BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	11093 =	374 (1.070)	58 (0.180)	13/146	NT	15.9%	intergenic (+98/‑166)	blaI/USA300HOU_pUSA300HOUMR0014	beta‑lactamase regulator BlaI/recombinase
*	?	CP000731	11129 =	270 (0.840)	58 (0.180)	13/146	NT	15.9%	intergenic (+134/‑130)	blaI/USA300HOU_pUSA300HOUMR0014	beta‑lactamase regulator BlaI/recombinase

Only 100 of 443 total aligned reads displayed.

GACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCAA  >  CP000731/11039‑11219

gACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCtt                                                                                            >  1:1943761/1‑91 (MQ=255)

 aCTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTg                                                                                           <  1:2668805/91‑1 (MQ=255)

  ctctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGt                                                                                          >  1:88903/1‑91 (MQ=255)

  ctctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGt                                                                                          <  1:4065049/91‑1 (MQ=255)

  ctctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGt                                                                                          <  1:2421308/91‑1 (MQ=255)

  ctctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGt                                                                                          >  1:2804334/1‑91 (MQ=255)

  ctctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGt                                                                                          >  1:2856387/1‑91 (MQ=255)

   tctTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGtt                                                                                         <  1:2203010/91‑1 (MQ=255)

      tattaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGttttt                                                                                      >  1:1779945/1‑91 (MQ=255)

      tattaAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGttttt                                                                                      <  1:3929354/91‑1 (MQ=255)

         taAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGt                                                                                   >  1:1049532/1‑91 (MQ=255)

          aaaTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTc                                                                                  <  1:3254568/91‑1 (MQ=255)

          aaaTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTc                                                                                  <  1:3298963/91‑1 (MQ=255)

          aaaTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTc                                                                                  <  1:3607707/91‑1 (MQ=255)

            aTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTa                                                                                >  1:3016441/1‑91 (MQ=255)

            aTTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTa                                                                                <  1:2460932/91‑1 (MQ=255)

            aTTAGTTGTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTa                                                                                <  1:2067901/91‑1 (MQ=255)

              tAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTaaa                                                                              >  1:639607/1‑91 (MQ=255)

                 ttttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaa                                                                           <  1:1279661/91‑1 (MQ=255)

                 ttttGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaa                                                                           <  1:1828825/91‑1 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagta                                                                        >  1:1417817/1‑91 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagta                                                                        <  1:3092925/91‑1 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagta                                                                        >  1:3161496/1‑91 (MQ=255)

                    tGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagta                                                                        <  1:1739740/91‑1 (MQ=255)

                     gTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAAtaagtaa                                                                       >  1:915313/1‑91 (MQ=255)

                        tgtaatacttacttatttagacaaaaaacaagagtgtccagaaaataaccattttctgtacactctTGTTTTTTGTCTAAATAagtaagta                                                                    <  1:3661038‑M2/25‑1 (MQ=255)

                         aTGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAt                                                                   <  1:486893/91‑1 (MQ=255)

                          tGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAtt                                                                  >  1:3120228/1‑91 (MQ=255)

                          tGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTAtt                                                                  >  1:1712798/1‑91 (MQ=255)

                           gACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTa                                                                 <  1:2258511/91‑1 (MQ=255)

                            aCATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTAc                                                                >  1:3725840/1‑91 (MQ=255)

                             cATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACa                                                               >  1:2123485/1‑91 (MQ=255)

                               tttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATa                                                             <  1:2764552/91‑1 (MQ=255)

                               tttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATa                                                             >  1:3809191/1‑91 (MQ=255)

                                ttcaaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAg                                                            >  1:2903146/4‑91 (MQ=255)

                                ttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAg                                                            <  1:3045867/91‑1 (MQ=255)

                                ttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAg                                                            <  1:3046636/91‑1 (MQ=255)

                                ttAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAg                                                            <  1:1539149/91‑1 (MQ=255)

                                  aaaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGaa                                                          >  1:375744/1‑91 (MQ=255)

                                   aaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAt                                                         >  1:2879413/1‑91 (MQ=255)

                                   aaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAt                                                         <  1:1882994/91‑1 (MQ=255)

                                   aaaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAt                                                         >  1:1584010/1‑91 (MQ=255)

                                    aaTATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAAtt                                                        <  1:3361141/91‑1 (MQ=255)

                                     atatatTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTa                                                       >  1:3840521/1‑91 (MQ=255)

                                     atatatTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTa                                                       <  1:2445432/91‑1 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    >  1:1492800/1‑91 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    <  1:511727/91‑1 (MQ=255)

                                        tattatTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgt                                                    >  1:3410329/1‑91 (MQ=255)

                                         attattAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTAtgtg                                                   <  1:4047874/91‑1 (MQ=255)

                                           tattaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGtt                                                 <  1:2221133/91‑1 (MQ=255)

                                            attaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTc                                                >  1:2541141/1‑91 (MQ=255)

                                            attaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTACGTGTTc                                                <  1:2014093/91‑1 (MQ=255)

                                             ttaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCa                                               <  1:365858/91‑1 (MQ=255)

                                             ttaAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCa                                               <  1:861011/91‑1 (MQ=255)

                                             caaaaaacaAGAGTGTACAGAAAATGGTTATTTTCTGGACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCa                                               <  1:2991669‑M1/82‑1 (MQ=255)

                                                  gATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAc                                          >  1:3498598/1‑91 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        <  1:3932538/91‑1 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        <  1:3552244/91‑1 (MQ=255)

                                                    tGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAAccc                                        <  1:1116962/91‑1 (MQ=255)

                                                     gagaGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCca                                       >  1:733642/1‑91 (MQ=255)

                                                      AGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaa                                      <  1:126847‑M1/91‑1 (MQ=255)

                                                       gagtgtacagaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaac                                     >  1:81569‑M2/36‑91 (MQ=255)

                                                       gagtgtacagaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaac                                     >  1:1909318‑M2/36‑91 (MQ=255)

                                                       GAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaac                                     >  1:77921‑M1/1‑91 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAGGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   <  1:1677409‑M1/91‑1 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   >  1:414005‑M1/1‑91 (MQ=255)

                                                         GTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCcaacaa                                   <  1:2787250‑M1/91‑1 (MQ=255)

                                                           GTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaa                                 >  1:258545‑M1/1‑91 (MQ=255)

                                                            TCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaaa                                <  1:2405076‑M1/91‑1 (MQ=255)

                                                            TCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACaaaaa                                >  1:2336324‑M1/1‑91 (MQ=255)

                                                              cagaaaatggttattttctggacactccTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAACTATGTGTTCAACAACCCAACAAAAAAt                              >  1:130896‑M2/29‑91 (MQ=255)

                                                              cAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAAt                              <  1:566431/91‑1 (MQ=255)

                                                                gaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            >  1:115355‑M2/27‑91 (MQ=255)

                                                                gaaaatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCt                            >  1:1180846‑M2/27‑91 (MQ=255)

                                                                   aatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  1:1009256‑M2/24‑91 (MQ=255)

                                                                   aatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  1:1762024‑M2/24‑91 (MQ=255)

                                                                   aatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         >  1:2274478‑M2/24‑91 (MQ=255)

                                                                   aatggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCCATg                         >  1:3075047‑M2/24‑91 (MQ=255)

                                                                   aaTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATg                         <  1:2718199/91‑1 (MQ=255)

                                                                    atggttattttctggacactctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGt                        >  1:1291581‑M2/23‑91 (MQ=255)

                                                                    aTAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGt                        <  1:686062/91‑1 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAACATCTATGtt                       >  1:3970754/1‑91 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  1:2733930/1‑91 (MQ=255)

                                                                     tAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGtt                       >  1:2141509/1‑91 (MQ=255)

                                                                       gttaTTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTca                     >  1:1446635/4‑91 (MQ=255)

                                                                        ccATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAACATCTATGTTcac                    <  1:3175065/91‑1 (MQ=255)

                                                                         cATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTcaca                   <  1:151126/91‑1 (MQ=255)

                                                                         cATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTcaca                   >  1:2359261/1‑91 (MQ=255)

                                                                         cATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTcaca                   <  1:3230214/91‑1 (MQ=255)

                                                                          aTTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaa                  >  1:2818503/1‑91 (MQ=255)

                                                                          aTTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACaa                  <  1:2327559/91‑1 (MQ=255)

                                                                             ttCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAG               <  1:3267893‑M1/91‑1 (MQ=255)

                                                                                tGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACC            >  1:2643105‑M1/1‑91 (MQ=255)

                                                                                 gTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCT           <  1:1210367‑M1/91‑1 (MQ=255)

                                                                                 gTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCT           <  1:42923‑M1/91‑1 (MQ=255)

                                                                                  tACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTC          <  1:259611‑M1/91‑1 (MQ=255)

                                                                                     actctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTa       <  1:1085942‑M2/86‑1 (MQ=255)

                                                                                      ctctTGTTTTTTGTCTAAATAAGTATGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTaa      <  1:3872356‑M2/87‑1 (MQ=255)

                                                                                       tctTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAAt     <  1:2954431‑M2/88‑1 (MQ=255)

                                                                                          tGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCaa  <  1:1623057/91‑1 (MQ=255)

GACTCTTATTAAATTAGTTTTGTTAATGACATTTAAAATATATTATTAAAGATGAGAGTGTCCAGAAAATAACCATTTTCTGTACACTCTTGTTTTTTGTCTAAATAAGTAAGTATTACATAGAATTATGTGTTCAAAAACCCAACAAAAAATCTATGTTCACAAAAGACCTCGTAATCAA  >  CP000731/11039‑11219

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.