BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	551684 =	84 (0.850)	15 (0.170)	8/146	NT	17.1%	intergenic (+13/‑203)	cysK/folP	Cysteine synthase/Dihydropteroate synthase
*	?	USA300TCH1516_ALE	551723 =	69 (0.770)	15 (0.170)	8/146	NT	17.1%	intergenic (+52/‑164)	cysK/folP	Cysteine synthase/Dihydropteroate synthase

Only 100 of 125 total aligned reads displayed.

GCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGT  >  USA300TCH1516_ALE/551634‑551811

 aaaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCttttttt                                                                                        >  1:3826325‑M1/50‑91 (MQ=255)

  aaatgtttaatttaacgctcatatttttaaaaatatacatggtagaaaaaaagagcaagttatctcaaaaagataacttgctcttttTTTc                                                                                       >  1:2410055‑M2/88‑91 (MQ=255)

   aCTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCt                                                                                      >  1:590447/1‑91 (MQ=255)

   aCTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCt                                                                                      >  1:590339/1‑91 (MQ=255)

   aCTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCt                                                                                      >  1:3664202/1‑91 (MQ=255)

   aCTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCt                                                                                      >  1:3504982/1‑91 (MQ=255)

    cTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTa                                                                                     >  1:1335005/1‑91 (MQ=255)

      tATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTAcc                                                                                   >  1:3580729/1‑91 (MQ=255)

       aTCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCa                                                                                  >  1:1336325/1‑91 (MQ=255)

       aTCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCa                                                                                  <  1:1438071/91‑1 (MQ=255)

        tCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCAt                                                                                 >  1:2790086/1‑91 (MQ=255)

        tCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCAt                                                                                 >  1:2789905/1‑91 (MQ=255)

           atttaacgctcatatttttaaaaatatacatggtagaaaaaaagagcaagttatctttttgagataacttgctcttttTTTCTACCATGta                                                                              <  1:1232706‑M2/13‑1 (MQ=255)

           acacCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGta                                                                              >  1:1229551/1‑91 (MQ=255)

           acacCTTTATATTCATTCGATGACTAATTAATGTCATATAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGta                                                                              >  1:3495398/1‑91 (MQ=255)

             acCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGtata                                                                            <  1:1074402/91‑1 (MQ=255)

                 ttATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATAtttt                                                                        <  1:817114/91‑1 (MQ=255)

                 ttATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATAtttt                                                                        <  1:1481588/91‑1 (MQ=255)

                     attcattcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTaaa                                                                    >  1:1046652/1‑91 (MQ=255)

                     attcattcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTaaa                                                                    >  1:2240369/1‑91 (MQ=255)

                      ttcattcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTaaaa                                                                   >  1:1976716/1‑91 (MQ=255)

                         attcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAata                                                                >  1:735685/1‑91 (MQ=255)

                         attcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAata                                                                >  1:3420682/1‑91 (MQ=255)

                          ttcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAatat                                                               >  1:2622002/1‑91 (MQ=255)

                           tcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATg                                                              <  1:1336003/91‑1 (MQ=255)

                           tcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATg                                                              >  1:1139931/1‑91 (MQ=255)

                           tcGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATg                                                              <  1:829298/91‑1 (MQ=255)

                                gACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                         <  1:1281707/91‑1 (MQ=255)

                                gACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                         <  1:1281761/91‑1 (MQ=255)

                                gACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGt                                                         >  1:1928258/1‑91 (MQ=255)

                                 aCTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGATCGtt                                                        >  1:3457546/1‑91 (MQ=255)

                                    aattaatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaa                                                     >  1:3709601/1‑91 (MQ=255)

                                      ttaatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaatt                                                   >  1:253079/1‑91 (MQ=255)

                                       taatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaatta                                                  <  1:2670252/91‑1 (MQ=255)

                                       taatGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGttaaatta                                                  <  1:3808566/91‑1 (MQ=255)

                                          tGTCATTTAAAAGATTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAAc                                               <  1:43066/91‑1 (MQ=255)

                                          tGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAAc                                               >  1:1660945/1‑91 (MQ=255)

                                            tCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAt                                             >  1:624452/1‑91 (MQ=255)

                                            tCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAt                                             >  1:624149/1‑91 (MQ=255)

                                             cATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAtt                                            <  1:1169880/91‑1 (MQ=255)

                                             cATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAtt                                            <  1:3240075/91‑1 (MQ=255)

                                              gaaaAAAAGAGCAAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAttt                                           >  1:2410055‑M1/5‑91 (MQ=255)

                                              gaaaAAAAGAGCAAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAttt                                           >  1:1305283‑M1/5‑91 (MQ=255)

                                              aTTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAttt                                           >  1:3234293/1‑91 (MQ=255)

                                                ttAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAttttt                                         <  1:3900114/91‑1 (MQ=255)

                                                ttAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAttttt                                         <  1:2694640/91‑1 (MQ=255)

                                                ttAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACAttttt                                         >  1:1749823/1‑91 (MQ=255)

                                                   aaagagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTg                                      >  1:1123888‑M2/39‑91 (MQ=255)

                                                    aagagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                     >  1:4088081‑M2/38‑91 (MQ=255)

                                                    aagagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                     >  1:320551‑M2/38‑91 (MQ=255)

