BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	173490 =	94 (0.960)	6 (0.070)	5/146	NT	7.1%	coding (2390/2610 nt)	adhE	Aldehyde‑alcohol dehydrogenase
*	?	USA300TCH1516_ALE	173521 =	72 (0.800)	6 (0.070)	5/146	NT	7.1%	coding (2421/2610 nt)	adhE	Aldehyde‑alcohol dehydrogenase

Only 100 of 103 total aligned reads displayed.

ACAGATTATGCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGCA  >  USA300TCH1516_ALE/173432‑173608

aCAGATTATGCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAAt                                                                                        <  1:1045755/91‑1 (MQ=255)

  cttcagacacaccttgtgatttcaaattcatttcaattccgactgattggcctaatTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTa                                                                                      >  1:3171576‑M1/57‑91 (MQ=255)

  aGATTATGCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTa                                                                                      <  1:1913091/91‑1 (MQ=255)

   cttcagacacaccttgtgatttcaaattcatttcaattccgactgattgacctaattcgtagaatcattagctaaagctgtctacgaATTa                                                                                      <  1:3171533‑M2/4‑1 (MQ=255)

     tcagacacaccttgtgatttcaaattcatttcaattccgactgattgacctaattcgtagaatcattagctaaagctgtctacgaATTAgg                                                                                    <  1:3095295‑M2/6‑1 (MQ=255)

       aTGCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCa                                                                                 >  1:1356453/1‑91 (MQ=255)

       aTGCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCa                                                                                 <  1:1464571/91‑1 (MQ=255)

         gCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAAt                                                                               >  1:2710815/1‑91 (MQ=255)

         gCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAAt                                                                               >  1:2710701/1‑91 (MQ=255)

         gCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAAt                                                                               >  1:3518900/1‑91 (MQ=255)

             atatTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGt                                                                           >  1:1522949/1‑91 (MQ=255)

              tatTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTc                                                                          <  1:535136/91‑1 (MQ=255)

              tatTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTc                                                                          <  1:3127777/91‑1 (MQ=255)

               atTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCg                                                                         <  1:254500/91‑1 (MQ=255)

               atTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCg                                                                         <  1:254677/91‑1 (MQ=255)

               atTGCCAAATTCTTAGGATTAAAAGGGAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCg                                                                         <  1:254877/91‑1 (MQ=255)

                ttGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCgg                                                                        <  1:1821565/91‑1 (MQ=255)

                 tGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGa                                                                       <  1:511844/91‑1 (MQ=255)

                  gCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGaa                                                                      >  1:1961904/1‑91 (MQ=255)

                   ccAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAAt                                                                     >  1:3003597/1‑91 (MQ=255)

                   ccAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAAt                                                                     >  1:2034503/1‑91 (MQ=255)

                   ccAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAAt                                                                     >  1:345123/1‑91 (MQ=255)

                   ccAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAAt                                                                     >  1:2742614/1‑91 (MQ=255)

                     aaaTTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTg                                                                   <  1:1131271/91‑1 (MQ=255)

                      aaTTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGa                                                                  >  1:1197268/1‑91 (MQ=255)

                      aaTTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGa                                                                  <  1:3905302/91‑1 (MQ=255)

                       aTTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGaa                                                                 <  1:319393/91‑1 (MQ=255)

                         tCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAAt                                                               <  1:2577609/91‑1 (MQ=255)

                         tCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAAt                                                               <  1:702155/91‑1 (MQ=255)

                         tCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAAt                                                               >  1:3011837/1‑91 (MQ=255)

                         tCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAAt                                                               <  1:2578038/91‑1 (MQ=255)

                         tCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAAt                                                               >  1:3516676/1‑91 (MQ=255)

                          cTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATg                                                              <  1:167335/91‑1 (MQ=255)

                          cTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATg                                                              <  1:3881888/91‑1 (MQ=255)

                           ttAGGATTAAATGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGa                                                             <  1:852734/91‑1 (MQ=255)

                             aGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAAt                                                           >  1:779196/1‑91 (MQ=255)

                             aGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAAt                                                           >  1:133481/1‑91 (MQ=255)

                               gATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAAttt                                                         <  1:1068918/91‑1 (MQ=255)

                                 ttAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGa                                                       <  1:1788649/91‑1 (MQ=255)

                                 ttAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGa                                                       >  1:1363538/1‑91 (MQ=255)

                                  tAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGaa                                                      <  1:420793/91‑1 (MQ=255)

                                   aaaaGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGaaa                                                     >  1:2963386/1‑91 (MQ=255)

                                   aaaaGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGaaa                                                     >  1:2964856/1‑91 (MQ=255)

                                    aaaGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAAt                                                    >  1:3811037/1‑91 (MQ=255)

                                    aaaGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAAt                                                    <  1:1694255/91‑1 (MQ=255)

                                      aGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATca                                                  >  1:2212959/1‑91 (MQ=255)

                                       ggTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATcac                                                 <  1:2284931/91‑1 (MQ=255)

                                       ggTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATcac                                                 <  1:116214/91‑1 (MQ=255)

                                         tAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACaa                                               <  1:2653298/91‑1 (MQ=255)

                                         tAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACaa                                               <  1:3586014/91‑1 (MQ=255)

                                             aCGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAACCACAAGgtg                                           >  1:3977320/1‑91 (MQ=255)

