New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 52495 =30 (1.280)62 (2.660)
+T		 5/278 2.2 70.6% intergenic (+105/‑568) USA300HOU_RS00215/USA300HOU_RS00220 hypothetical protein/hypothetical protein
?USA300TCH1516_ALE = 52988 22 (0.940)intergenic (+598/‑75) USA300HOU_RS00215/USA300HOU_RS00220 hypothetical protein/hypothetical protein

ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/52634‑52495
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA  <  USA300TCH1516_ALE/52988‑52932
                                                                                                                                              |                                                         
ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGT                                                           <  1:43800/141‑1
 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGGTTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑AGCGTTCGTCTGATTATTTCACGTG                                                          >  1:417107/1‑141
 TTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCTATTACTACGATGAT‑TTCAC‑ACGATGCCTCTGATTATTTCACGTG                                                          <  1:273859/141‑1
 TTTCAAACGATTACTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTAATTCTTTCACGTG                                                          >  1:258973/1‑141
  TTCAAACGATTCCTCTGATTATTTCCCGTGATTTTCGCGCGATTACTGCGAAGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGA                                                         <  1:235928/141‑1
  TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGA                                                         <  1:332267/141‑1
  TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCAATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGA                                                         <  1:431741/141‑1
   TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGAT                                                        >  1:474054/1‑141
   TCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGAT                                                        <  1:385086/141‑1
    cacACGATTCCTCTGATTATTTTACGTGATTTTCGCGCGTTTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATT                                                       <  1:462331/138‑1
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTGGCGCGGTTGCTGCGAAGGT‑TTAGA‑ACGATTCCTCTGCATATTTCCCGTGATT                                                       >  1:441010/1‑141
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGGTTATTTCCCGTGATT                                                       >  1:73473/1‑141
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCCCGTGgct                                                       >  1:488081/1‑138
    CAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTAAA‑ACGCTTCCTCTGATTATTTCCCGTGATT                                                       >  1:29818/1‑141
     AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGCGTTCAAACGATTCCTCTGATTATTTCACGTGATTTTGGCGCGTTTACTAGGATGAT‑TTCAA‑GCGATTCCTATGGTTATTTTATGTGATTT                                                      >  1:193552/1‑141
     AAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTT                                                      <  1:323551/141‑1
     AAACGATTCCTCTGATTATTTCACGGGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTT                                                      <  1:408166/141‑1
     AAACGATTCCTCTGATTATATCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTT                                                      >  1:299597/1‑141
     AAACCATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTT                                                      <  1:387278/141‑1
      AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTCCTACGATGAT‑TTCAA‑ACAATGCCTCTGAGTATTTCACTGGATTTT                                                     >  1:140745/1‑141
      AACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTT                                                     >  1:2709/1‑141
        CGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCTTCTGATTATTTCACGTGATTTTCG                                                   >  1:373251/1‑141
         GATTCCTGTGATTGTTTCTCGTGATTTTGGCGCGCTTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGC                                                  <  1:318698/141‑1
               TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATT                                            <  1:475758/141‑1
               TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATT                                            <  1:157938/141‑1
               TCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATT                                            >  1:315502/1‑141
                 TGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAC                                          <  1:475752/141‑1
                 TGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTAC                                          <  1:21531/141‑1
                        TTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATt                                   >  1:473320/1‑140
                         tccCGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGA                                  <  1:193283/138‑1
                           ACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCGTTGATTGTTTCACGTGATTTTCACGCGATTACTAGGATGATT                                >  1:467191/1‑141
                             GTGATTTTCGCGCGTTTACTACGATGATTCCAACCGATTCCCCTCATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTC                              <  1:248215/141‑1
                             GTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGAGATTACAAAGATGATTTC                              >  1:221429/1‑141
                               GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTT‑TTAAA‑ACGTTTCCTCTGATTGTTTCACGTGATTTTCGCGCTATTGCTACTATGTTTTCAA                            >  1:265001/1‑141
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTATTACGATGATTTCAAA                           >  1:16468/1‑141
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                           >  1:468466/1‑141
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAA                           <  1:11221/141‑1
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGAGATTACTACTATGATGTCAcc                           >  1:39137/1‑139
                                ATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCACGATTACTACGATGGTTTCAAA                           >  1:481358/1‑141
                                 TTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCCCGTGATTTTCGCGCGATTACTACGTTGATTTaacac                          >  1:228439/1‑136
                                  ttcCGCGCGATTACTACGATCATTTCAAACGATTTCTCGGATTATTTCACGGGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG                         <  1:422440/138‑1
                                  TTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACG                         <  1:28956/141‑1
                                   TTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGA                        <  1:205045/141‑1
                                     CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATATACAACACGATTC‑‑CTGATTATTTCACGTGATTTTCGCGCGATTTCTAGGATGTTTTCAAACGATT                      >  1:491999/1‑141
                                     CGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGCGATTTTCGCCCCATTTCTACACTTATTTCAGACGATT                      >  1:430623/1‑141
                                      cCGCGATTACTACGCTGATTTCAATCCATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTC                     <  1:191885/140‑1
                                       CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGTTTTCAAACGATTCC                    >  1:442937/1‑141
                                       CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC                    >  1:39481/1‑141
                                       CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCC                    <  1:413060/141‑1
                                       CGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCACACGATTATAAGGATGTTTTCAAACGATcgc                    >  1:428520/1‑138
                                        gccATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATCACTACGATATTTTCAAACGATTCCT                   <  1:249740/138‑1
                                        GCGCTTACTACGATGATTTCAAACGCTTCCTCTGATTAGTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCT                   <  1:126561/141‑1
                                        GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCCCGTCATTTTCGCGCGATTGCTCCCAGGATTTCAACCGATTCgg                   >  1:480671/1‑139
                                        GCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCT                   >  1:232567/1‑141
                                         CGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTC                  >  1:68182/1‑141
                                          GATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT                 <  1:274133/141‑1
                                          GATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCT                 >  1:187964/1‑141
                                                 ACGATGA‑TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTACTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTT         >  1:238538/1‑141
                                                   GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC        <  1:444744/141‑1
                                                   GATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC        >  1:125674/1‑141
                                                   GATGAGTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTC        <  1:444759/141‑1
                                                       ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTAAAACGATTCCTCTGATTATTTCACGC    >  1:458640/1‑141
                                                         TTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA  >  1:482573/1‑141
                                                                                                                                              |                                                         
ATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGTGATTTTCGCGCGATTACTACGATGAT‑TTCAA‑ACGATTCCTCTGATTATTTCACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  USA300TCH1516_ALE/52634‑52495
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTTTCGCGCGATTACTACGATGATTTCAAACGATTCCTCTGATTATTTCACGCGA  <  USA300TCH1516_ALE/52988‑52932

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.