BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	584107 =	77 (0.780)	7 (0.080)	6/142	NT	9.6%	intergenic (+191/‑81)	rplA/rplJ	50S ribosomal protein L1/50S ribosomal protein L10
*	?	USA300TCH1516_ALE	584138 =	64 (0.730)	7 (0.080)	6/142	NT	9.6%	intergenic (+222/‑50)	rplA/rplJ	50S ribosomal protein L1/50S ribosomal protein L10

Only 100 of 106 total aligned reads displayed.

TTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGA  >  USA300TCH1516_ALE/584049‑584228

ttAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCtttt                                                                                           <  1:460993/91‑1 (MQ=255)

ttAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCtttt                                                                                           <  1:836504/91‑1 (MQ=255)

 tAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCttttt                                                                                          >  1:1621688/1‑91 (MQ=255)

   aaaTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCttttttt                                                                                        >  1:966310/1‑91 (MQ=255)

   aaaTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCttttttt                                                                                        >  1:2693093/1‑91 (MQ=255)

   aaaTTTATCCTGCCGAGGCTAAAATTGACTCGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCttttttt                                                                                        >  1:2693074/1‑91 (MQ=255)

    aaTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTtta                                                                                       <  1:2835350/91‑1 (MQ=255)

     aTTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTttat                                                                                      <  1:1887243/91‑1 (MQ=255)

       ttcagacacctccatttaaatttttggtgctttttttaaaattaataaaaaAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTttatta                                                                                    >  1:1436780‑M1/52‑91 (MQ=255)

         aTCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAt                                                                                  >  1:1325225/1‑91 (MQ=255)

         aTCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAt                                                                                  >  1:2837550/1‑91 (MQ=255)

          tCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAtt                                                                                 <  1:3476509/91‑1 (MQ=255)

           ccTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAttt                                                                                <  1:3604077/91‑1 (MQ=255)

           ccTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAttt                                                                                <  1:2491621/91‑1 (MQ=255)

           ccTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAttt                                                                                <  1:1317691/91‑1 (MQ=255)

           ccTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAttt                                                                                >  1:2844347/1‑91 (MQ=255)

            cTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAAtttt                                                                               >  1:2700050/1‑91 (MQ=255)

             tGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTa                                                                              <  1:1089168/91‑1 (MQ=255)

              gCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTaa                                                                             >  1:613480/1‑91 (MQ=255)

                  aGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTaaaaaa                                                                         <  1:747208/91‑1 (MQ=255)

                    gCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAg                                                                       >  1:4045432/1‑91 (MQ=255)

                    gCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAg                                                                       >  1:4045596/1‑91 (MQ=255)

                    gCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAg                                                                       >  1:1408478/1‑91 (MQ=255)

                      tAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAGGCa                                                                     >  1:3345618/1‑91 (MQ=255)

                      tAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCa                                                                     <  1:687602/91‑1 (MQ=255)

                       aaaaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCAc                                                                    <  1:2084897/91‑1 (MQ=255)

                       aaaaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCAc                                                                    <  1:2919139/91‑1 (MQ=255)

                        aaaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCAcc                                                                   >  1:488526/1‑91 (MQ=255)

                        aaaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCAcc                                                                   <  1:78590/91‑1 (MQ=255)

                         aaTTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCa                                                                  >  1:1446147/1‑91 (MQ=255)

                             gACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCaaaaa                                                              <  1:2191816/91‑1 (MQ=255)

                               cTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAAtt                                                            <  1:3560886/91‑1 (MQ=255)

                               cTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAAtt                                                            <  1:2205287/91‑1 (MQ=255)

                                ttGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAAttt                                                           >  1:378294/1‑91 (MQ=255)

                                 tGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTa                                                          <  1:3769933/91‑1 (MQ=255)

                                     cGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATg                                                      <  1:2757139/91‑1 (MQ=255)

                                       tgatgaTCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGa                                                    <  1:2909603/91‑1 (MQ=255)

                                         atgatctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAgg                                                  <  1:2549402/91‑1 (MQ=255)

                                         atgatctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAgg                                                  <  1:4093937/91‑1 (MQ=255)

                                         atgatctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAgg                                                  <  1:754417/91‑1 (MQ=255)

                                          tgatctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGgt                                                 >  1:4121594/1‑91 (MQ=255)

                                           gatctatgatctTTCAAGCAC‑TTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGgtgt                                               >  1:1325863/1‑91 (MQ=255)

                                            atctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGgtgt                                               >  1:2661244/1‑91 (MQ=255)

                                            atctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGgtgt                                               >  1:2962588/1‑91 (MQ=255)

                                             tctgtgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTc                                              <  1:3264437/91‑1 (MQ=255)

                                             tctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTc                                              >  1:342431/1‑91 (MQ=255)

                                             tctatgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTc                                              >  1:3507640/1‑91 (MQ=255)

                                                atgatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGa                                           <  1:2814439/91‑1 (MQ=255)

                                                 taataaaaaaagcactttctacccacggcaaaaagtgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGaa                                          >  1:1436780‑M2/41‑91 (MQ=255)

                                                  gatctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAAt                                         <  1:631621/91‑1 (MQ=255)

                                                   atctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGAAGGTGTCTGAATg                                        >  1:4154377/1‑91 (MQ=255)

