BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	260284 =	65 (0.660)	8 (0.090)	7/138	NT	12.8%	intergenic (‑398/‑190)	potD_1/pflB	Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase
*	?	USA300TCH1516_ALE	260324 =	53 (0.620)	8 (0.090)	7/138	NT	12.8%	intergenic (‑438/‑150)	potD_1/pflB	Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase

Only 100 of 105 total aligned reads displayed.

TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACT  >  USA300TCH1516_ALE/260234‑260414

taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACaaa                                                                                            >  1:2040634/1‑91 (MQ=255)

taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACaaa                                                                                            <  1:909859/91‑1 (MQ=255)

taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACaaa                                                                                            <  1:909728/91‑1 (MQ=255)

taCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACaaa                                                                                            >  1:664065/1‑91 (MQ=255)

 aCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAAt                                                                                           >  1:822686/1‑91 (MQ=255)

 aCTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAAt                                                                                           >  1:817380/1‑91 (MQ=255)

   tCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTa                                                                                         <  1:1028511/91‑1 (MQ=255)

   tCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTa                                                                                         <  1:1832756/91‑1 (MQ=255)

   tCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTa                                                                                         <  1:1028185/91‑1 (MQ=255)

    ccTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAg                                                                                        <  1:2487475/91‑1 (MQ=255)

       aaaTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTAc                                                                                     <  1:3354022/91‑1 (MQ=255)

       aaaTTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTAc                                                                                     <  1:1720005/91‑1 (MQ=255)

          ttAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGt                                                                                  >  1:2558045/1‑91 (MQ=255)

           tAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGtt                                                                                 <  1:494554/91‑1 (MQ=255)

            aaCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGttt                                                                                <  1:3906955/91‑1 (MQ=255)

             aCTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTc                                                                               >  1:526121/1‑91 (MQ=255)

              cTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              >  1:1163951/1‑91 (MQ=255)

              cTTGTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCt                                                                              <  1:3737563/91‑1 (MQ=255)

                tttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTAt                                                                            <  1:664552/91‑1 (MQ=255)

                 ttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATg                                                                           <  1:662572/91‑1 (MQ=255)

                 ttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATg                                                                           >  1:3671836/1‑91 (MQ=255)

                 ttAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATg                                                                           >  1:2140516/1‑91 (MQ=255)

                  tAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGt                                                                          <  1:2300864/91‑1 (MQ=255)

                      gCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTg                                                                      >  1:1504623/1‑91 (MQ=255)

                      gCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTg                                                                      <  1:186128/91‑1 (MQ=255)

                        aaTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGac                                                                    <  1:2206399/91‑1 (MQ=255)

                         aTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                   >  1:1112052/1‑91 (MQ=255)

                         aTGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGaca                                                                   <  1:879293/91‑1 (MQ=255)

                         aTGAAAATAGTGAACATTATAACGGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGCTTCTATGTTTTGaca                                                                   >  1:1112051/1‑91 (MQ=255)

                              aaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacatacat                                                              >  1:348402/1‑91 (MQ=255)

                              aaTAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGacatacat                                                              <  1:725112/91‑1 (MQ=255)

                                 aGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtg                                                           >  1:208946/1‑91 (MQ=255)

                                 aGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtg                                                           <  1:2483861/91‑1 (MQ=255)

                                   tGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgat                                                         <  1:2152933/91‑1 (MQ=255)

                                   tGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgat                                                         <  1:842485/91‑1 (MQ=255)

                                   tGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgat                                                         <  1:4123082/91‑1 (MQ=255)

                                    gAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTtgatg                                                        >  1:547454/1‑91 (MQ=255)

                                           ataACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTg                                                 >  1:1413089/1‑91 (MQ=255)

                                            taACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                <  1:3172681/91‑1 (MQ=255)

                                            taACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                <  1:4109195/91‑1 (MQ=255)

                                            taACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                <  1:4109104/91‑1 (MQ=255)

                                            taACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGt                                                <  1:3991162/91‑1 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              >  1:754046/1‑91 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              <  1:3618651/91‑1 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              >  1:4122325/1‑91 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              <  1:223306/91‑1 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              <  1:223582/91‑1 (MQ=255)

                                              aCTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTAc                                              <  1:1819555/91‑1 (MQ=255)

                                                tgttgtGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACAt                                            <  1:3693440/91‑1 (MQ=255)

                                                  ttgtgtaacagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATaa                                          >  1:3716617‑M2/41‑91 (MQ=255)

                                                  TTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATaa                                          <  1:3125629‑M1/91‑1 (MQ=255)

