BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	22935 =	341 (0.970)	20 (0.060)	10/146	NT	6.6%	coding (1392/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter
*	?	CP000731	22963 =	253 (0.790)	20 (0.060)	10/146	NT	6.6%	coding (1420/1467 nt)	USA300HOU_pUSA300HOUMR0028	macrolide transporter

Only 100 of 395 total aligned reads displayed.

ACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCATTTATAT  >  CP000731/22873‑23053

gcATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAg                                                                                            <  1:217835/90‑1 (MQ=255)

aCATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAg                                                                                            <  1:2653873/91‑1 (MQ=255)

aCATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAg                                                                                            >  1:2022077/1‑91 (MQ=255)

aCATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAg                                                                                            <  1:830407/91‑1 (MQ=255)

 cATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGGTACAAGGTTTGTTAAACATGTATCAGa                                                                                           >  1:1175363/1‑91 (MQ=255)

 cATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGa                                                                                           <  1:1116418/91‑1 (MQ=255)

 cATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGa                                                                                           <  1:2892522/91‑1 (MQ=255)

  agtgtatagtttttaagttatatcatgaagagattgtcctgttaattcccattttttatcTGATACAAGGTTTGTTAAACATGTATCAGAt                                                                                          >  1:3086987‑M1/61‑91 (MQ=255)

  aTTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGAt                                                                                          <  1:3893916/91‑1 (MQ=255)

  aTTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGAt                                                                                          <  1:484974/91‑1 (MQ=255)

   ttAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATa                                                                                         <  1:1759688/91‑1 (MQ=255)

   ttAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATa                                                                                         >  1:159493/1‑91 (MQ=255)

     aGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaa                                                                                       >  1:131492/1‑91 (MQ=255)

       aaGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaaaa                                                                                     >  1:2464176/1‑91 (MQ=255)

       aaGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGATTGTTAAACATGTATCAGATaaaaa                                                                                     >  1:3880378/1‑91 (MQ=255)

        aGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATaaaaaa                                                                                    >  1:2102135/1‑91 (MQ=255)

         gCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAAt                                                                                   >  1:1790300/1‑91 (MQ=255)

         gCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAAt                                                                                   <  1:3028766/91‑1 (MQ=255)

           aTTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATgg                                                                                 <  1:1288017/91‑1 (MQ=255)

               gAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAAt                                                                             >  1:2044266/1‑91 (MQ=255)

                  aTGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTaa                                                                          <  1:37895/91‑1 (MQ=255)

                   tGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAAc                                                                         >  1:2935561/1‑91 (MQ=255)

                        aTGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAACATGGGAATTAACAGGAc                                                                    >  1:3548450/1‑91 (MQ=255)

                        aTGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGAc                                                                    >  1:651305/1‑91 (MQ=255)

                         tGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACa                                                                   >  1:325239/1‑91 (MQ=255)

                         tGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACa                                                                   <  1:40375/91‑1 (MQ=255)

                         tGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACa                                                                   <  1:46192/91‑1 (MQ=255)

                         tGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACa                                                                   <  1:2674266/91‑1 (MQ=255)

                          gAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACaa                                                                  <  1:3507112/91‑1 (MQ=255)

                          gAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACaa                                                                  <  1:419518/91‑1 (MQ=255)

                             taaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtct                                                               <  1:710079/91‑1 (MQ=255)

                             taaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtct                                                               >  1:3655347/1‑91 (MQ=255)

                             taaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtct                                                               <  1:2289738/91‑1 (MQ=255)

                              aaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtctc                                                              <  1:2366220/91‑1 (MQ=255)

                              aaataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAAtctc                                                              <  1:3622898/91‑1 (MQ=255)

                               aataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATctct                                                             <  1:1061685/91‑1 (MQ=255)

                               aataTCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATctct                                                             >  1:2831454/1‑91 (MQ=255)

                                atatCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCtt                                                            <  1:890825/91‑1 (MQ=255)

                                atatCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCtt                                                            <  1:848496/91‑1 (MQ=255)

                                 tatCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTc                                                           <  1:73713/91‑1 (MQ=255)

                                   tCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCAt                                                         <  1:2597894/91‑1 (MQ=255)

                                    ccTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATg                                                        <  1:3983645/91‑1 (MQ=255)

                                       ggAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGAATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGata                                                     >  1:3296542/1‑91 (MQ=255)

                                        gAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGatat                                                    <  1:1917720/91‑1 (MQ=255)

                                         aaTCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGAtata                                                   <  1:1897689/91‑1 (MQ=255)

                                         aaTCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGAtata                                                   >  1:1204242/1‑91 (MQ=255)

                                         aaTCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGAtata                                                   <  1:3714262/91‑1 (MQ=255)

                                            cATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACt                                                <  1:611141/91‑1 (MQ=255)

                                            cATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACt                                                <  1:272648/91‑1 (MQ=255)

                                            cATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACt                                                <  1:2810252/91‑1 (MQ=255)

                                             aTTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACtt                                               >  1:1858410/1‑91 (MQ=255)