                                                     ctTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTc                                      <  1:2856191/91‑1 (MQ=255)

                                                      tttCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCt                                     <  1:848462/91‑1 (MQ=255)

                                                       ttCAAGCATTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTg                                    <  1:2329292/91‑1 (MQ=255)

                                                        tCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGc                                   <  1:2298042/91‑1 (MQ=255)

                                                         cAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCt                                  >  1:4034605/1‑91 (MQ=255)

                                                         cAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCt                                  >  1:2963564/1‑91 (MQ=255)

                                                         cAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCt                                  <  1:324556/91‑1 (MQ=255)

                                                          AAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGTGGTGTCTGAATGTCTGCTa                                 <  1:1245195‑M1/91‑1 (MQ=255)

                                                          AAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTa                                 <  1:378990‑M1/91‑1 (MQ=255)

                                                            GCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATc                               <  1:3994396‑M1/91‑1 (MQ=255)

                                                             cactttctacccacggcaaaaagtgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCa                              >  1:45148‑M2/29‑91 (MQ=255)

                                                             cactttctacccacggcaaaaagtgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCa                              >  1:1727415‑M2/29‑91 (MQ=255)

                                                             CACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCa                              >  1:2187710‑M1/1‑91 (MQ=255)

                                                             CACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCa                              >  1:2297018‑M1/1‑91 (MQ=255)

                                                             CACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCa                              >  1:2297005‑M1/1‑91 (MQ=255)

                                                             CACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCa                              >  1:2187846‑M1/1‑91 (MQ=255)

                                                              ACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCAt                             <  1:651364‑M1/91‑1 (MQ=255)

                                                              ACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCAt                             <  1:1519006‑M1/91‑1 (MQ=255)

                                                               CTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCAtt                            <  1:1771082‑M1/91‑1 (MQ=255)

                                                                tttctacccacggcaaaaagtgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTg                           >  1:4127473‑M2/26‑91 (MQ=255)

                                                                TTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTg                           <  1:606171‑M1/91‑1 (MQ=255)

                                                                 TTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGa                          <  1:1585465‑M1/91‑1 (MQ=255)

                                                                  tctacccacggcaaaaagtgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGaa                         >  1:3381625‑M2/24‑91 (MQ=255)

                                                                  TTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGaa                         >  1:3822266‑M1/1‑91 (MQ=255)

                                                                   ttGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAg                        <  1:2801326/91‑1 (MQ=255)

                                                                    tGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGc                       >  1:2767674/1‑91 (MQ=255)

                                                                     gCCGTGGGTAGTAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      <  1:3757705/91‑1 (MQ=255)

                                                                     gCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      <  1:931925/91‑1 (MQ=255)

                                                                     gCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      <  1:931911/91‑1 (MQ=255)

                                                                     gCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      <  1:2542309/91‑1 (MQ=255)

                                                                     gCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      >  1:2256096/1‑91 (MQ=255)

                                                                     gCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      <  1:772382/91‑1 (MQ=255)

                                                                     gCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCt                      <  1:771995/91‑1 (MQ=255)

                                                                      ccGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTa                     <  1:65309/91‑1 (MQ=255)

                                                                      ccGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTa                     <  1:1945010/91‑1 (MQ=255)

                                                                        gTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTaaa                   >  1:2667804/1‑91 (MQ=255)

                                                                            gTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAaac               <  1:4121992/91‑1 (MQ=255)

                                                                              aGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAaacaa             >  1:2476734/1‑91 (MQ=255)

                                                                              aGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAaacaa             <  1:3061793/91‑1 (MQ=255)

                                                                              aGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAaacaa             >  1:4041384/1‑91 (MQ=255)

                                                                              aGAAAGTGCTTGTTTTATTAACTTTAAAAACAGCACCAAAAATTTAAAGGGAGGAGTCTGAATGTCTGCTATCATTGAAGCTAAAAaacaa             >  1:471902/1‑91 (MQ=255)

                                                                                 aagtgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTa          >  1:2769828‑M2/9‑91 (MQ=255)

                                                                                    tgcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGtt       >  1:712674‑M2/6‑91 (MQ=255)

                                                                                     gcttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtg      >  1:3532657‑M2/5‑91 (MQ=255)

                                                                                      cttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAATACAACTAGTtga     <  1:983608‑M2/88‑1 (MQ=255)

                                                                                      cttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtga     >  1:3937099‑M2/4‑91 (MQ=255)

                                                                                       ttTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtgat    <  1:2948044‑M2/89‑1 (MQ=255)

                                                                                         tttttATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtgatga  >  1:565556/1‑91 (MQ=255)

                                                                                         tttttATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTtgatga  <  1:529845/91‑1 (MQ=255)

TTAAAATTTATCCTGCCGAGGCTAAAATTGACTTGAACGTGATGATCTATGATCTTTCAAGCACTTTTTGCCGTGGGTAGAAAGTGCTTTTTTTATTAATTTTAAAAAAAGCACCAAAAATTTAAATGGAGGTGTCTGAATGTCTGCTATCATTGAAGCTAAAAAACAACTAGTTGATGA  >  USA300TCH1516_ALE/584049‑584228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.