BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	329202 =	116 (1.180)	11 (0.130)	8/140	NT	11.3%	intergenic (+70/+73)	USA300HOU_RS01475/ssaA2_1	hypothetical protein/Staphylococcal secretory antigen ssaA2
*	?	USA300TCH1516_ALE	329255 =	71 (0.830)	11 (0.130)	8/140	NT	11.3%	intergenic (+123/+20)	USA300HOU_RS01475/ssaA2_1	hypothetical protein/Staphylococcal secretory antigen ssaA2

Only 100 of 122 total aligned reads displayed.

TTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACC  >  USA300TCH1516_ALE/329165‑329343

tttCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCtttt                                                                                           <  1:4061075/91‑1 (MQ=255)

  tCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTa                                                                                         >  1:3938783/1‑91 (MQ=255)

   cTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTAt                                                                                        <  1:918761/91‑1 (MQ=255)

   cTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTAt                                                                                        >  1:3444869/1‑91 (MQ=255)

         aaTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGt                                                                                 <  1:422480/91‑1 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                >  1:1836618/1‑91 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                >  1:1836804/1‑91 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                >  1:1694498/1‑91 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                >  1:4059990/1‑91 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                <  1:904339/91‑1 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                <  1:3661585/91‑1 (MQ=255)

          aTTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTc                                                                                <  1:3661285/91‑1 (MQ=255)

           ttttATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCa                                                                               >  1:4131031/1‑91 (MQ=255)

           ttttATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCa                                                                               <  1:3570446/91‑1 (MQ=255)

               ataATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAt                                                                           <  1:1579963/91‑1 (MQ=255)

                taATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAtt                                                                          >  1:3697897/1‑91 (MQ=255)

                taATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAtt                                                                          <  1:3802423/91‑1 (MQ=255)

                 aaTCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAtta                                                                         >  1:3320093/1‑91 (MQ=255)

                  aTCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAttaa                                                                        >  1:2609689/1‑91 (MQ=255)

                    cGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAttaatt                                                                      >  1:3303955/1‑91 (MQ=255)

                     gAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAttaattt                                                                     <  1:633505/91‑1 (MQ=255)

                      aaTAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAttaattta                                                                    <  1:3477237/91‑1 (MQ=255)

                       aTAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAttaatttaa                                                                   >  1:894332/1‑91 (MQ=255)

                        tAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGAttaatttaat                                                                  <  1:3777316/91‑1 (MQ=255)

                          aCATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATgg                                                                >  1:1177203/1‑91 (MQ=255)

                           cATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGa                                                               <  1:878263/91‑1 (MQ=255)

                           cATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGa                                                               <  1:876044/91‑1 (MQ=255)

                            aTACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGAt                                                              >  1:3356831/1‑91 (MQ=255)

                            aTACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGAt                                                              >  1:3031931/1‑91 (MQ=255)

                             tACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATg                                                             <  1:2621991/91‑1 (MQ=255)

                               caataaaaagcgaccagttcgcagtttacaattcgtaacactgcaaaattggtcgctttATTTTGTATGTCATGATTAATTTAATGGATGt                                                            >  1:3216745‑M2/60‑91 (MQ=255)

                                 ataaaaagcgaccagttcgcagtttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAAt                                                         >  1:1557295‑M2/58‑91 (MQ=255)

                                 aaaTAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAAt                                                         <  1:3484349/91‑1 (MQ=255)

                                    tAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATtat                                                      >  1:1696769/1‑91 (MQ=255)

                                     AAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATtata                                                     >  1:2710756‑M1/1‑91 (MQ=255)

                                      AAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTatat                                                    <  1:2167667‑M1/91‑1 (MQ=255)

                                      AAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTatat                                                    <  1:557665‑M1/91‑1 (MQ=255)

                                        GCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATatga                                                  >  1:3578621‑M1/1‑91 (MQ=255)

                                        GCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATatga                                                  <  1:2764887‑M1/91‑1 (MQ=255)

                                        GCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATatga                                                  >  1:722806‑M1/1‑91 (MQ=255)

                                         cgaccagttcgcagtttacaattcgtaacactgcaaatttggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATatgat                                                 >  1:3691777‑M2/50‑91 (MQ=255)

                                         cgaccagttcgcagtttacaattcgtaacactgcaaatttggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATatgat                                                 >  1:3692390‑M2/50‑91 (MQ=255)

                                         CGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATatgat                                                 <  1:3028457‑M1/91‑1 (MQ=255)

                                           accagttcgcagtttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATAtgatga                                               >  1:55168‑M2/48‑91 (MQ=255)

                                           accagttcgcagtttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATAtgatga                                               >  1:1034349‑M2/48‑91 (MQ=255)

                                           ACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATAtgatga                                               <  1:2631805‑M1/91‑1 (MQ=255)

                                             cagttcgcagtttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGaaa                                             >  1:3429672‑M2/46‑91 (MQ=255)

                                             CAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGaaa                                             <  1:1731002‑M1/91‑1 (MQ=255)

                                               aTTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACt                                           >  1:1525924/1‑91 (MQ=255)