                                              cGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGgtgt                                          >  1:3129834/1‑91 (MQ=255)

                                               gACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGgtgtg                                         <  1:245615/91‑1 (MQ=255)

                                               gACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGgtgtg                                         <  1:1480546/91‑1 (MQ=255)

                                                aCAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGgtgtgt                                        <  1:4108944/91‑1 (MQ=255)

                                                   gAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTg                                     <  1:2915402/91‑1 (MQ=255)

                                                    cctaatTCGTAGACAGCTTTAGCTAATGAT‑TCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTga                                    <  1:3095295‑M1/85‑1 (MQ=255)

                                                      taatTCGTAGACAGCTTTAGCTAATGAT‑TCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaag                                  <  1:3171533‑M1/87‑1 (MQ=255)

                                                      gCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaag                                  >  1:1475619/1‑91 (MQ=255)

                                                       taattcgtagacagctttagctaatgattctacgaATTAGGCCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaag                                  >  1:3171576‑M2/36‑91 (MQ=255)

                                                       cACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaaga                                 >  1:353986/1‑91 (MQ=255)

                                                       cACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaaga                                 >  1:354024/1‑91 (MQ=255)

                                                       cACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaaga                                 <  1:2571123/91‑1 (MQ=255)

                                                       cACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaaga                                 <  1:2571114/91‑1 (MQ=255)

                                                        aCTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaagaa                                <  1:3130824/91‑1 (MQ=255)

                                                        aCTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaagaa                                >  1:2961660/1‑91 (MQ=255)

                                                        aCTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaagaa                                >  1:155288/1‑91 (MQ=255)

                                                           CGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaagaagaa                             <  1:20695‑M1/91‑1 (MQ=255)

                                                            cgtagacagctttagctaatgattctacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTgaagaagaa                             >  1:1085142‑M2/31‑91 (MQ=255)

                                                            GTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAAt                            >  1:3704806‑M1/1‑91 (MQ=255)

                                                            GTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAAt                            >  1:2014982‑M1/1‑91 (MQ=255)

                                                             TAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAAtt                           <  1:694250‑M1/91‑1 (MQ=255)

                                                              tagacagctttagctaatgattctacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAAtt                           >  1:3779829‑M2/29‑91 (MQ=255)

                                                               GA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTaa                         <  1:4140966‑M1/91‑1 (MQ=255)

                                                               GA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTaa                         <  1:4141181‑M1/91‑1 (MQ=255)

                                                               GA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTaa                         <  1:1026454‑M1/91‑1 (MQ=255)

                                                                gacagctttagctaatgattctacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTaa                         >  1:3879346‑M2/27‑91 (MQ=255)

                                                                gacagctttagctaatgattctacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTaa                         >  1:2102160‑M2/27‑91 (MQ=255)

                                                                A‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTaaa                        <  1:1995187‑M1/91‑1 (MQ=255)

                                                                   tCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATg                      >  1:3387061/1‑91 (MQ=255)

                                                                    cATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGa                     >  1:3560663/1‑91 (MQ=255)

                                                                     aTTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAg                    >  1:3987574/1‑91 (MQ=255)

                                                                       tAGCTAAAGCTGTCTACGAATTAGGTCAATCAGGCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTc                  <  1:3401478/91‑1 (MQ=255)

                                                                        aGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCa                 >  1:169110/1‑91 (MQ=255)

                                                                         gCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCaa                >  1:181635/1‑91 (MQ=255)

                                                                           tAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAAtt              >  1:3345967/1‑91 (MQ=255)

                                                                           tAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAAtt              >  1:2740057/1‑91 (MQ=255)

                                                                            aaaGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTg             >  1:3062916/1‑91 (MQ=255)

                                                                             aaGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAAGTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGa            <  1:4139076/91‑1 (MQ=255)

                                                                              aGCAGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGAt           <  1:3343805/91‑1 (MQ=255)

                                                                               gCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATa          >  1:1904273/1‑91 (MQ=255)

                                                                                   tctacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAAt      >  1:1016519‑M2/8‑91 (MQ=255)

                                                                                    ctacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATg     <  1:948324‑M2/85‑1 (MQ=255)

                                                                                     tacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATgg    <  1:1725887‑M2/86‑1 (MQ=255)

                                                                                     tacgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATgg    <  1:871802‑M2/86‑1 (MQ=255)

                                                                                      acgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGc   <  1:2651357‑M2/87‑1 (MQ=255)

                                                                                      acgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGc   >  1:3479694‑M2/5‑91 (MQ=255)

                                                                                       cgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGCa  <  1:2376865‑M2/88‑1 (MQ=255)

                                                                                       cgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGCa  >  1:2985068‑M2/4‑91 (MQ=255)

                                                                                       cgaATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGCa  >  1:3100435‑M2/4‑91 (MQ=255)

ACAGATTATGCAGATATTGCCAAATTCTTAGGATTAAAAGGTAATACGACAGAAGCACTCGTAGA‑ATCATTAGCTAAAGCTGTCTACGAATTAGGTCAATCAGTCGGAATTGAAATGAATTTGAAATCACAAGGTGTGTCTGAAGAAGAATTAAATGAGTCAATTGATAGAATGGCA  >  USA300TCH1516_ALE/173432‑173608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.