

                                            aCTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGt                                                >  1:2449521/1‑91 (MQ=255)

                                            aCTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGt                                                >  1:3824541/1‑91 (MQ=255)

                                            aCTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGt                                                >  1:294858/1‑91 (MQ=255)

                                            aCTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGt                                                <  1:115843/91‑1 (MQ=255)

                                            aCTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGt                                                >  1:258113/1‑91 (MQ=255)

                                              ttAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGtta                                              >  1:1590076/1‑91 (MQ=255)

                                               tAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaa                                             >  1:3001686/1‑91 (MQ=255)

                                                aaaaCCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaaa                                            <  1:3970400/91‑1 (MQ=255)

                                                aaaaCCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaaa                                            >  1:1933833/1‑91 (MQ=255)

                                                 aaaCCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaaat                                           >  1:2712077/1‑91 (MQ=255)

                                                   aCCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaaatta                                         <  1:1765248/91‑1 (MQ=255)

                                                      cTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTaaaa                                      >  1:2284320/1‑91 (MQ=255)

                                                       ttGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAt                                     <  1:531278/91‑1 (MQ=255)

                                                        tGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAtt                                    >  1:1912870/1‑91 (MQ=255)

                                                         ggAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAttt                                   >  1:4081941/1‑91 (MQ=255)

                                                         ggAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAttt                                   <  1:3951901/91‑1 (MQ=255)

                                                          gAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTc                                  <  1:608775/91‑1 (MQ=255)

                                                          gAATGGCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTGTGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTc                                  <  1:3861897/91‑1 (MQ=255)

                                                           aaTGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCt                                 <  1:305746/91‑1 (MQ=255)

                                                           aaTGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCt                                 >  1:490412/1‑91 (MQ=255)

                                                            aTGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTa                                <  1:2054280/91‑1 (MQ=255)

                                                                cTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGtt                            >  1:3022/1‑91 (MQ=255)

                                                                cTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGtt                            >  1:1571672/1‑91 (MQ=255)

                                                                 tGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGttt                           <  1:2355854/91‑1 (MQ=255)

                                                                 tGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGttt                           >  1:1424478/1‑91 (MQ=255)

                                                                   gcaaggccagatCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGttttt                         >  1:4013793‑M2/13‑91 (MQ=255)

                                                                   gCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGttttt                         >  1:751436/1‑91 (MQ=255)

                                                                    ccTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTg                        <  1:2392981/91‑1 (MQ=255)

                                                                     cTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGa                       >  1:3303791/1‑91 (MQ=255)

                                                                     aaggCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGa                       >  1:951068/4‑91 (MQ=255)

                                                                     aaggCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGa                       >  1:241254/4‑91 (MQ=255)

                                                                     aaggCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGa                       >  1:2623535/4‑91 (MQ=255)

                                                                        gCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATaa                    >  1:3234452/1‑91 (MQ=255)

                                                                         ccAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAg                   >  1:2904963/1‑91 (MQ=255)

                                                                           aGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGaa                 <  1:3129603/91‑1 (MQ=255)

                                                                            gATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGaaa                >  1:2133654/1‑91 (MQ=255)

                                                                            gATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGaaa                >  1:3086583/1‑91 (MQ=255)

                                                                            gATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGaaa                >  1:2884772/1‑91 (MQ=255)

                                                                            gATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGaaa                <  1:2841040/91‑1 (MQ=255)

                                                                            gATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGaaa                >  1:4121793/1‑91 (MQ=255)

                                                                              tCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAg              >  1:2189577/1‑91 (MQ=255)

                                                                              tCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAg              >  1:2425846/1‑91 (MQ=255)

                                                                               cTATCATTTTTGaatgatagatctggcaaggccagacattccaagggttttaagttattttaaagtgatatcatacaaagctgtagtgtca             <  1:3899216‑M2/91‑80 (MQ=255)

                                                                               cTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGc             >  1:3919322/1‑91 (MQ=255)

                                                                                tATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGcc            <  1:1802383/91‑1 (MQ=255)

                                                                                  tCATTTTTGaatgatagatctggcaaggccagacattccaagggttttaagttattttaaagtgatatcatacaaagctgtagtgtcacac          <  1:4055307‑M2/91‑83 (MQ=255)

                                                                                  tCATTTTTGaatgatagatctggcaaggccagacattccaagggttttaagttattttaaagtgatatcatacaaagctgtagtgtcacac          <  1:83202‑M2/91‑83 (MQ=255)

                                                                                  tCATTTTTGAATGATAGCAAATTTCCCTTATGTTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTAGATAAGAAAAGCCCt          <  1:3542151/91‑1 (MQ=255)

                                                                                  tCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCt          >  1:1898866/1‑91 (MQ=255)

                                                                                  tCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCt          >  1:100163/1‑91 (MQ=255)

                                                                                    aTTTTTGAATGGTAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGc        <  1:3760326/91‑1 (MQ=255)

                                                                                    aTTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGc        <  1:654559/91‑1 (MQ=255)

                                                                                    aTTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGc        <  1:3373224/91‑1 (MQ=255)

                                                                                     tttttGaatgatagatctggcaaggccagacattccaagggttttaagttattttaaagtgatatcatacaaagctgtagtgtcacacttt       <  1:426807‑M2/91‑86 (MQ=255)

                                                                                       tttGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAgg     <  1:2681954/91‑1 (MQ=255)

                                                                                         tGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAGGaa   <  1:2241238/91‑1 (MQ=255)

                                                                                         tGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAGGaa   <  1:147391/91‑1 (MQ=255)

CAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAAAAGCCCTGCAGGAAT  >  CP000731/1606‑1786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.