BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	782414 =	111 (1.130)	8 (0.090)	5/140	NT	7.9%	intergenic (‑209/+133)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	782453 =	90 (1.050)	8 (0.090)	5/140	NT	7.9%	intergenic (‑248/+94)	USA300HOU_RS03820/USA300HOU_RS03825	hypothetical protein/hypothetical protein

Only 100 of 135 total aligned reads displayed.

CTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAG  >  USA300TCH1516_ALE/782363‑782539

ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                        >  1:899824/1‑91 (MQ=255)

ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                        <  1:492779/91‑1 (MQ=255)

ctctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACg                                                                                        >  1:2956181/1‑91 (MQ=255)

  ctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCt                                                                                      >  1:2770467/1‑91 (MQ=255)

  ctGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCt                                                                                      >  1:2770597/1‑91 (MQ=255)

   tGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCtt                                                                                     >  1:818288/1‑91 (MQ=255)

     cAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTc                                                                                   >  1:3989738/1‑91 (MQ=255)

       aTCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACCAGCTAGGGGGGCTGTGAAATCATACGCTTTCCa                                                                                 >  1:3399997/1‑91 (MQ=255)

        tCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAt                                                                                >  1:693254/1‑91 (MQ=255)

        tCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAt                                                                                >  1:1659638/1‑91 (MQ=255)

         cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                               >  1:3247263/1‑91 (MQ=255)

         cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                               >  1:423879/1‑91 (MQ=255)

         cTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCAtt                                                                               >  1:423296/1‑91 (MQ=255)

           tATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                                             <  1:2869634/91‑1 (MQ=255)

           tATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTATACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGa                                                                             <  1:3602466/91‑1 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                            >  1:1632288/1‑91 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                            >  1:1632456/1‑91 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                            >  1:374134/1‑91 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                            >  1:1692852/1‑91 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                            >  1:3087588/1‑91 (MQ=255)

            aTGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAg                                                                            >  1:313908/1‑91 (MQ=255)

              gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                          <  1:4109794/91‑1 (MQ=255)

              gggATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                          <  1:4109968/91‑1 (MQ=255)

              gggATTTAACAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTa                                                                          >  1:2089027/1‑91 (MQ=255)

                 aTTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATg                                                                       >  1:2732995/1‑91 (MQ=255)

                      aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                                  >  1:3186464/1‑91 (MQ=255)

                      aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                                  >  1:1810058/1‑91 (MQ=255)

                      aTAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAgtgt                                                                  >  1:1809692/1‑91 (MQ=255)

                        aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                                <  1:206568/91‑1 (MQ=255)

                        aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                                <  1:2125546/91‑1 (MQ=255)

                        aGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTaa                                                                >  1:428087/1‑91 (MQ=255)

                         gTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAAt                                                               >  1:2011242/1‑91 (MQ=255)

                         gTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAAt                                                               >  1:287863/1‑91 (MQ=255)

                          ttGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATg                                                              <  1:37407/91‑1 (MQ=255)

                          ttGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATg                                                              <  1:2189434/91‑1 (MQ=255)

                          ttGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATg                                                              <  1:330228/91‑1 (MQ=255)

                           tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                                             >  1:934278/1‑91 (MQ=255)

                           tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                                             <  1:1704770/91‑1 (MQ=255)

                           tGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGt                                                             <  1:188936/91‑1 (MQ=255)

                            gTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGta                                                            >  1:2063081/1‑91 (MQ=255)

                             tatatataTTGAAAAAAGGAAGGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtat                                                           >  1:3010557/1‑91 (MQ=255)

                              atatatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGtata                                                          >  1:48978/1‑91 (MQ=255)

                                 tatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                       <  1:2214856/91‑1 (MQ=255)

                                 tatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                       <  1:2214326/91‑1 (MQ=255)

                                 tatatTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATAttt                                                       <  1:3694307/91‑1 (MQ=255)

                                    atTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaa                                                    <  1:3744288/91‑1 (MQ=255)

                                     ttGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTaaa                                                   <  1:3376066/91‑1 (MQ=255)

                                        aaaacaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAt                                                <  1:3449254/91‑1 (MQ=255)

                                        aaaaaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAAt                                                >  1:4070830/1‑91 (MQ=255)

                                           aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTg                                             <  1:73375/91‑1 (MQ=255)

                                           aaaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTg                                             <  1:405166/91‑1 (MQ=255)

                                            aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                                            >  1:3989516/1‑91 (MQ=255)

                                            aaGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGt                                            <  1:1680185/91‑1 (MQ=255)

                                              ggAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                          >  1:4055929/1‑91 (MQ=255)

                                              ggAAAGTATGATCTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTaa                                          >  1:3205145/1‑91 (MQ=255)

                                                aaaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                        >  1:2645955/1‑91 (MQ=255)

                                                aaaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATg                                        >  1:543997/1‑91 (MQ=255)

                                                 aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                       >  1:756551/1‑91 (MQ=255)

                                                 aaGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGt                                       >  1:2186284/1‑91 (MQ=255)

                                                   GTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtat                                     >  1:2240200‑M1/1‑91 (MQ=255)

                                                   GTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtat                                     <  1:1003863‑M1/91‑1 (MQ=255)

                                                   GTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGtat                                     <  1:1274360‑M1/91‑1 (MQ=255)

                                                        atttcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                                >  1:1915353‑M2/35‑91 (MQ=255)

                                                        atttcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                                >  1:1799691‑M2/35‑91 (MQ=255)

                                                        ATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                                <  1:2622873‑M1/91‑1 (MQ=255)

                                                        ATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaa                                >  1:1057485‑M1/1‑91 (MQ=255)

                                                          ttcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaata                              >  1:3039243‑M2/33‑91 (MQ=255)

                                                           tcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatag                             >  1:2575757‑M2/32‑91 (MQ=255)

                                                           tcacagcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagaaatag                             >  1:2594551‑M2/32‑91 (MQ=255)

                                                             tACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                           >  1:1177855/1‑91 (MQ=255)

                                                             tACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                           >  1:3412132/1‑91 (MQ=255)

                                                             tACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTatagtaatagta                           >  1:66300/1‑91 (MQ=255)

                                                              aCAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAt                          <  1:664144/91‑1 (MQ=255)

                                                               cAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtg                         >  1:158273/1‑91 (MQ=255)

                                                                gcccccctagcttgtagaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgt                        >  1:280474‑M2/27‑91 (MQ=255)

                                                                 aGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTTAAAATTTGTAATGTATAGTAATAGTAtgtt                       >  1:1153414/1‑91 (MQ=255)

                                                                 aGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgtt                       >  1:3089342/1‑91 (MQ=255)

                                                                   cTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTAtgttgt                     <  1:1018868/91‑1 (MQ=255)

                                                                     aGGCGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaa                   <  1:3218179/91‑1 (MQ=255)

                                                                      ggggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaa                  <  1:457744/91‑1 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtacata                >  1:3264353/1‑91 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                >  1:3632664/1‑91 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                <  1:61389/91‑1 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                <  1:61368/91‑1 (MQ=255)

                                                                        ggggCTGTGAAATCATACGCTCTCCATTGAGTAATGAGTGTAATGTATATCATAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaata                >  1:3189098/1‑91 (MQ=255)

                                                                         gggCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGtaaataa               <  1:1207498/91‑1 (MQ=255)

                                                                           gCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATaaaa             <  1:3570236/91‑1 (MQ=255)

                                                                            cTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAg            <  1:1320934/91‑1 (MQ=255)

                                                                            cTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATCTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAg            >  1:3297387/1‑91 (MQ=255)

                                                                             tgtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGt           >  1:3411171/1‑91 (MQ=255)

                                                                             tgtgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGt           <  1:3934959/91‑1 (MQ=255)

                                                                               tgAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGttt         >  1:2530407/1‑91 (MQ=255)

                                                                                gaaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTa        >  1:3656278‑M2/11‑91 (MQ=255)

                                                                                 aaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTaa       <  1:2207737‑M2/82‑1 (MQ=255)

                                                                                 aaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTaa       <  1:2207423‑M2/82‑1 (MQ=255)

                                                                                 aaatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTaa       <  1:1532829‑M2/82‑1 (MQ=255)

                                                                                  aatcatatGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAAc      <  1:2077805‑M2/83‑1 (MQ=255)

                                                                                  aatcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAAc      >  1:3305188‑M2/9‑91 (MQ=255)

                                                                                   atcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACt     >  1:1653442‑M2/8‑91 (MQ=255)

                                                                                   atcatacGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTGAACt     >  1:3456975‑M2/8‑91 (MQ=255)

CTCTGCAATCTTATGGGATTTAATAGTTGTATATATATTGAAAAAAGGAAAGTATGATTTCTACAAGCTAGGGGGGCTGTGAAATCATACGCTTTCCATTGAGTAATGAGTGTAATGTATATTTTAAAAATTTGTAATGTATAGTAATAGTATGTTGTAAATAAAAGTTTAACTCAG  >  USA300TCH1516_ALE/782363‑782539

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.