                                                    aagagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                     >  1:4088119‑M2/38‑91 (MQ=255)

                                                    AAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                     <  1:2713059‑M1/91‑1 (MQ=255)

                                                    AAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGa                                     <  1:1694886‑M1/91‑1 (MQ=255)

                                                     agagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:3897546‑M2/37‑91 (MQ=255)

                                                     agagcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:3836528‑M2/37‑91 (MQ=255)

                                                     AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:596020‑M1/1‑91 (MQ=255)

                                                     AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:3939324‑M1/1‑91 (MQ=255)

                                                     AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:3813050‑M1/1‑91 (MQ=255)

                                                     AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:1720709‑M1/1‑91 (MQ=255)

                                                     AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    >  1:3730814‑M1/1‑91 (MQ=255)

                                                     AGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGAt                                    <  1:3561797‑M1/91‑1 (MQ=255)

                                                      GAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATa                                   >  1:1502778‑M1/1‑91 (MQ=255)

                                                       agcaagttatctcaaaaagataactcactcttttTTTCTACCTTGTATATTTTTAAAAATATGAGCGTTAAATCAAACATTTTTCTGATaa                                  >  1:2481583‑M2/35‑91 (MQ=255)

                                                       agcaagttatctcaaaaagataactcactcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaa                                  >  1:2481499‑M2/35‑91 (MQ=255)

                                                        GTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaaa                                 >  1:1635224‑M1/1‑91 (MQ=255)

                                                        GTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaaa                                 <  1:2214810‑M1/91‑1 (MQ=255)

                                                         tgagtTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATaaaa                                <  1:1683684/91‑1 (MQ=255)

                                                            gtTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAata                             <  1:3080997/91‑1 (MQ=255)

                                                            gtTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAata                             >  1:1701152/1‑91 (MQ=255)

                                                             ttATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAatat                            >  1:990056/1‑91 (MQ=255)

                                                             ttATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAatat                            >  1:2150066/1‑91 (MQ=255)

                                                             ttATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAatat                            >  1:2149864/1‑91 (MQ=255)

                                                             ttATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAatat                            <  1:1476451/91‑1 (MQ=255)

                                                             ttATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAatat                            >  1:3822307/1‑91 (MQ=255)

                                                               atctcaaaaagataacttgctcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATcc                          >  1:640291‑M2/27‑91 (MQ=255)

                                                               atctcaaaaagataacttgctcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATcc                          >  1:539296‑M2/27‑91 (MQ=255)

                                                                tctcaaaaagataacttgctcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                         >  1:2567352‑M2/26‑91 (MQ=255)

                                                                tCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                         >  1:3563470/1‑91 (MQ=255)

                                                                tCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                         >  1:3884620/1‑91 (MQ=255)

                                                                tCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCa                         >  1:3564209/1‑91 (MQ=255)

                                                                  tttttGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGt                       >  1:665401/1‑91 (MQ=255)

                                                                    tttGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGa                     >  1:2152356/1‑91 (MQ=255)

                                                                    tttGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATACCCAGTGa                     >  1:2152235/1‑91 (MQ=255)

                                                                      aaagaTAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAAt                   >  1:1424905/3‑91 (MQ=255)

                                                                        agaTAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCATTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATga                 >  1:2873902/1‑91 (MQ=255)

                                                                         gaTAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATgat                >  1:3616086/1‑91 (MQ=255)

                                                                            aaCTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATgataag             >  1:4128015/1‑91 (MQ=255)

                                                                             aCTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATgataaga            <  1:3944900/91‑1 (MQ=255)

                                                                             aCTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATgataaga            >  1:2059281/1‑91 (MQ=255)

                                                                             aCTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATATTTCTGATAAAAATATCCAGTGAATgataaga            >  1:3533395/1‑91 (MQ=255)

                                                                               ttGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATgataagata          <  1:3583184/91‑1 (MQ=255)

                                                                                 gCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGataat        >  1:1654992/1‑91 (MQ=255)

                                                                                  ctcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGataata       >  1:1019862‑M2/8‑91 (MQ=255)

                                                                                   tcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGAtaataa      <  1:3642509‑M2/85‑1 (MQ=255)

                                                                                   tcttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGAtaataa      >  1:2726061‑M2/7‑91 (MQ=255)

                                                                                    cttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATaaa     <  1:3716646‑M2/86‑1 (MQ=255)

                                                                                    cttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATaaa     >  1:173775‑M2/6‑91 (MQ=255)

                                                                                    cttttTTTCTACCATGTATATTTTTAAAAATATGAGCGTGAAATTAAACAGTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATaaa     <  1:1075069‑M2/86‑1 (MQ=255)

                                                                                       ttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGt  >  1:4021884‑M2/3‑91 (MQ=255)

                                                                                       ttTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGt  >  1:4021780‑M2/3‑91 (MQ=255)

GCTACTTATCAACACCTTTATATTCATTCGATGACTAATTAATGTCATTTAAAAGAGTGAGTTATCTTTTTGAGATAACTTGCTCTTTTTTTCTACCATGTATATTTTTAAAAATATGAGCGTTAAATTAAACATTTTTCTGATAAAAATATCCAGTGAATGATAAGATAATAAACGT  >  USA300TCH1516_ALE/551634‑551811

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.