                                               aTTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACt                                           >  1:1526038/1‑91 (MQ=255)

                                                ttcgcagtttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACtt                                          <  1:3360403‑M2/49‑1 (MQ=255)

                                                 tttGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTc                                         <  1:3814348/91‑1 (MQ=255)

                                                 tttGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTc                                         >  1:3422903/1‑91 (MQ=255)

                                                 tcgcagtttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTc                                         >  1:1559737‑M2/42‑91 (MQ=255)

                                                   tGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTg                                       <  1:1457924/91‑1 (MQ=255)

                                                    gCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGa                                      >  1:532039/1‑91 (MQ=255)

                                                    gCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGa                                      <  1:3551929/91‑1 (MQ=255)

                                                    gCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGa                                      >  1:2657423/1‑91 (MQ=255)

                                                      aGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAg                                    <  1:3046122/91‑1 (MQ=255)

                                                      aGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAg                                    >  1:2678760/1‑91 (MQ=255)

                                                       gtgtTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGc                                   >  1:3760333/1‑91 (MQ=255)

                                                        ttacaattcgtaacactgcaaaattggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCa                                  >  1:2028114‑M2/35‑91 (MQ=255)

                                                        tgtTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCa                                  <  1:3459783/91‑1 (MQ=255)

                                                        tgtTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCa                                  >  1:4152886/1‑91 (MQ=255)

                                                        tgtTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCa                                  <  1:579994/91‑1 (MQ=255)

                                                         gtTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCAGAAGCag                                 >  1:2078871/1‑91 (MQ=255)

                                                          ttACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCaga                                >  1:2750060/1‑91 (MQ=255)

                                                          tacaattcgtaacactgcgaactggtcgctttTTATTC‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCaga                                >  1:3516559‑M2/33‑91 (MQ=255)

                                                           tACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCagag                               <  1:3800150/91‑1 (MQ=255)

                                                            aCGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAgaga                              <  1:2834774/91‑1 (MQ=255)

                                                            aCGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATATAATTATATGATGAAACTTCTGAAGCAgaga                              <  1:3690659/91‑1 (MQ=255)

                                                             cGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGAt                             <  1:2713277/91‑1 (MQ=255)

                                                                   gTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCt                       >  1:1702844/1‑91 (MQ=255)

                                                                   gTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCt                       >  1:1563870/1‑91 (MQ=255)

                                                                   gTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCt                       >  1:761807/1‑91 (MQ=255)

                                                                     aaaCTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtg                     <  1:3087887/91‑1 (MQ=255)

                                                                     aaaCTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtg                     <  1:1952208/91‑1 (MQ=255)

                                                                      aaCTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtga                    <  1:3997227/91‑1 (MQ=255)

                                                                      aaCTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtga                    >  1:1179417/1‑91 (MQ=255)

                                                                        cTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTtgatg                  >  1:2031865/1‑91 (MQ=255)

                                                                             aaCTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACg             >  1:132854/1‑91 (MQ=255)

                                                                              aCTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTATTTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGa            <  1:3283580/91‑1 (MQ=255)

                                                                              aCTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGa            <  1:2012752/91‑1 (MQ=255)

                                                                              aCTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGa            <  1:2867080/91‑1 (MQ=255)

                                                                              aCTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGa            <  1:3159557/91‑1 (MQ=255)

                                                                               cTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGat           >  1:445666/1‑91 (MQ=255)

                                                                                 ggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatat         >  1:2363902‑M2/10‑91 (MQ=255)

                                                                                 ggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatat         >  1:2363967‑M2/10‑91 (MQ=255)

                                                                                 ggtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatat         >  1:2364921‑M2/10‑91 (MQ=255)

                                                                                  gtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatata        >  1:351171‑M2/9‑91 (MQ=255)

                                                                                  gtcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatata        <  1:3088751‑M2/83‑1 (MQ=255)

                                                                                   tcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatatat       >  1:1084276‑M2/8‑91 (MQ=255)

                                                                                   tcgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGatatat       >  1:1085166‑M2/8‑91 (MQ=255)

                                                                                    cgctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATAtt      >  1:2270504‑M2/7‑91 (MQ=255)

                                                                                     gctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTc     <  1:3167051‑M2/86‑1 (MQ=255)

                                                                                     gctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTc     <  1:1728786‑M2/86‑1 (MQ=255)

                                                                                      ctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCa    <  1:1368995‑M2/87‑1 (MQ=255)

                                                                                      ctttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCa    >  1:968715‑M2/5‑91 (MQ=255)

                                                                                       tttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCAc   <  1:982180‑M2/88‑1 (MQ=255)

                                                                                        ttTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCAcc  <  1:1790956‑M2/89‑1 (MQ=255)

TTTCTTTGTAATTTTATAATCGAATAACATACAAAATAAAGCGACCAATTTTGCAGTGTTACGAATTGTAAACTGCGAACTGGTCGCTTTTTATTG‑ATGTCATGATTAATTTAATGGATGTAATTATATGATGAAACTTCTGAAGCAGAGATGGTTCTTGATGAAACGATATATTCACC  >  USA300TCH1516_ALE/329165‑329343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.