                                                   tgtgtaacagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAAt                                         >  1:2754195‑M2/40‑91 (MQ=255)

                                                      GTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTa                                      <  1:2812319‑M1/91‑1 (MQ=255)

                                                       taacagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAt                                     >  1:3600706‑M2/36‑91 (MQ=255)

                                                       TAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAt                                     >  1:3115577‑M1/1‑91 (MQ=255)

                                                       TAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAt                                     >  1:3666678‑M1/1‑91 (MQ=255)

                                                         acagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:33174‑M2/34‑91 (MQ=255)

                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:659568‑M1/1‑91 (MQ=255)

                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   <  1:3018596‑M1/91‑1 (MQ=255)

                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:663316‑M1/1‑91 (MQ=255)

                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   >  1:659409‑M1/1‑91 (MQ=255)

                                                         ACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgt                                   <  1:2883363‑M1/91‑1 (MQ=255)

                                                          cagtaatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTAtgtg                                  >  1:2104123‑M2/33‑91 (MQ=255)

                                                             aaTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                               >  1:722311/1‑91 (MQ=255)

                                                             aaTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaa                               >  1:722429/1‑91 (MQ=255)

                                                              aatatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              >  1:812528‑M2/29‑91 (MQ=255)

                                                              aTGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaa                              >  1:1985000/1‑91 (MQ=255)

                                                               atatgctaattgcattctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaa                             >  1:1588154‑M2/28‑91 (MQ=255)

                                                                 cAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGaaaaaaa                           >  1:3420356/1‑91 (MQ=255)

                                                                     tAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcac                       <  1:2788313/91‑1 (MQ=255)

                                                                      aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcaca                      <  1:3030650/91‑1 (MQ=255)

                                                                      aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcaca                      <  1:926893/91‑1 (MQ=255)

                                                                      aGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATcaca                      >  1:3407201/1‑91 (MQ=255)

                                                                        cATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaac                    >  1:2609352/1‑91 (MQ=255)

                                                                         atatTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCacaaca                   <  1:2679601/91‑1 (MQ=255)

                                                                           atTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaa                 >  1:1271761/1‑91 (MQ=255)

                                                                            ttACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaac                >  1:1727779/1‑91 (MQ=255)

                                                                            ttACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACaacaaac                >  1:1728011/1‑91 (MQ=255)

                                                                              aCTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACAt              >  1:1489419/1‑91 (MQ=255)

                                                                              aCTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACAt              <  1:2237945/91‑1 (MQ=255)

                                                                              aCTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACAt              >  1:2023051/1‑91 (MQ=255)

                                                                              aCTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACAt              >  1:2017106/1‑91 (MQ=255)

                                                                               ctgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATg             <  1:2416981‑M2/80‑1 (MQ=255)

                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            >  1:2899886‑M2/11‑91 (MQ=255)

                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            >  1:360619‑M2/11‑91 (MQ=255)

                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            <  1:2781376‑M2/81‑1 (MQ=255)

                                                                                tgttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGc            >  1:2898616‑M2/11‑91 (MQ=255)

                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           >  1:946978‑M2/10‑91 (MQ=255)

                                                                                 gttacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCt           >  1:2854886‑M2/10‑91 (MQ=255)

                                                                                   tacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTAc         <  1:1589179‑M2/84‑1 (MQ=255)

                                                                                   tacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTAc         <  1:206062‑M2/84‑1 (MQ=255)

                                                                                   tacacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTAc         >  1:3693234‑M2/8‑91 (MQ=255)

                                                                                     cacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACaa       >  1:1226470‑M2/6‑91 (MQ=255)

                                                                                     cacaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACaa       >  1:1223402‑M2/6‑91 (MQ=255)

                                                                                      acaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAAt      >  1:14095‑M2/5‑91 (MQ=255)

                                                                                      acaaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAAt      >  1:13838‑M2/5‑91 (MQ=255)

                                                                                        aaATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGa    >  1:3373965‑M2/3‑91 (MQ=255)

                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   >  1:720182‑M2/2‑91 (MQ=255)

                                                                                         aATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGAc   >  1:2881493‑M2/2‑91 (MQ=255)

                                                                                          aTTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACt  <  1:3553236/91‑1 (MQ=255)

TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGAATGCAATTAGCATATTACTGTTACACAAATTAGTACAGTTTCTATGTTTTGACATACATTTGATGAAAATTGTACATAATTTATGTGAAAAAAATCACAACAAACATGCTACAATGACT  >  USA300TCH1516_ALE/260234‑260414

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.