BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	433374 =	104 (1.060)	6 (0.070)	4/132	NT	7.6%	intergenic (‑783/+194)	tcyP/USA300HOU_RS02040	L‑cystine uptake protein TcyP/hypothetical protein
*	?	USA300TCH1516_ALE	433453 =	61 (0.750)	6 (0.070)	4/132	NT	7.6%	intergenic (‑862/+115)	tcyP/USA300HOU_RS02040	L‑cystine uptake protein TcyP/hypothetical protein

Only 100 of 117 total aligned reads displayed.

ATAATTAAAAAACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTAT  >  USA300TCH1516_ALE/433366‑433543

ataatTAAAAAACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGa                                                                                         >  1:1426886/1‑91 (MQ=255)

  aatTAAAAAACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAAt                                                                                       >  1:388142/1‑91 (MQ=255)

       aaaaaCCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGt                                                                                  <  1:3698432/91‑1 (MQ=255)

        AAAACCTGACACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTa                                                                                 >  1:2333842‑M1/1‑91 (MQ=255)

        AAAACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTa                                                                                 <  1:535002‑M1/91‑1 (MQ=255)

          AACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTAtt                                                                               <  1:1711715‑M1/91‑1 (MQ=255)

          AACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTAtt                                                                               <  1:1711258‑M1/91‑1 (MQ=255)

          AACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTAtt                                                                               <  1:3993746‑M1/91‑1 (MQ=255)

           ACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTa                                                                              >  1:236337‑M1/1‑91 (MQ=255)

           ACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTa                                                                              >  1:1368503‑M1/1‑91 (MQ=255)

             CTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTaaa                                                                            <  1:207137‑M1/91‑1 (MQ=255)

              TGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAAt                                                                           <  1:23215‑M1/91‑1 (MQ=255)

               gaaacaagctgatatactccattcaatatctactttgaagagagcatatcaaactaatttgtttcaggttttATGAATTGAGTATTAAAtt                                                                          >  1:1711742‑M2/73‑91 (MQ=255)

                AAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAAttt                                                                         <  1:1384069‑M1/91‑1 (MQ=255)

                  ACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGa                                                                       >  1:2970963‑M1/1‑91 (MQ=255)

                    AAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGaaa                                                                     >  1:2866614‑M1/1‑91 (MQ=255)

                     agctgatatactccattcaatatctactttgaagagagcatatcaaactaatttgtttcaggttttATGAATTGAGTATTAAATTTGAAAg                                                                    >  1:23577‑M2/67‑91 (MQ=255)

                      aTTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGt                                                                   >  1:3781206/1‑91 (MQ=255)

                      aTTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGt                                                                   >  1:2759668/1‑91 (MQ=255)

                       ttAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTa                                                                  >  1:1454221/1‑91 (MQ=255)

                       ttAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTa                                                                  >  1:3118375/1‑91 (MQ=255)

                              gATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACa                                                           >  1:852234/1‑91 (MQ=255)

                              gATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACa                                                           >  1:209653/1‑91 (MQ=255)

                              gATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACa                                                           >  1:2153516/1‑91 (MQ=255)

                               ctccattcaatatctactttgaagagagcatatcaaactaatttgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAg                                                          >  1:3808530‑M2/57‑91 (MQ=255)

                               ctccattcaatatctactttgaagagagcatatcaaactaatttgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAg                                                          >  1:3919907‑M2/57‑91 (MQ=255)

                               ctccattcaatatctactttgaagagagcatatcaaactaatttgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAg                                                          >  1:573515‑M2/57‑91 (MQ=255)

                                    ctctctTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCta                                                     >  1:3627741/1‑91 (MQ=255)

                                    ctctctTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCta                                                     >  1:3628111/1‑91 (MQ=255)

                                    ctctctTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCta                                                     >  1:2232054/1‑91 (MQ=255)

                                    ctctctTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCta                                                     >  1:3158412/1‑91 (MQ=255)

                                      ctctTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCtata                                                   <  1:753320/91‑1 (MQ=255)

                                       tctTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAg                                                  >  1:3654225/1‑91 (MQ=255)

                                          tCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGtt                                               <  1:898867/91‑1 (MQ=255)

                                          tCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGtt                                               <  1:2321188/91‑1 (MQ=255)

                                           cAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGttt                                              <  1:2890106/91‑1 (MQ=255)

                                            aaaGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTta                                             >  1:3267121/1‑91 (MQ=255)

                                             aaGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTtat                                            >  1:498930/1‑91 (MQ=255)

                                              aGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTtata                                           >  1:1040290/1‑91 (MQ=255)

                                               gTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATaa                                          <  1:1024327/91‑1 (MQ=255)

                                                 aGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATtaaa                                        <  1:2274291/91‑1 (MQ=255)

                                                 aGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATaaaa                                        <  1:2639411/91‑1 (MQ=255)

                                                  gATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATaaaaa                                       <  1:3578361/91‑1 (MQ=255)

                                                  gATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATaaaaa                                       >  1:3105857/1‑91 (MQ=255)

