| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 17199 | 253 (0.720) | 20 (0.070) | 11/138 | NT | 7.8% | intergenic (‑138/+109) | USA300HOU_pUSA300HOUMR0021/USA300HOU_pUSA300HOUMR0023 | IS431 mec transposase/bacitracin ABC ATP binding cassette transporter, membrane protein |
| ? | CP000731 | = 17213 | 254 (0.840) | intergenic (‑152/+95) | USA300HOU_pUSA300HOUMR0021/USA300HOU_pUSA300HOUMR0023 | IS431 mec transposase/bacitracin ABC ATP binding cassette transporter, membrane protein | |||||
Only 100 of 343 total aligned reads displayed.
ACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTCTCCT > CP000731/17123‑17303 | cTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCt > 1:377769‑M2/1‑90 (MQ=255) gTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgt > 1:1669044‑M2/1‑88 (MQ=255) gTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgt > 1:1807274‑M2/1‑88 (MQ=255) tATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgtt > 1:1947069‑M2/1‑87 (MQ=255) aTTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttg < 1:977286‑M2/91‑6 (MQ=255) aTTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttg < 1:91496‑M2/91‑6 (MQ=255) tACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgat > 1:3931502‑M2/1‑84 (MQ=255) tACCACATTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAGCCACATATCATCAACAATAATCATATGACCtgttgat > 1:3508025‑M2/1‑84 (MQ=255) accaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatg < 1:2374024‑M2/91‑9 (MQ=255) accaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatg > 1:2291881‑M2/1‑83 (MQ=255) accaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatg > 1:155892‑M2/1‑83 (MQ=255) ccaccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatga < 1:2978142‑M2/91‑10 (MQ=255) ccTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATAc < 1:2247033/91‑1 (MQ=255) ttAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTg < 1:2130974/91‑1 (MQ=255) ttAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTg < 1:2442458/91‑1 (MQ=255) tAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTgg < 1:3258446/91‑1 (MQ=255) aaGTAGTTGCAGACGTACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGc > 1:3540042/1‑91 (MQ=255) aaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGc > 1:2668213/1‑91 (MQ=255) aaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGc > 1:3842194/1‑91 (MQ=255) aaGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGc < 1:420404/91‑1 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa < 1:1929983/91‑1 (MQ=255) agtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCa > 1:2751840/1‑91 (MQ=255) gtagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCaa > 1:3010702/1‑91 (MQ=255) tagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCaaa < 1:3107001/91‑1 (MQ=255) tagtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCaaa > 1:962801/1‑91 (MQ=255) agtTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAAt < 1:340651/91‑1 (MQ=255) ttGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAACTTc > 1:3339596/1‑91 (MQ=255) ttGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTc > 1:2013459/1‑91 (MQ=255) tGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCt > 1:813218/1‑91 (MQ=255) tGCAGACGCACTTCCTAAATCGTCAGCAGTGTTCAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCt < 1:3676162/91‑1 (MQ=255) cAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGt > 1:1014483/1‑91 (MQ=255) cAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGt > 1:3954263/1‑91 (MQ=255) cAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGt > 1:449033/1‑91 (MQ=255) aGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTc < 1:906777/91‑1 (MQ=255) gACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCa < 1:3394206/91‑1 (MQ=255) gACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCa > 1:780382/1‑91 (MQ=255) aCGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCaa < 1:3618252/91‑1 (MQ=255) aCGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCaa < 1:766450/91‑1 (MQ=255) cACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAAccc > 1:1731406/1‑91 (MQ=255) cACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAAccc < 1:1261561/91‑1 (MQ=255) aCTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCt < 1:2336764/91‑1 (MQ=255) cTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCtt < 1:1029442/91‑1 (MQ=255) ttCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTc > 1:2640269/1‑91 (MQ=255) ttCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTc > 1:2189160/1‑91 (MQ=255) ttCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTc < 1:2219275/91‑1 (MQ=255) tCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCa > 1:3799020/1‑91 (MQ=255) tAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACt < 1:3705704/91‑1 (MQ=255) aTCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagt < 1:1044242‑M2/91‑44 (MQ=255) cGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACAcc < 1:564158/91‑1 (MQ=255) cGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACAcc < 1:1087911/91‑1 (MQ=255) cGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACAcc > 1:1199404/1‑91 (MQ=255) cGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACAcc < 1:3052216/91‑1 (MQ=255) gTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCt > 1:1900528/1‑91 (MQ=255) cagcagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaa < 1:703775/91‑1 (MQ=255) cagcagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaa > 1:1175798/1‑91 (MQ=255) agcagTGTTTAACCACATATCATCAACAATAATCATACGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaaa > 1:3506007/1‑91 (MQ=255) gcagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaaaa < 1:612347/91‑1 (MQ=255) gcacTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTaaaa < 1:3215059/91‑1 (MQ=255) cagTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaat < 1:2490556/91‑1 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:86907/91‑1 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:2579063/91‑1 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:388133/91‑1 (MQ=255) tgtTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAaaataaa < 1:1744795/91‑1 (MQ=255) tttAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATg > 1:1785396/1‑91 (MQ=255) tttAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATg < 1:2813762/91‑1 (MQ=255) tttAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATg > 1:1138012/1‑91 (MQ=255) aaCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCtt > 1:2096753/1‑91 (MQ=255) aaCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCtt < 1:2532426/91‑1 (MQ=255) aaCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCtt > 1:1428126/1‑91 (MQ=255) aCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCttt < 1:2713032/91‑1 (MQ=255) aCCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCttt > 1:4133242/1‑91 (MQ=255) cacaTATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTaa > 1:1814547/1‑91 (MQ=255) cacaTATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTaa > 1:4002065/1‑91 (MQ=255) acaTATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAAt > 1:3474932/1‑91 (MQ=255) acaTATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAAt < 1:2917235/91‑1 (MQ=255) caTATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATc < 1:1312072/91‑1 (MQ=255) tcatcaACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGct > 1:74831/1‑91 (MQ=255) tcatcaACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGct > 1:1606076/1‑91 (MQ=255) atcaACAATAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtggta < 1:1699061‑M2/91‑71 (MQ=255) tcaACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTCAATCTGCTCta > 1:3761188/1‑91 (MQ=255) aacaaTAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtggtaata < 1:2604256‑M2/91‑74 (MQ=255) acaaTAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtggtaatac < 1:478639‑M2/91‑75 (MQ=255) acaaTAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCATCTACACCTAAAATAAATGCTTTAATCTGCTCTATaa < 1:624116/91‑1 (MQ=255) caaTAATCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtggtaataca < 1:1968915‑M2/91‑76 (MQ=255) caaTAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATaaa > 1:1862728/1‑91 (MQ=255) aataatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATaaaa < 1:4055513/91‑1 (MQ=255) ataatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAc > 1:585919/1‑91 (MQ=255) aatCATATGACCtgttgatgatatgtggttaaacactgctgacgatttaggaagtgcgtctgcaactacttttaaggtggtaatacagtta < 1:665715‑M2/91‑80 (MQ=255) aatCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAAccc > 1:2390782/1‑91 (MQ=255) atCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCa > 1:288721/1‑91 (MQ=255) cATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt > 1:1454969/1‑91 (MQ=255) cATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtt < 1:2772731/91‑1 (MQ=255) tatGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAtttt > 1:337306/1‑91 (MQ=255) atGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAttttt > 1:835731/1‑91 (MQ=255) atGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCAttttt < 1:4090407/91‑1 (MQ=255) tGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATATAACCCATTTTtc < 1:3187845/91‑1 (MQ=255) gACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTtct < 1:1230297/91‑1 (MQ=255) gACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTtct > 1:1363076/1‑91 (MQ=255) ccTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTctcc < 1:2153056/91‑1 (MQ=255) ccTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTctcc > 1:2921800/1‑91 (MQ=255) | ACTGTATTACCACCTTAAAAGTAGTTGCAGACGCACTTCCTAAATCGTCAGCAGTGTTTAACCACATATCATCAACAATAATCATATGACCTGTTGATGATACTGGAGCAAATTCTGTCAACCCTTCAACTACACCTAAAATAAATGCTTTAATCTGCTCTATAAAACCCATTTTTCTCCT > CP000731/17123‑17303 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |