BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	646656 =	101 (1.030)	11 (0.130)	7/140	NT	11.9%	intergenic (+10/‑577)	lipL/galK	Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase
*	?	USA300TCH1516_ALE	646692 =	74 (0.860)	11 (0.130)	7/140	NT	11.9%	intergenic (+46/‑541)	lipL/galK	Octanoyl‑[GcvH]:protein N‑octanoyltransferase/Galactokinase

Only 100 of 114 total aligned reads displayed.

AAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGG  >  USA300TCH1516_ALE/646603‑646780

aaaTGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTAtt                                                                                         <  1:2957432/91‑1 (MQ=255)

    gATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTg                                                                                     <  1:3055533/91‑1 (MQ=255)

    gATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTg                                                                                     >  1:49801/1‑91 (MQ=255)

    gATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTATTg                                                                                     >  1:3342842/1‑91 (MQ=255)

     aTTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGa                                                                                    >  1:2058035/1‑91 (MQ=255)

      ttGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGaa                                                                                   >  1:992090/1‑91 (MQ=255)

      ttGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGaa                                                                                   >  1:991176/1‑91 (MQ=255)

         aaagaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGt                                                                                <  1:3985786/91‑1 (MQ=255)

         aaagaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGt                                                                                <  1:3985255/91‑1 (MQ=255)

          aagaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTa                                                                               >  1:618772/1‑91 (MQ=255)

           agaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTAt                                                                              >  1:203873/1‑91 (MQ=255)

           agaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTAt                                                                              <  1:388650/91‑1 (MQ=255)

            gaaaCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATc                                                                             <  1:121831/91‑1 (MQ=255)

               aCAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCAt                                                                          >  1:2334777/1‑91 (MQ=255)

                cAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATa                                                                         >  1:3416646/1‑91 (MQ=255)

                 aaGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaa                                                                        >  1:4023570/1‑91 (MQ=255)

                   gAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaa                                                                      <  1:3969308/91‑1 (MQ=255)

                   gAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaa                                                                      <  1:1693141/91‑1 (MQ=255)

                   gAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaa                                                                      <  1:4037244/91‑1 (MQ=255)

                    aaaaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATaaaaa                                                                     >  1:1544702/1‑91 (MQ=255)

                     aaaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAg                                                                    <  1:3960502/91‑1 (MQ=255)

                      aaTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGc                                                                   <  1:2771089/91‑1 (MQ=255)

                       aTGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCa                                                                  <  1:2976230/91‑1 (MQ=255)

                          aTAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATaa                                                               >  1:2798205/1‑91 (MQ=255)

                            aGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAat                                                             <  1:3576278/91‑1 (MQ=255)

                            aGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAat                                                             >  1:1281036/1‑91 (MQ=255)

                            aGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAat                                                             <  1:820036/91‑1 (MQ=255)

                              aTCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAatat                                                           <  1:3175605/91‑1 (MQ=255)

                                  aaTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTa                                                       <  1:1544875/91‑1 (MQ=255)

                                  aaTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTa                                                       <  1:2660713/91‑1 (MQ=255)

                                  aaTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTa                                                       <  1:1544634/91‑1 (MQ=255)

                                   aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                      >  1:1003377/1‑91 (MQ=255)

                                   aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                      <  1:2240896/91‑1 (MQ=255)

                                   aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                      <  1:3404628/91‑1 (MQ=255)

                                   aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTATTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                      >  1:919760/1‑91 (MQ=255)

                                   aTGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTATTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAt                                                      >  1:1085624/1‑91 (MQ=255)

                                    tGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTAtt                                                     >  1:1737964/1‑91 (MQ=255)

                                      cAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGa                                                   <  1:411519/91‑1 (MQ=255)

                                       aaTAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGAc                                                  >  1:2628110/1‑91 (MQ=255)

                                       aaTAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGAc                                                  >  1:2628323/1‑91 (MQ=255)

                                        aTAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGAcc                                                 <  1:542521/91‑1 (MQ=255)

                                         tAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCt                                                <  1:210538/91‑1 (MQ=255)

                                         tAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCt                                                <  1:1221481/91‑1 (MQ=255)

                                         tAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCt                                                <  1:120184/91‑1 (MQ=255)

                                             tAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAata                                            <  1:3015301/91‑1 (MQ=255)

                                              aaaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAatat                                           <  1:491990/91‑1 (MQ=255)

                                              aaaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAatat                                           <  1:3339637/91‑1 (MQ=255)

                                               aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                          <  1:1769985/91‑1 (MQ=255)

                                               aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                          <  1:4109614/91‑1 (MQ=255)

                                               aaTATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAtt                                          <  1:32879/91‑1 (MQ=255)

                                                atatTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAttt                                         >  1:1359332/1‑91 (MQ=255)

                                                atatTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATAttt                                         >  1:2136082/1‑91 (MQ=255)

                                                   tttAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTaaa                                      <  1:2227893/91‑1 (MQ=255)

                                                     taacagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAAtt                                    >  1:474948‑M2/37‑91 (MQ=255)

