BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	11951 =	356 (1.020)	33 (0.110)	12/134	NT	10.7%	intergenic (+114/+109)	USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015	recombinase/hypothetical protein
*	?	CP000731	11987 =	254 (0.860)	33 (0.110)	12/134	NT	10.7%	intergenic (+150/+73)	USA300HOU_pUSA300HOUMR0014/USA300HOU_pUSA300HOUMR0015	recombinase/hypothetical protein

Only 100 of 457 total aligned reads displayed.

ACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATT  >  CP000731/11897‑12077

aCAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTtaa                                                                                            <  1:3835230/91‑1 (MQ=255)

 cAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTtaat                                                                                           >  1:1912185/1‑91 (MQ=255)

  aaaGACTTTGATTCAATGTCACTCGCTGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTcaata                                                                                          <  1:3861627/91‑1 (MQ=255)

   aaGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTtaataa                                                                                         <  1:65553/91‑1 (MQ=255)

    ttatattaaaaaagcgtacgaatttgtacgcttttttcttgtgttattatTAAAATCTCATAATATTTTCCTGTTATGAGATTTtaataat                                                                                        >  1:4071746‑M1/51‑91 (MQ=255)

       cTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAac                                                                                     >  1:303868/1‑91 (MQ=255)

       cTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAac                                                                                     >  1:1416614/1‑91 (MQ=255)

         ttGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAacac                                                                                   <  1:3431321/91‑1 (MQ=255)

          taaaaaagcgtacgaatttgtacgcttttttcttgtgttattatTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAAcaca                                                                                  >  1:1765184‑M1/45‑91 (MQ=255)

           gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACaa                                                                                 >  1:1036404/1‑91 (MQ=255)

           gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACaa                                                                                 >  1:2085264/1‑91 (MQ=255)

           gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACaa                                                                                 <  1:1095601/91‑1 (MQ=255)

           gATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACaa                                                                                 <  1:2960258/91‑1 (MQ=255)

             ttCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGa                                                                               <  1:3725860/91‑1 (MQ=255)

              tCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGaa                                                                              <  1:4088419/91‑1 (MQ=255)

                aaTGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGaaaa                                                                            >  1:3233308/1‑91 (MQ=255)

                 aTGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGaaaaa                                                                           >  1:818189/1‑91 (MQ=255)

                   gTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAg                                                                         <  1:3671106/91‑1 (MQ=255)

                      aCTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGt                                                                      <  1:1951577/91‑1 (MQ=255)

                      aCTCCATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGt                                                                      >  1:3278942/1‑91 (MQ=255)

                       cTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTa                                                                     >  1:2727957/1‑91 (MQ=255)

                        tCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAGCACAAGAAAAAAGCGTAc                                                                    <  1:2368580/91‑1 (MQ=255)

                           aTGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACaaa                                                                 <  1:278458/91‑1 (MQ=255)

                             gTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCGTAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAAtt                                                               <  1:1489256/91‑1 (MQ=255)

                             gTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAAtt                                                               <  1:975430/91‑1 (MQ=255)

                             gTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAAtt                                                               <  1:1295513/91‑1 (MQ=255)

                               aaaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCg                                                             <  1:2849830/91‑1 (MQ=255)

                               aaaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCg                                                             <  1:111868/91‑1 (MQ=255)

                                aaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAAtttgt                                                            <  1:3253685/91‑4 (MQ=255)

                                aaaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGt                                                            <  1:457032/91‑1 (MQ=255)

                                 aaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTa                                                           <  1:11942/91‑1 (MQ=255)

                                 aaGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTa                                                           >  1:2302662/1‑91 (MQ=255)

                                   gagaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTGCGAATTTGTACg                                                         <  1:3197435/91‑1 (MQ=255)

                                   gagaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACg                                                         >  1:2554370/1‑91 (MQ=255)

                                   gagaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCATACAAATTCGTACg                                                         <  1:3949667/91‑1 (MQ=255)

                                    agaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                        <  1:1452143/91‑1 (MQ=255)

                                    agaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                        <  1:3911276/91‑1 (MQ=255)

                                    agaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                        <  1:4123055/91‑1 (MQ=255)

                                    agaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                        <  1:739124/91‑1 (MQ=255)

                                    agaCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACGAATTTGTACGc                                                        <  1:2017133/91‑1 (MQ=255)

                                      aCGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCtt                                                      >  1:772474/1‑91 (MQ=255)

                                       cGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCttt                                                     >  1:2813979/1‑91 (MQ=255)

                                       cGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCttt                                                     >  1:2454918/1‑91 (MQ=255)

                                       cGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCttt                                                     >  1:1062685/1‑91 (MQ=255)

                                        gTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTAAAAATTCGTACGCtttt                                                    >  1:1386978/1‑91 (MQ=255)

                                             gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaat                                               >  1:1662873/1‑91 (MQ=255)

                                             gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaat                                               <  1:1014646/91‑1 (MQ=255)

                                             gACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaat                                               <  1:2178669/91‑1 (MQ=255)

                                              aCAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaata                                              <  1:163386/91‑1 (MQ=255)

                                               cAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatat                                             <  1:3979335/91‑1 (MQ=255)

                                               cAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatat                                             <  1:1702842/91‑1 (MQ=255)