                                                  gATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATaaaaa                                       >  1:4022979/1‑91 (MQ=255)

                                                   atatTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAt                                      >  1:2122474/1‑91 (MQ=255)

                                                   atatTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAt                                      >  1:1601691/1‑91 (MQ=255)

                                                     atTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCa                                    >  1:2675180/1‑91 (MQ=255)

                                                      ttGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAg                                   <  1:2280714/91‑1 (MQ=255)

                                                      ttGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAg                                   <  1:2280659/91‑1 (MQ=255)

                                                      ttGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAg                                   <  1:2280575/91‑1 (MQ=255)

                                                      ttGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAg                                   <  1:2887886/91‑1 (MQ=255)

                                                         aaTGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGttt                                >  1:797947/1‑91 (MQ=255)

                                                              aGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTaaa                           >  1:218976/1‑91 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAAt                          >  1:562938/1‑91 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAAt                          >  1:562802/1‑91 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAAt                          <  1:2435654/91‑1 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAAt                          <  1:2435617/91‑1 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAAt                          >  1:2361047/1‑91 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAAt                          >  1:1798468/1‑91 (MQ=255)

                                                               gTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAAGCAGTTTTTAAAt                          <  1:3817249/91‑1 (MQ=255)

                                                                tataTCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATc                         >  1:1720028/1‑91 (MQ=255)

                                                                tataTCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATc                         <  1:2259813/91‑1 (MQ=255)

                                                                tataTCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATc                         <  1:1907328/91‑1 (MQ=255)

                                                                 atatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCa                        >  1:893478/1‑91 (MQ=255)

                                                                 atatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCa                        <  1:1773035/91‑1 (MQ=255)

                                                                 atatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCa                        <  1:3199077/91‑1 (MQ=255)

                                                                 atatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCa                        <  1:1773284/91‑1 (MQ=255)

                                                                 atatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCa                        <  1:1773286/91‑1 (MQ=255)

                                                                  tatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCaa                       >  1:2844881/1‑91 (MQ=255)

                                                                  tatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCaa                       >  1:967447/1‑91 (MQ=255)

                                                                  tatCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCaa                       >  1:2643415/1‑91 (MQ=255)

                                                                   atCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCaaa                      <  1:1304159/91‑1 (MQ=255)

                                                                    tCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAg                     <  1:774916/91‑1 (MQ=255)

                                                                       gCTTGTTTCAGGTTTTATGAATTGATTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCta                  <  1:2817019/91‑1 (MQ=255)

                                                                       gCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCta                  >  1:3934700/1‑91 (MQ=255)

                                                                       gCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCta                  <  1:1510811/91‑1 (MQ=255)

                                                                        cTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtat                 <  1:1807538/91‑1 (MQ=255)

                                                                        cTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtat                 >  1:2520744/1‑91 (MQ=255)

                                                                         ttgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtata                <  1:4055590‑M2/77‑1 (MQ=255)

                                                                         ttgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtata                <  1:91329‑M2/77‑1 (MQ=255)

                                                                          tgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtatat               <  1:3747489‑M2/78‑1 (MQ=255)

                                                                          tgtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtatat               <  1:3747518‑M2/78‑1 (MQ=255)

                                                                          tgtgtcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtatat               <  1:3210868‑M2/78‑1 (MQ=255)

                                                                           gtttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCtatata              <  1:2871297‑M2/79‑1 (MQ=255)

                                                                            tttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTatatat             >  1:642507‑M2/12‑91 (MQ=255)

                                                                            tttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTatatat             >  1:1038565‑M2/12‑91 (MQ=255)

                                                                            tttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTatatat             >  1:1599878‑M2/12‑91 (MQ=255)

                                                                            tttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTatatat             >  1:1092230‑M2/12‑91 (MQ=255)

                                                                             ttcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATg            >  1:2803049‑M2/11‑91 (MQ=255)

                                                                              tcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGa           >  1:3647449‑M2/10‑91 (MQ=255)

                                                                              tcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGa           >  1:3430711‑M2/10‑91 (MQ=255)

                                                                              tcaggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGa           <  1:1295940‑M2/82‑1 (MQ=255)

                                                                                aggttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAAt         <  1:6227‑M2/84‑1 (MQ=255)

                                                                                  gttttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTg       <  1:2410989‑M2/86‑1 (MQ=255)

                                                                                     ttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGt    >  1:4014629‑M2/3‑91 (MQ=255)

                                                                                     ttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGt    <  1:324660‑M2/89‑1 (MQ=255)

                                                                                     ttATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGt    >  1:1838422‑M2/3‑91 (MQ=255)

                                                                                      tATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTa   >  1:713240‑M2/2‑91 (MQ=255)

                                                                                       aTGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTAt  <  1:146374/91‑1 (MQ=255)

ATAATTAAAAAACCTGAAACAAATTAGTTTGATATGCTCTCTTCAAAGTAGATATTGAATGGAGTATATCAGCTTGTTTCAGGTTTTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTAT  >  USA300TCH1516_ALE/433366‑433543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.