                                                      AACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTg                                   <  1:3834788‑M1/91‑1 (MQ=255)

                                                       acagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGa                                  >  1:455455‑M2/35‑91 (MQ=255)

                                                       acagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGa                                  >  1:455185‑M2/35‑91 (MQ=255)

                                                       acagccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAAGATTTAAATTGa                                  >  1:3765448‑M2/35‑91 (MQ=255)

                                                       ACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGa                                  <  1:3651635‑M1/91‑1 (MQ=255)

                                                        CAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGaa                                 <  1:1383959‑M1/91‑1 (MQ=255)

                                                        CAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGaa                                 <  1:1383890‑M1/91‑1 (MQ=255)

                                                         AGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAc                                >  1:527811‑M1/1‑91 (MQ=255)

                                                          GCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAca                               >  1:3650558‑M1/1‑91 (MQ=255)

                                                           ccccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                              >  1:358019‑M2/31‑91 (MQ=255)

                                                           CCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                              >  1:2932554‑M1/1‑91 (MQ=255)

                                                           CCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcat                              >  1:1864454‑M1/1‑91 (MQ=255)

                                                            cccaaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatc                             >  1:2231505‑M2/30‑91 (MQ=255)

                                                            CCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATCGAAcatc                             <  1:2072561‑M1/91‑1 (MQ=255)

                                                              caaacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAAcatcat                           >  1:285873‑M2/28‑91 (MQ=255)

                                                               tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATATAAAGCATAAATATGTTATTGACGTAATATTTAAATTGAACATCatt                          <  1:3285028/91‑1 (MQ=255)

                                                               tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatt                          <  1:2023012/91‑1 (MQ=255)

                                                               tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatt                          >  1:2860225/1‑91 (MQ=255)

                                                               tttCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatt                          >  1:2663831/1‑91 (MQ=255)

                                                                aacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatta                         >  1:2237270‑M2/26‑91 (MQ=255)

                                                                aacgataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCatta                         >  1:2237370‑M2/26‑91 (MQ=255)

                                                                 tCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                        >  1:2323308/1‑91 (MQ=255)

                                                                 tCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                        >  1:274465/1‑91 (MQ=255)

                                                                 tCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaa                        >  1:274383/1‑91 (MQ=255)

                                                                   aaGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaat                      >  1:1733451/1‑91 (MQ=255)

                                                                    ataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatt                     >  1:1174544‑M2/22‑91 (MQ=255)

                                                                    ataacttgaaaggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatt                     >  1:4068391‑M2/22‑91 (MQ=255)

                                                                    aGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaatt                     <  1:1732498/91‑1 (MQ=255)

                                                                      ttATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCattaaattaa                   >  1:1461611/1‑91 (MQ=255)

                                                                       tATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCAttaaattaaa                  <  1:1765779/91‑1 (MQ=255)

                                                                         tCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAg                >  1:1978190/1‑91 (MQ=255)

                                                                          cGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTATAAGt               <  1:3272754/91‑1 (MQ=255)

                                                                            tttGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTaa             >  1:2527326/1‑91 (MQ=255)

                                                                              tGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatg           >  1:2507131/1‑91 (MQ=255)

                                                                               ggggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTCatga          >  1:518281‑M2/11‑91 (MQ=255)

                                                                                gggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgat         <  1:2878529‑M2/82‑1 (MQ=255)

                                                                                 ggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgata        <  1:4020255‑M2/83‑1 (MQ=255)

                                                                                 ggctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgata        <  1:648239‑M2/83‑1 (MQ=255)

                                                                                 ggctgttaTTTTAGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgata        >  1:3203644‑M2/9‑91 (MQ=255)

                                                                                  gctgttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatat       >  1:1096698‑M2/8‑91 (MQ=255)

                                                                                     gttaTTTTTGAAAGTGTCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATAGAACATCATTAAATTAAAAGTAatgatatgat    >  1:3537950‑M2/5‑91 (MQ=255)

                                                                                     gttaTTTTTGAAAGTCTCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATAGAACATCATTAAATTAAAAGTAatgatatgat    >  1:3537951‑M2/5‑91 (MQ=255)

                                                                                     gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatgat    >  1:4087939‑M2/5‑91 (MQ=255)

                                                                                     gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAatgatatgat    >  1:2954077‑M2/5‑91 (MQ=255)

                                                                                     gttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATCGAACATCATTAAATTAAAAGTAatgatatgat    >  1:3538098‑M2/5‑91 (MQ=255)

                                                                                      ttaTTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATatgatg   >  1:2565793‑M2/4‑91 (MQ=255)

AAATGATTGAAAGAAACAAGAAAATGATAGATCAAATGCAATAGTTAAATATTTAACAGCCCCTTTCAAGTTATCGTTTGGGGCTGTTATTTTTGAAAGTATCCATAAAAAGCATAAATATGTTATTGACCTAATATTTAAATTGAACATCATTAAATTAAAAGTAATGATATGATGG  >  USA300TCH1516_ALE/646603‑646780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.