                                              ttttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTa                                              >  1:1008618/1‑91 (MQ=255)

                                              ttttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTa                                              >  1:2420151/1‑91 (MQ=255)

                                               tttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTaa                                             >  1:547834/1‑91 (MQ=255)

                                                ttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTaaa                                            >  1:4075327/1‑91 (MQ=255)

                                                ttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTaaa                                            >  1:3122466/1‑91 (MQ=255)

                                                ttGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTaaa                                            <  1:3377574/91‑1 (MQ=255)

                                                     tACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACta                                       <  1:4099751/91‑1 (MQ=255)

                                                       cATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACtata                                     >  1:2859271/1‑91 (MQ=255)

                                                        aTCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATac                                    >  1:3455829/1‑91 (MQ=255)

                                                          tatctgatacatgtttaacaaaccttgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATacac                                  >  1:2909007‑M2/33‑91 (MQ=255)

                                                           acaTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACt                                 <  1:1466598/91‑1 (MQ=255)

                                                            caTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAATAACTATACACTa                                <  1:3204915/91‑1 (MQ=255)

                                                             ctgatacatgtttaacaaaccttgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTaa                               >  1:1142491‑M2/30‑91 (MQ=255)

                                                             ctgatacatgtttaacaaaccttgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTaa                               >  1:2996177‑M2/30‑91 (MQ=255)

                                                             aTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTaa                               <  1:3484700/91‑1 (MQ=255)

                                                             aTGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTaa                               >  1:1423808/1‑91 (MQ=255)

                                                              tgatacatgtttaacaaaccttgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAAt                              >  1:3942349‑M2/29‑91 (MQ=255)

                                                                ATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAAttt                            <  1:75396‑M1/91‑1 (MQ=255)

                                                                  ACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTtat                          >  1:3058742‑M1/1‑91 (MQ=255)

                                                                   CAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTtata                         <  1:514957‑M1/91‑1 (MQ=255)

                                                                   CAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTtata                         <  1:3803174‑M1/91‑1 (MQ=255)

                                                                   CAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGAAATAACTTAAAAACTATACACTAATTtata                         <  1:1035549‑M1/91‑1 (MQ=255)

                                                                     tgtttaacaaaccttgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATAtt                       >  1:1107745‑M2/22‑91 (MQ=255)

                                                                     aGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATAtt                       >  1:912604/1‑91 (MQ=255)

                                                                      ggTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTg                      >  1:2617766/1‑91 (MQ=255)

                                                                       gTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGa                     >  1:3424637/1‑91 (MQ=255)

                                                                        tttGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGaa                    >  1:357737/1‑91 (MQ=255)

                                                                           gTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAGTCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAatat                 >  1:3597629/1‑91 (MQ=255)

                                                                           gTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAatat                 <  1:287156/91‑1 (MQ=255)

                                                                            ttAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATAtt                <  1:2351268/91‑1 (MQ=255)

                                                                             tAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTa               <  1:3826630/91‑1 (MQ=255)

                                                                             tAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTa               <  1:169252/91‑1 (MQ=255)

                                                                             tAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTa               <  1:2226748/91‑1 (MQ=255)

                                                                             tAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTa               <  1:3403106/91‑1 (MQ=255)

                                                                             aaaccttgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTa               >  1:276419‑M2/14‑91 (MQ=255)

                                                                               aaCATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAgg             <  1:1962359/91‑1 (MQ=255)

                                                                               aaCATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAgg             >  1:1395178/1‑91 (MQ=255)

                                                                               aaCATGTATCAGAGAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAgg             <  1:4153209/91‑1 (MQ=255)

                                                                                aCATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGt            <  1:778331/91‑1 (MQ=255)

                                                                                 cATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGtt           <  1:3092524/91‑1 (MQ=255)

                                                                                 cATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGtt           >  1:2328770/1‑91 (MQ=255)

                                                                                   tgtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCa         <  1:164278‑M2/84‑1 (MQ=255)

                                                                                    gtatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCAt        >  1:3244535‑M2/7‑91 (MQ=255)

                                                                                     tatcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCAtt       >  1:2136984‑M2/6‑91 (MQ=255)

                                                                                      atcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCAttt      >  1:973239‑M2/5‑91 (MQ=255)

                                                                                       tcaGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCATTta     <  1:2743073‑M2/88‑1 (MQ=255)

                                                                                        caGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTCGGTTCATTtat    >  1:3758957‑M2/3‑91 (MQ=255)

                                                                                        caGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCATTtat    >  1:1570522‑M2/3‑91 (MQ=255)

                                                                                         aGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCATTtata   <  1:3915348‑M2/90‑1 (MQ=255)

ACATTAGAAGCATTAGAAATGTTTATGAATAAATATCCTGGAATCATTTTGTTTACATCACATGATACAAGGTTTGTTAAACATGTATCAGATAAAAAATGGGAATTAACAGGACAATCTCTTCATGATATAACTTAAAAACTATACACTAATTTATATTGAATATTAGGTTCATTTATAT  >  CP000731/22873‑23053

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.