                                               cAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatat                                             >  1:1146053/1‑91 (MQ=255)

                                               cAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatat                                             >  1:2562673/1‑91 (MQ=255)

                                                 gCGTCTAAAATCTCACAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAACAGCGTACAAATTCGTACGCTTTTTtaatataa                                           >  1:3543775/1‑91 (MQ=255)

                                                 attattaaaatctcataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataa                                           >  1:2883633‑M2/42‑91 (MQ=255)

                                                  cGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataat                                          >  1:1834038/1‑91 (MQ=255)

                                                   gTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTtaatataata                                         >  1:2687832/1‑91 (MQ=255)

                                                    tCTAGAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                        <  1:3462772/91‑1 (MQ=255)

                                                    tCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATAc                                        <  1:621337/91‑1 (MQ=255)

                                                      TAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCt                                      <  1:212609‑M1/91‑1 (MQ=255)

                                                       aaaatctcataacaggaaaatattatgagattttaATCATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                     >  1:3303717‑M2/36‑91 (MQ=255)

                                                       AAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTg                                     <  1:3102292‑M1/91‑1 (MQ=255)

                                                         AATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGtt                                   <  1:180139‑M1/91‑1 (MQ=255)

                                                          atctcataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGttt                                  >  1:2882165‑M2/33‑91 (MQ=255)

                                                          atctcataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGttt                                  >  1:2045091‑M2/33‑91 (MQ=255)

                                                          ATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGttt                                  >  1:3507176‑M1/1‑91 (MQ=255)

                                                            ctcataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCa                                >  1:56800‑M2/31‑91 (MQ=255)

                                                            CTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCa                                <  1:133936‑M1/91‑1 (MQ=255)

                                                             tcataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCAc                               >  1:3602290‑M2/30‑91 (MQ=255)

                                                              cataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACt                              >  1:769583‑M2/29‑91 (MQ=255)

                                                              cataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACt                              >  1:300188‑M2/29‑91 (MQ=255)

                                                              cataacaggaaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACt                              >  1:927057‑M2/29‑91 (MQ=255)

                                                              cataacaggaaaatattatgagattttaATAATAACACAAGAAAAAACCGTACAAATTCGTACGCTTTTTTAATATAGTACCTGTTTCACt                              >  1:4149520‑M2/29‑91 (MQ=255)

                                                               ATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTa                             <  1:2205397‑M1/91‑1 (MQ=255)

                                                               ATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTa                             >  1:3883453‑M1/1‑91 (MQ=255)

                                                                   tatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                         <  1:3696749/91‑1 (MQ=255)

                                                                   tatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGa                         <  1:545781/91‑1 (MQ=255)

                                                                   tatTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACACTTTTTTAATATAATACCTGTTTCACTAATGa                         <  1:1478560/91‑1 (MQ=255)

                                                                     ttttCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAAc                       <  1:2526116/91‑1 (MQ=255)

                                                                      tttCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACg                      >  1:2906342/1‑91 (MQ=255)

                                                                       aaaatattatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGt                     >  1:3387855‑M2/20‑91 (MQ=255)

                                                                         ccTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGttt                   <  1:3797720/91‑1 (MQ=255)

                                                                          cTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGtttt                  >  1:1883183/1‑91 (MQ=255)

                                                                          cTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGtttt                  >  1:2747277/1‑91 (MQ=255)

                                                                           tGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTa                 <  1:2668957/91‑1 (MQ=255)

                                                                             ttatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg               <  1:3412256‑M2/78‑1 (MQ=255)

                                                                             ttatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg               <  1:3258880‑M2/78‑1 (MQ=255)

                                                                             ttatgagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAg               <  1:84836‑M2/78‑1 (MQ=255)

                                                                                 gagattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATc           <  1:2280792‑M2/82‑1 (MQ=255)

                                                                                  agattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCt          >  1:2378393‑M2/9‑91 (MQ=255)

                                                                                   gattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCtt         <  1:3356498‑M2/84‑1 (MQ=255)

                                                                                   gattttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCtt         <  1:872959‑M2/84‑1 (MQ=255)

                                                                                    attttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtc        <  1:2966564‑M2/85‑1 (MQ=255)

                                                                                    attttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtc        >  1:3140235‑M2/7‑91 (MQ=255)

                                                                                     ttttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtca       <  1:277571‑M2/86‑1 (MQ=255)

                                                                                      tttaATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtcat      <  1:1236662‑M2/87‑1 (MQ=255)

                                                                                        taATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTtcatca    >  1:1598916‑M2/3‑91 (MQ=255)

                                                                                         aATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTcatcat   <  1:3075835‑M2/90‑1 (MQ=255)

                                                                                          ataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt  >  1:1734537/1‑91 (MQ=255)

                                                                                          ataataaCACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCAtt  <  1:3456235/91‑1 (MQ=255)

ACAAAGACTTTGATTCAATGTCACTCGATGTAAAAGAGACGTTCTGACAGCGTCTAAAATCTCATAATATTTTCCTGTTATGAGATTTTAATAATAACACAAGAAAAAAGCGTACAAATTCGTACGCTTTTTTAATATAATACCTGTTTCACTAATGAACGTTTTAAGTATCTTCATCATT  >  CP000731/11897‑12077

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.